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Volumn 110, Issue 1, 2012, Pages 111-121

RNA-sequencing tag profiling of the placenta and pericarp of pungent pepper provides robust candidates contributing to capsaicinoid biosynthesis

Author keywords

Capsaicinoid biosynthesis; Molecular mechanism; Placenta; Pungent pepper; RNA sequencing

Indexed keywords

CAPSAICINOIDS; EXPRESSED GENES; EXPRESSION LEVELS; EXPRESSION PATTERNS; GENE ONTOLOGY; METABOLIC PROCESS; MOLECULAR MECHANISM; PLACENTA; PUNGENT PEPPER; QUANTITATIVE RT-PCR; RNA-SEQUENCING; SEMI-QUANTITATIVE RT-PCR; SYNTHASES; TRANSCRIPTIONAL PROFILING;

EID: 84862787950     PISSN: 01676857     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11240-012-0135-8     Document Type: Article
Times cited : (32)

References (48)
  • 1
    • 38049027400 scopus 로고    scopus 로고
    • Virus-induced silencing of Comt, pAmt and Kas genes results in a reduction of capsaicinoid accumulation in chili pepper fruits
    • Abraham-Juárez MD, Rocha-Granados MD, Lopez MG, Rivera-Bustamante RF, Ochoa-Alejo N (2008) Virus-induced silencing of Comt, pAmt and Kas genes results in a reduction of capsaicinoid accumulation in chili pepper fruits. Planta 227: 681-695.
    • (2008) Planta , vol.227 , pp. 681-695
    • Abraham-Juárez, M.D.1    Rocha-Granados, M.D.2    Lopez, M.G.3    Rivera-Bustamante, R.F.4    Ochoa-Alejo, N.5
  • 2
    • 0037898122 scopus 로고    scopus 로고
    • Differential expression of fatty acid synthase genes, Acl, Fat and Kas in Capsicum fruit
    • Aluru MR, Mazourek M, Landry LG, Curry J, Jahn M, O'Connell MA (2003) Differential expression of fatty acid synthase genes, Acl, Fat and Kas in Capsicum fruit. J Exp Bot 54: 1655-1664.
    • (2003) J Exp Bot , vol.54 , pp. 1655-1664
    • Aluru, M.R.1    Mazourek, M.2    Landry, L.G.3    Curry, J.4    Jahn, M.5    O'Connell, M.A.6
  • 3
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7: 986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 4
    • 79954629729 scopus 로고    scopus 로고
    • Molecular biology of capsaicinoid biosynthesis in chili pepper (Capsicum spp.)
    • Aza-González C, Núňez-Palenius HG, Ochoa-Alejo N (2011) Molecular biology of capsaicinoid biosynthesis in chili pepper (Capsicum spp.). Plant Cell Rep 30: 695-706.
    • (2011) Plant Cell Rep , vol.30 , pp. 695-706
    • Aza-González, C.1    Núňez-Palenius, H.G.2    Ochoa-Alejo, N.3
  • 5
    • 37049141546 scopus 로고
    • Constitution and biosynthesis of capsaicin
    • Bennett DJ, Kirby GW (1968) Constitution and biosynthesis of capsaicin. J Chem Soc C 4: 442-446.
    • (1968) J Chem Soc C , vol.4 , pp. 442-446
    • Bennett, D.J.1    Kirby, G.W.2
  • 6
    • 0347300260 scopus 로고    scopus 로고
    • Molecular mapping of capsaicinoid biosynthesis genes and quantitative trait loci analysis for capsaicinoid content in Capsicum
    • Blum E, Mazourek M, O'Connell MA, Curry J, Thorup T, Liu K, Jahn M, Paran I (2003) Molecular mapping of capsaicinoid biosynthesis genes and quantitative trait loci analysis for capsaicinoid content in Capsicum. Theor Appl Genet 108: 79-86.
    • (2003) Theor Appl Genet , vol.108 , pp. 79-86
    • Blum, E.1    Mazourek, M.2    O'Connell, M.A.3    Curry, J.4    Thorup, T.5    Liu, K.6    Jahn, M.7    Paran, I.8
  • 8
    • 0033569433 scopus 로고    scopus 로고
    • Transcripts for possible capsaicinoid biosynthetic genes are differentially accumulated in pungent and non-pungent Capsicum spp
    • Curry J, Aluru M, Mendoza M, Nevarez J, Melendrez M, O'Connell MA (1999) Transcripts for possible capsaicinoid biosynthetic genes are differentially accumulated in pungent and non-pungent Capsicum spp. Plant Sci 148: 47-57.
    • (1999) Plant Sci , vol.148 , pp. 47-57
    • Curry, J.1    Aluru, M.2    Mendoza, M.3    Nevarez, J.4    Melendrez, M.5    O'Connell, M.A.6
  • 10
    • 80052024465 scopus 로고    scopus 로고
    • Effects of sorbitol on expression of genes involved in regeneration of upland rice (Oryza sativa L.)
    • Feng X, Zhao P, Hao J, Hu J, Kang D, Wang H (2011) Effects of sorbitol on expression of genes involved in regeneration of upland rice (Oryza sativa L.). Plant Cell Tiss Organ Cult 106: 455-463.
    • (2011) Plant Cell Tiss Organ Cult , vol.106 , pp. 455-463
    • Feng, X.1    Zhao, P.2    Hao, J.3    Hu, J.4    Kang, D.5    Wang, H.6
  • 11
    • 0006562193 scopus 로고
    • Intracellular localization of capsaicin and its analogues in Capsicum fruit. II. The vacuole as the intracellular accumulation site of capsaicinoids in the protoplast of Capsicum fruit
