Characterization and genetic analysis of an EIN4-like sequence (CaETR-1) located in QTL AR1 implicated in ascochyta blight resistance in chickpea

Plant Cell Reports

Volumn 31, Issue 6, 2012, Pages 1033-1042

  Madrid, E ^a   Rajesh, P N ^b,c   Rubio, J ^d   Gil, J ^a   Millan T ^a   Chen, W ^c  

^a UNIVERSITY OF CÓRDOBA   (Spain)

^b DOW AGROSCIENCES LLC   (United States)

^c WASHINGTON STATE UNIVERSITY   (United States)

^d IFAPA CENTRO ALAMEDA DEL OBISPO   (Spain)

Author keywords

Ascochyta blight; Chickpea; Ethylene receptors; Quantitative trait loci

Indexed keywords

CELL SURFACE RECEPTOR; ETHYLENE RECEPTORS, PLANT; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ASCOMYCETES; CHROMOSOME MAP; CICER; DISEASE RESISTANCE; DNA SEQUENCE; GENETIC RECOMBINATION; GENETICS; INBREEDING; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; PLANT DISEASE; PLANT GENE; QUANTITATIVE TRAIT LOCUS; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; ASCOMYCOTA; BASE SEQUENCE; CHROMOSOME MAPPING; CICER; DISEASE RESISTANCE; GENES, PLANT; INBREEDING; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANT PROTEINS; QUANTITATIVE TRAIT LOCI; RECEPTORS, CELL SURFACE; RECOMBINATION, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

ARABIDOPSIS; ASCOCHYTA; CICER ARIETINUM; MEDICAGO TRUNCATULA;

EID: 84862805198     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-011-1221-9     Document Type: Article

References (62)

