A lectin-coupled, multiple reaction monitoring based quantitative analysis of human plasma glycoproteins by mass spectrometry

Analytical and Bioanalytical Chemistry

Volumn 402, Issue 6, 2012, Pages 2101-2112

  Ahn, Yeong Hee ^a   Shin, Park Min ^a   Ji, Eun Sun ^a   Kim, Hoguen ^b   Yoo, Jong Shin ^a  

^a Korea Basic Science Institute (KBSI)   (South Korea)

^b Yonsei University College of Medicine   (South Korea)

Author keywords

Cancer; Glycoprotein; Lectin; Mass spectrometry; Multiple reaction monitoring; Plasma

Indexed keywords

BIOTIN-STREPTAVIDIN; CANCER; GLYCAN STRUCTURES; GLYCOFORMS; HEPATOCELLULAR CARCINOMA; HUMAN PLASMAS; LECTIN; MAGNETIC BEADS; MULTIPLE REACTION MONITORING; PLASMA PROTEIN; PLASMA SAMPLES; PROTEIN GLYCOSYLATION; PROTEOMIC PROFILING; REPRODUCIBILITIES; SPECTROMETRIC METHODS; TANDEM MASS SPECTROMETRY; TARGET PROTEINS;

DIALYSIS; DISEASES; ESTERIFICATION; GLYCOPROTEINS; GLYCOSYLATION; MASS SPECTROMETRY; PLASMA (HUMAN); PLASMAS;

PROTEINS;

FUNGAL PROTEIN; GLYCOPROTEIN; IMMOBILIZED PROTEIN; LECTIN; LECTIN, ALEURIA AURANTIA;

AMINO ACID SEQUENCE; ARTICLE; ASCOMYCETES; BLOOD; CHEMISTRY; EVALUATION; HUMAN; LIVER CELL CARCINOMA; LIVER TUMOR; MASS SPECTROMETRY; METHODOLOGY; REPRODUCIBILITY;

AMINO ACID SEQUENCE; ASCOMYCOTA; CARCINOMA, HEPATOCELLULAR; FUNGAL PROTEINS; GLYCOPROTEINS; HUMANS; IMMOBILIZED PROTEINS; LECTINS; LIVER NEOPLASMS; MASS SPECTROMETRY; REPRODUCIBILITY OF RESULTS;

ALEURIA AURANTIA;

EID: 84862808990     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-011-5646-3     Document Type: Article

References (39)

