No evidence for intra-segment recombination of 2009 H1N1 influenza virus in swine

Gene

Volumn 494, Issue 2, 2012, Pages 242-245

  Boni, Maciej F ^a   Smith, Gavin J D ^b   Holmes, Edward C ^c   Vijaykrishna, Dhanasekaran ^a  

^a OXFORD UNIVERSITY CLINICAL RESEARCH UNIT   (Viet Nam)

^b DUKE NUS MEDICAL SCHOOL   (Singapore)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Genome; Influenza A virus; Pandemic influenza; Swine influenza

Indexed keywords

ARTIFACT; HOMOLOGOUS RECOMBINATION; INFLUENZA VIRUS A H1N1; LETTER; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; TAXONOMIC IDENTIFICATION; VIRAL GENETICS; VIRUS STRAIN;

EVOLUTION, MOLECULAR; INFLUENZA A VIRUS; RECOMBINATION, GENETIC;

INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE; SUIDAE;

EID: 84862809561     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2011.10.041     Document Type: Letter

References (12)

1. Boni M.F., Posada D., Feldman M.W. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 2007, 176:1035-1047.
2. Boni M.F., Zhou Y., Taubenberger J.K., Holmes E.C. Homologous recombination is very rare or absent in human influenza A virus. J. Virol. 2008, 82:4807-4811.
3. Boni M.F., de Jong M.D., van Doorn H.R., Holmes E.C. Guidelines for identifying homologous recombination events in influenza A virus. PLoS One 2010, 5:e10434.
4. Gibbs M.J., Armstrong J.S., Gibbs A.J. Recombination in the hemagglutinin gene of the 1918 "Spanish Flu". Science 2001, 293:1842-1845.
5. Hao W. Evidence of intra-segmental homologous recombination in influenza A virus. Gene 2011, 481:57-64.
6. Hao W., Richardson A.O., Zheng Y., Palmer J.D. Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion. Proc. Natl. Acad. Sci. USA 2010, 107:21576-21581.
7. He C.Q., et al. Homologous recombination evidence in human and swine influenza A virus. Virology 2008, 380:12-20.
8. He C.Q., et al. Homologous recombination as an evolutionary force in the avian influenza A virus. Mol. Biol. Evol. 2009, 26:177-187.
9. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
10. Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst. Biol. 2008, 57:758-771.
11. Vijaykrishna D., et al. Reassortment of pandemic H1N1/2009 influenza A virus in swine. Science 2010, 328:1529.
12. Worobey M., Rambaut A., Pybus O.G., Robertson D.L. Questioning the evidence for genetic recombination in the 1918 "Spanish Flu" virus. Science 2002, 296:211.