1. Abbo S, Molina C, Jungmann R, Grusak MA, Berkovitch Z, Reifen R, Kahl G, Winter P, Reifen R (2005) Quantitative trait loci governing carotenoid concentration and weight in seeds of chickpea (Cicer arietinum L.). Theor Appl Genet 111: 185-195.
2. Abeles FB, Morgan PW, Saltveit ME Jr (1992) Ethylene in Plant Biology, 2nd edn edn. Academic Press, San Diego.
3. Bassett CL, Artlip TS, Callahan AM (2002) Characterization of the peach homologue of the ethylene receptor, PpETR1, reveals some unusual features regarding transcript processing. Planta 215: 679-688.
4. Broekaert WF, Delauré SL, De Bolle MFC, Cammue BPA (2006) The role of ethylene in host-pathogen interactions. Annu Rev Phytopathol 44: 393-416.
5. Chang C, Shockey JA (1999) The ethylene-response pathway: signal perception to gene regulation. Curr Opin Plant Biol 2: 352-358.
6. Chang C, Stewart RC (1998) The two-component system: regulation of diverse signaling pathways in prokaryotes and eukaryotes. Plant Physiol 117: 723-731.
7. Chen W, Coyne C, Peever T, Muehlbauer FJ (2004) Characterization of chickpea differentials for ascochyta blight and identification of resistance sources for Didymella rabiei. Plant Pathol 53: 759-769.
8. Cho S, Muehlbauer FJ (2004) Genetic effect of differentially regulated fungal response genes on resistance to necrotrophic fungal pathogens in chickpea (Cicer arietinum L.). Physiol Mol Plant Pathol 64: 57-66.
9. Cho S, Chen W, Muehlbauer FJ (2004) Pathotype-specific genetic factors in chickpea (Cicer arietinum L.) for quantitative resistance to ascochyta blight. Theor Appl Genet 109: 733-739.
10. Chou ZF, Chen F, Wilusz J (1994) Sequence and position requirements for uridylate-rich downstream elements of polyadenylation signals. Nucleic Acids Res 22: 2525-2531.
11. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
12. Cobos M, Fernandez M, Rubio J, Kharrat M, Moreno M, Gil J, Millán T (2005) A linkage map of chickpea (Cicer arietinum L.) based on populations from kabuli × desi crosses: location of genes for resistance to Fusarium wilt race 0. Theor Appl Genet 110: 1347-1353.
13. Cobos MJ, Rubio J, Fernández-Romero MD, Garza R, Moreno MT, Millán T, Gil J (2007) Genetic analysis of seed size, yield and days to flowering in a chickpea RIL population derived from a kabuli x desi cross. Ann App Biol 151: 33-42.
14. Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Phil Trans Roy Soc B 363: 557-572.
15. Decker CJ, Parker R (1995) Diversity of cytoplasmic functions for the 3′ untranslated region of eukaryotic transcripts. Curr Opin Cell Biol 7: 386-392.
16. Dodds PN, Rathjen JP (2010) Plant immunity: towards an integrated view of plant-pathogen interactions. Nature Rev 11: 539-548.
17. Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A (2010) Geneious v5. 0, Available from http://www. geneious. com.
18. Ecker JR (1995) The ethylene signal transduction pathway in plants. Science 268: 667-675.
19. FAOSTAT-Agriculture 2009 Database http://faostat. fao. org/site/339/default. aspx.
20. Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R et al (2006) Pfam: clans, web tools and services. Nucleic Acids Res 34: D247-D251.
21. Gamble RL, CoonWeld ML, Schaller GE (1998) Histidine kinase activity of the ETR1 ethylene receptor from Arabidopsis. Proc Natl Acad Sci USA 95: 7825-7829.
22. Gehring NH, Frede U, Neu-Yilik G, Hundsdoerfer P, Vetter B, Hentze MW, Andreas E, Kulozik AE (2001) Increased efficiency of mRNA 3′ end formation: a new genetic mechanism contributing to hereditary thrombophilia. Nat Genet 28: 389-392.
23. Hospital F (2009) Challenges for effective marker-assisted selection in plants. Genetica 136: 303-310.
24. Hüttel B, Winter P, Weising K, Choumane W, Weigand F, Kahl G (1999) Sequence-tagged microsatellite-site markers for chickpea (Cicer arietinum L.). Genome 42: 210-217.
25. Iruela M, Rubio J, Barro F, Cubero JI, Millán T, Gil J (2006) Detection of two quantitative trait loci for resistance to ascochyta blight in an intra-specific cross of chickpea (Cicer arietinum L.): development of SCAR markers associated with resistance. Theorl Appl Genet 112: 278-287.
26. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12: 172-175.
27. Leclercq J, Adams-Phillips LC, Zegzouti H, Jones B, Latche A, Giovannoni JJ, Pech JC, Bouzayen M (2002) LeCTR1, a tomato CTR1-like gene, demonstrates ethylene signaling ability in Arabidopsis and novel expression patterns. Tomato Plant Physiol 130: 1132-1142.
28. Lichtenzveig J, Scheuring C, Dodge J, Abbo S, Zhang HB (2005) Construction of BAC and BIBAC libraries and their applications for generation of SSR markers for genome analysis of chickpea, Cicerarietinum L. Theor Appl Genet 110: 492-510.
29. Lorenzo O, Piqueras R, Sánchez-Serrano JJ, Solano R (2003) Ethylene response factor1 integrates signals from ethylene and jasmonate pathways in plant defense. Plant Cell 15: 165-178.
30. Millán T, Winter P, Jüngling R, Gil J, Rubio J, Cho S, Cobos MJ, Iruela M, Rajesh PN, Tekeoglu M, Kahl G, Muehlbauer FJ (2010) A consensus genetic map of chickpea (Cicer arietinum L.) based on 10 mapping populations. Euphytica 175: 175-189.