1. TF Orntoft EM Vestergaard 1999 Clinical aspects of altered glycosylation of glycoproteins in cancer Electrophoresis 20 362 371 10.1002/(SICI)1522- 2683(19990201)20:2<362::AID-ELPS362>3.0.CO;2-V 1:STN:280: DyaK1M3htFejsw%3D%3D (Pubitemid 29125024)
2. M Pierce J Arango 1986 Rous sarcoma virus-transformed baby hamster kidney cells express higher levels of asparagine-linked tri- and tetraantennary glycopeptides containing [GlcNAc-beta (1,6)Man-alpha (1,6)Man] and poly-N-acetyllactosamine sequences than baby hamster kidney cells J Biol Chem 261 10772 10777 1:CAS:528:DyaL28Xls12rtLw%3D (Pubitemid 17194865)
3. JW Dennis S Laferte C Waghorne ML Breitman RS Kerbel 1987 Beta 1-6 branching of Asn-linked oligosaccharides is directly associated with metastasis Science 236 582 585 10.1126/science.2953071 1:CAS:528:DyaL2sXkt1Wgu7o%3D (Pubitemid 17069927)
4. S Barrabés L Pagès-Pons CM Radcliffe G Tabarés 2007 Glycosylation of serum ribonuclease 1 indicates a major endothelial origin and reveals an increase in core fucosylation in pancreatic cancer Glycobiology 17 388 400 10.1093/glycob/cwm002 (Pubitemid 46432010)
5. J Zhao W Qiu DM Simeone DM Lubman 2007 N-linked glycosylation profiling of pancreatic cancer serum using capillary liquid phase separation coupled with mass spectrometric analysis J Proteome Res 6 1126 1138 10.1021/pr0604458 1:CAS:528:DC%2BD2sXosFelug%3D%3D (Pubitemid 46480476)
6. T Mizuochi R Nishimura C Derappe T Taniguchi T Hamamoto M Mochizuki A Kobata 1983 Structures of the asparagine-linked sugar chains of human chorionic gonadotropin produced in choriocarcinoma: appearance of triantennary sugar chains and unique biantennary sugar chains J Biol Chem 258 14126 14129 1:CAS:528:DyaL3sXmtVKgtLw%3D (Pubitemid 14217932)
7. R Peracaula G Tabares L Royle DJ Harvey RA Dwek PM Rudd R de Llorens 2003 Altered glycosylation pattern allows the distinction between prostatespecific antigen (PSA) from normal and tumor origins Glycobiology 13 457 470 10.1093/glycob/cwg041 1:CAS:528:DC%2BD3sXkvFGjt7Y%3D (Pubitemid 36665420)
8. C Ohyama M Hosono K Nitta M Oh-eda K Yoshikawa T Habuchi Y Arai M Fukuda 2004 Carbohydrate structure and differential binding of prostate specific antigen to Maackia amurensis lectin between prostate cancer and benign prostate hypertrophy Glycobiology 14 671 679 10.1093/glycob/cwh071 1:CAS:528: DC%2BD2cXltlyjsr8%3D (Pubitemid 39161974)
9. AI Gomaa SA Khan EL Leen I Waked SD Taylor-Robinson 2009 Diagnosis of hepatocellular carcinoma World J Gastroenterol 15 1301 1314 10.3748/wjg.15.1301
10. RR Drake EE Schwegler G Malik J Diaz T Block A Mehta OJ Semmes 2006 Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers Mol Cell Proteomics 5 1957 1967 10.1074/mcp.M600176-MCP200 1:CAS:528:DC%2BD28XhtFGqsbfL (Pubitemid 44688203)
11. PM Drake W Cho B Li A Prakobphol E Johansen NL Anderson FE Regnier BW Gibson SJ Fisher 2010 Sweetening the pot: adding glycosylation to the biomarker discovery equation Clin Chem 56 223 236 10.1373/clinchem.2009.136333 1:CAS:528:DC%2BC3cXhslaksLs%3D
12. Z Dai J Zhou SJ Qiu YK Liu J Fan 2009 Lectin-based glycoproteomics to explore and analyze hepatocellular carcinoma-related glycoprotein markers Electrophoresis 30 2957 2966 10.1002/elps.200900064 1:CAS:528: DC%2BD1MXhtVKntb%2FM
13. M Polanski NL Anderson 2007 A list of candidate cancer biomarkers for targeted proteomics Biomarker Insights 7 1 48
14. H Ito A Kuno H Sawaki M Sogabe H Ozaki Y Tanaka M Mizokami J Shoda T Angata T Sato J Hirabayashi Y Ikehara H Narimatsu 2009 Strategy for glycoproteomics: identification of glyco-alteration using multiple glycan profiling tools J Proteome Res 8 1358 1367 10.1021/pr800735j 1:CAS:528:DC%2BD1MXhtFyrurw%3D
15. Y Qiu TH Patwa L Xu K Shedden DE Misek M Tuck G Jin MT Ruffin DK Turgeon S Synal R Bresalier N Marcon DE Brenner DM Lubman 2008 Plasma glycoprotein profiling for colorectal cancer biomarker identification by lectin glycoarray and lectin blot J Proteome Res 7 1693 1703 10.1021/pr700706s 1:CAS:528:DC%2BD1cXisVyltr0%3D
16. YH Ahn JY Lee JY Lee YS Kim JH Ko JS Yoo 2009 Quantitative analysis of an aberrant glycoform of TIMP1 from colon cancer serum by L-PHA-enrichment and SISCAPA with MRM mass spectrometry J Proteome Res 8 4216 4224 10.1021/pr900269s 1:CAS:528:DC%2BD1MXptlSnsLo%3D
17. YH Ahn YS Kim ES Ji JY Lee JA Jung JH Ko JS Yoo 2010 Comparative quantification of aberrant glycoforms by lectin-based glycoprotein enrichment coupled with multiple-reaction monitoring mass spectrometry Anal Chem 82 4441 4447 10.1021/ac1001965 1:CAS:528:DC%2BC3cXlvFykt7w%3D
18. SH Heo SJ Lee HM Ryoo JY Park JY Cho 2007 Identification of putative serum glycoprotein biomarkers for human lung adenocarcinoma by multilectin affinity chromatography and LC-MS-MS Proteomics 7 4292 4302 10.1002/pmic. 200700433 1:CAS:528:DC%2BD2sXhsVOqsL7O (Pubitemid 350250474)
19. J Stahl-Zeng V Lange R Ossola K Eckhardt W Krek R Aebersold B Domon 2007 High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites Mol Cell Proteomics 6 1809 1817 10.1074/mcp.M700132-MCP200 1:CAS:528:DC%2BD2sXht1WksbvN (Pubitemid 350031682)
20. Hua S, Nwosu CC, Strum JS, Seipert RR, An HJ, Zivkovic AM, German JB, Lebrilla CB (2011) Site-specific protein glycosylation analysis with glycan isomer differentiation. Anal Bioanal Chem. doi: 10.1007/s00216-011-5109-x
21. K Jung W Cho FE Regnier 2009 Glycoproteomics of plasma based on narrow selectivity lectin affinity chromatography J Proteome Res 8 643 650 10.1021/pr8007495 1:CAS:528:DC%2BD1cXhsFWqsrvO
22. T Kumada S Nakano I Takeda S Kiriyama Y Sone K Hayashi H Katoh T Endoh T Sassa S Satomura 1999 Clinical utility of Lens culinaris agglutinin-reactive alphafetoprotein in small hepatocellular carcinoma: special reference to imaging diagnosis J Hepatol 30 125 130 10.1016/S0168-8278(99)80016-6 1:STN:280:DyaK1M7isVenuw%3D%3D (Pubitemid 29023661)
23. VV Khien HV Mao TT Chinh PT Ha MH Bang BV Lac TV Hop NA Tuan LV Don K Taketa S Satomura 2001 Clinical evaluation of lentil lectin-reactive alpha-fetoprotein-L3 in histology-proven hepatocellular carcinoma Int J Biol Markers 16 105 111 1:STN:280:DC%2BD38%2FisFShug%3D%3D (Pubitemid 32755127)
24. H Miyaaki O Nakashima M Kurogi K Eguchi M Kojiro 2007 Lens culinaris agglutinin-reactive alpha-fetoprotein and protein induced by vitamin K absence II are potential indicators of a poor prognosis: a histopathological study of surgically resected hepatocellular carcinoma J Gastroenterol 42 962 968 10.1007/s00535-007-2117-x 1:CAS:528:DC%2BD2sXhsVelsbzN
25. S Chen T LaRoche D Hamelinck D Bergsma D Brenner D Simeone RE Brand BB Haab 2007 Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays Nat Methods 4 437 444 10.1038/nmeth1107-879 1:CAS:528:DC%2BD2sXks1yntbw%3D (Pubitemid 350042367)