31. Morrison M, Harris KS, Roth MB (1997) Smg mutants affect the expression of alternatively spliced SR protein mRNAs in Caenorhabditis elegans. Proc Natl Acad Sci USA 94: 9782-9785.
32. Nayak SN, Zhu H, Varghese N, Datta S, Choi HK et al (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theor Appl Genet 120: 1415-1441.
33. Nene YL (1982) A review of Ascochyta blight of chickpea. Trop Pest Manage 28: 61-70.
34. Nene YL, Reddy MV (1987) Chickpea disease and their control. In: Saxena MC, Singh KB (eds) The chickpea. The International Center for Agricultural Research in the dry areas, CAB International, pp 233-270.
35. Pande S, Siddique KHM, Kishore GK, Bayaa B, Gaur PM, Gowda CLL, Bretag TW, Crouch JH (2005) Ascochyta blight of chickpea (Cicer arietinum L.): a review of biology, pathogenicity, and disease management. Aust J Agr Res 56: 317-332.
36. Parkinson JS, Kofoid EC (1992) Communication modules in bacterial two-component regulators. Ann Rev Genet 26: 71-112.
37. Rajesh PN, Coyne C, Meksem K, Sharma KD, Gupta V, Muehlbauer FJ (2004) Construction of a HindIII bacterial artificial chromosome library and its use in identification of clones associated with disease resistance in chickpea. Theor Appl Genet 108: 663-669.
38. Rajesh PN, O'Bleness M, Roe BA, Muehlbauer FJ (2008) Analysis of genome organization, composition and microsynteny using 500 kb BAC sequences in chickpea. Theor Appl Genet 117: 449-458.
39. Rodriquez FI, Esch JJ, Hall AE, Binder BM, Schaller GE, Bleecker AB (1999) A copper cofactor for the ethylene receptor ETR1 from Arabidopsis. Science 283: 996-998.
40. Rozen S, Skaletsky H (2000) Primer 3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods protocols: methods in molecular biology. Humana Press, Totowa, pp 365-386.
41. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
42. Santra DK, Tekeoglu M, Ratnaparkhe M, Kaiser WJ, Muehlbauer FJ (2000) Identification and mapping of QTLs conferring resistance to ascochyta blight in chickpea. Crop Sci 40: 1606-1612.
43. Schaller GE, Bleecker AB (1995) Ethylene-binding sites generated in yeast expressing the Arabidopsis ETR1 gene. Science 270: 1809-1811.
44. Schaller GE, Ladd AN, Lanahan MB, Spanbauer JM, Bleecker AB (1995) The ethylene response mediator ETR1 from Arabidopsis forms a disulfide-linked dimmer. J Biol Chem 270: 12526-12530.
45. Seres A, Deák G, Tóth G, Aubert G, Burstin J, Ellis N, Kiss GB (2007) Comparative mapping. In: Mathesius U, E. P. Journet EP, Sumner LW (eds) The Medicago truncatula Handbook. ISBN: 0-9754303-1-9 [WWW document]. http://www. noble. org/MedicagoHandbook/.
46. Sethy NK, Shokeen B, Edwards KJ, Bhatia S (2006) Development of microsatellite markers and analysis of intraspecific genetic variability in chickpea (Cicer arietinum L.). Theor Appl Genet 112: 1416-1428.
47. Staswick PE, Yuen GY, Lehman CC (1998) Jasmonate signaling mutants of Arabidopsis are susceptible to the soil fungus Pythium irregulare. Plant J 15: 747-754.
48. Stein N, Feuillet C, Wicker T, Schlagenhauf E, Keller B (2000) Subgenome chromosome walking in wheat: a 450-kb physical contig in Triticum monococcum L. spans the Lr 10 resistance locus in hexaploid wheat (Triticum aestivum L.). Proc Natl Acad Sci USA 97: 13436-13441.
49. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol Biol and Evol 24: 1596-1599.
50. Tekeoglu M, Rajesh PN, Muehlbauer FJ (2002) Integration of sequence tagged microsatellite sites to the chickpea genetic map. Theor Appl Genet 105: 847-854.
51. Thompson JD, Desmond GH, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
52. Turner JG, Ellis C, Devoto AA (2002) The jasmonate signal pathway. Plant Cell 14: S153-S164.
53. Udupa SM, Baum M (2003) Genetic dissection of pathotype-specific resistance to ascochyta blight disease in chickpea (Cicer arietinum L.) using microsatellite markers. Theor Appl Genet 106: 1196-1202.
54. van Ooijen JW (2004) MAPQIL_5. Software for the mapping of quantitative trait loci in experimental populations. Plant Research International, Wageningen.
55. ® 4, software for the calculation of genetic linkage experimental populations. Kyazma BV, Wageningen, The Netherlands.
56. Vijayan P, Shockey J, Levesque CA, Cook RJ, Browse J (1998) A role for jasmonate in pathogen defense of Arabidopsis. Proc Natl Acad Sci USA 95: 7209-7214.
57. Wang KL, Li CH, Ecker JR (2002) Ethylene biosynthesis and signalling networks. Plant Cell 14: S131-S151.
58. Winter P, Pfaff T, Udupa SM, Hüttel B, Sharma PC, Sahim S, Arreguin-Espinoza R, Weigand F, Muehlbauer FJ, Kahl G (1999) Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicerarietinum L.) genome. Mol Gen Genom 262: 90-101.
59. Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X et al (2002) A draft sequence of the rice genome. Science 296: 79-91.
60. Zhang J, Madden T (1997) PowerBLAST: a new network BLAST application for interactive and automated sequence analysis and annotation. Genome Res 7: 649-656.
61. Zhang H-B, Wing RA (1997) Physical mapping of the rice genome with BACs. Plant Mol Biol 35: 115-127.
62. Zuckerkandl E, Pauling L (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vogel HJHG (eds) Evolving genes and proteins. Academic Press, New York, pp 97-166.