26. A Kuno N Uchiyama S Koseki-Kuno Y Ebe S Takashima M Yamada J Hirabayashi 2005 Evanescent-field fluorescence-assisted lectin microarray: a new strategy for glycan profiling Nat Methods 2 851 856 10.1038/nmeth803 1:CAS:528: DC%2BD2MXhtFyrtbzJ (Pubitemid 41741536)
27. KT Pilobello L Krishnamoorthy D Slawek LK Mahal 2005 Development of a lectin microarray for the rapid analysis of protein glycopatterns Chembiochem 6 985 989 10.1002/cbic.200400403 1:CAS:528:DC%2BD2MXlsVSqtLo%3D (Pubitemid 40825336)
28. E Kuhn J Wu J Karl H Liao W Zolg B Guild 2004 Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13 C-labeled peptide standards Proteomics 4 1175 1186 10.1002/pmic.200300670 1:CAS:528: DC%2BD2cXjt1Smtb8%3D (Pubitemid 38445974)
29. L Anderson CL Hunter 2006 Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins Mol Cell Proteomics 5 573 588 1:CAS:528:DC%2BD28XjsVCmtb8%3D
30. A Martínez-Villalba E Moyano CPB Martins MT Galceran 2010 Fast liquid chromatography/tandem mass spectrometry (highly selective selected reaction monitoring) for the determination of toltrazuril and its metabolites in food Anal Bioanal Chem 397 2893 2901 10.1007/s00216-010-3704-x
31. MJ McKay J Sherman MT Laver MS Baker SJ Clarke MP Molloy 2007 The development of multiple reaction monitoring assays for liver-derived plasma proteins Proteomics Clin Appl 1 1570 1581 10.1002/prca.200700305 1:CAS:528:DC%2BD1cXntA%3D%3D
32. MA Kuzyk D Smith J Yang TJ Cross AM Jackson DB Hardie NL Anderson CH Borchers 2009 Multiple reaction monitoring-based, multiplexed, absolute quantification of 45 proteins in human plasma Mol Cell Proteomics 8 1860 1877 10.1074/mcp.M800540-MCP200 1:CAS:528:DC%2BD1MXhtVSjtbjM
33. TA Addona SE Abbatiello B Schilling 2009 Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma Nat Biotechnol 27 633 641 10.1038/nbt.1546 1:CAS:528:DC%2BD1MXnslKqurY%3D
34. 18O incorporation and multiple reaction monitoring: a universal strategy for absolute quantitative verification of serum candidate biomarkers of liver cancer J Proteome Res 9 3319 3327 10.1021/pr9011969 1:CAS:528:DC%2BC3cXlvVSmt7Y%3D
35. N Kochibe K Furukawa 1980 Purification and properties of a novel fucose-specific hemagglutinin of Aleuria aurantia Biochemistry 19 2841 2846 10.1021/bi00554a004 1:CAS:528:DyaL3cXks1ygsbs%3D
36. K Matsumura K Higashida H Ishida Y Hata K Yamamoto M Shigeta Y Mizuno-Horikawa X Wang E Miyoshi J Gu N Taniguchi 2007 Carbohydrate binding specificity of a fucose-specific lectin from Aspergillus oryzae: a novel probe for core fucose J Biol Chem 282 15700 15708 10.1074/jbc.M701195200 1:CAS:528:DC%2BD2sXltl2nsrk%3D (Pubitemid 47093286)
37. MA Comunale M Wang J Hafner J Krakover L Rodemich B Kopenhaver RE Long O Junaidi AM Bisceglie TM Block AS Mehta 2009 Identification and development of fucosylated glycoproteins as biomarkers of primary hepatocellular carcinoma J Proteome Res 8 595 602 10.1021/pr800752c 1:CAS:528:DC%2BD1cXhsFals7jL
38. Y Wang X Ao H Vuong M Konanur FR Miller S Goodison DM Lubman 2008 Membrane glycoproteins associated with breast tumor cell progression identified by a lectin affinity approach J Proteome Res 7 4313 4325 10.1021/pr8002547 1:CAS:528:DC%2BD1cXhtVGgurvI
39. M Kullolli WS Hancock M Hincapie 2008 Preparation of a high-performance multi-lectin affinity chromatography (HP-M-LAC) adsorbent for the analysis of human plasma glycoproteins J Sep Sci 31 2733 2739 10.1002/jssc.200800233 1:CAS:528:DC%2BD1cXhtVGrurzO