    • Fujiwake H, Suzuki T, Iwai K (1980) Intracellular localization of capsaicin and its analogues in Capsicum fruit. II. The vacuole as the intracellular accumulation site of capsaicinoids in the protoplast of Capsicum fruit. Plant Cell Physiol 21: 1023-1030.
    • (1980) Plant Cell Physiol , vol.21 , pp. 1023-1030
    • Fujiwake, H.1    Suzuki, T.2    Iwai, K.3
  • 12
    • 0020362702 scopus 로고
    • Intracellular distribution of enzymes and intermediates involved in biosynthesis of capsaicin and its analogues in Capsicum fruits
    • Fujiwake H, Suzuki T, Iwai K (1982a) Intracellular distribution of enzymes and intermediates involved in biosynthesis of capsaicin and its analogues in Capsicum fruits. Agric Biol Chem 46: 2685-2689.
    • (1982) Agric Biol Chem , vol.46 , pp. 2685-2689
    • Fujiwake, H.1    Suzuki, T.2    Iwai, K.3
  • 13
    • 84954940052 scopus 로고
    • Capsaicinoid formation in the protoplast from placenta of Capsicum fruits
    • Fujiwake H, Suzuki T, Iwai K (1982b) Capsaicinoid formation in the protoplast from placenta of Capsicum fruits. Agric Biol Chem 46: 2591-2592.
    • (1982) Agric Biol Chem , vol.46 , pp. 2591-2592
    • Fujiwake, H.1    Suzuki, T.2    Iwai, K.3
  • 14
    • 0032512772 scopus 로고    scopus 로고
    • Metabolism of ferulic acid to vanillin: a bacterial gene of the enoyl-SCoA hydratase/isomerase superfamily encodes an enzyme for the hydration and cleavage of hydroxycinnamic acid SCoA thioester
    • Gasson MJ, Kitamura Y, McLauchlan WR, Narband A, Parr AJ, Parsons ELH, Payne J, Rhodes MJC, Walton NJ (1998) Metabolism of ferulic acid to vanillin: a bacterial gene of the enoyl-SCoA hydratase/isomerase superfamily encodes an enzyme for the hydration and cleavage of hydroxycinnamic acid SCoA thioester. J Biol Chem 273: 4163-4170.
    • (1998) J Biol Chem , vol.273 , pp. 4163-4170
    • Gasson, M.J.1    Kitamura, Y.2    McLauchlan, W.R.3    Narband, A.4    Parr, A.J.5    Parsons, E.L.H.6    Payne, J.7    Rhodes, M.J.C.8    Walton, N.J.9
  • 15
    • 23644460630 scopus 로고    scopus 로고
    • Tag-based approaches for transcriptome research and genome annotation
    • Harbers M, Carninci P (2005) Tag-based approaches for transcriptome research and genome annotation. Nat Methods 2: 495-502.
    • (2005) Nat Methods , vol.2 , pp. 495-502
    • Harbers, M.1    Carninci, P.2
  • 16
    • 0037414824 scopus 로고    scopus 로고
    • Purification, cloning, and properties of an acyltransferase controlling shikimate and quinate ester intermediates in phenylpropanoid metabolism
    • Hoffmann L, Maury S, Martz F, Geoffroy P, Legrand M (2003) Purification, cloning, and properties of an acyltransferase controlling shikimate and quinate ester intermediates in phenylpropanoid metabolism. J Biol Chem 278: 95-103.
    • (2003) J Biol Chem , vol.278 , pp. 95-103
    • Hoffmann, L.1    Maury, S.2    Martz, F.3    Geoffroy, P.4    Legrand, M.5
  • 19
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 21
    • 79960561701 scopus 로고    scopus 로고
    • A DREB gene from the xero-halophyte Atriplex halimus is induced by osmotic but not ionic stress and shows distinct differences from glycophytic homologues
    • Khedr AHA, Serag MS, Nemat-Alla MM, Abo-Elnaga AZ, Nada RM, Quick WP, Abogadallah GM (2011) A DREB gene from the xero-halophyte Atriplex halimus is induced by osmotic but not ionic stress and shows distinct differences from glycophytic homologues. Plant Cell Tissu Org Cult 106: 191-206.
    • (2011) Plant Cell Tissu Org Cult , vol.106 , pp. 191-206
    • Khedr, A.H.A.1    Serag, M.S.2    Nemat-Alla, M.M.3    Abo-Elnaga, A.Z.4    Nada, R.M.5    Quick, W.P.6    Abogadallah, G.M.7
  • 22
    • 0035972236 scopus 로고    scopus 로고
    • Isolation of cDNA clones differentially accumulated in the placenta of pungent pepper by suppression subtractive hybridization
    • Kim M, Kim S, Kim S, Kim BD (2001) Isolation of cDNA clones differentially accumulated in the placenta of pungent pepper by suppression subtractive hybridization. Mol Cells 11: 213-219.
    • (2001) Mol Cells , vol.11 , pp. 213-219
    • Kim, M.1    Kim, S.2    Kim, S.3    Kim, B.D.4
  • 23
    • 33644977891 scopus 로고    scopus 로고
    • A gene encoding a putative acyl-transferase involved in pungency of Capsicum
    • Lang Y, Yanagawa S, Sasanuma T, Sasakuma T (2006) A gene encoding a putative acyl-transferase involved in pungency of Capsicum. Breed Sci 56: 55-62.
    • (2006) Breed Sci , vol.56 , pp. 55-62
    • Lang, Y.1    Yanagawa, S.2    Sasanuma, T.3    Sasakuma, T.4
  • 24
    • 26044463205 scopus 로고    scopus 로고
    • Nonpungent Capsicum contains a deletion in the capsaicinoid synthetase gene, which allows early detection of pungency with SCAR markers
    • Lee CJ, Yoo EY, Shin J, Lee J, Hwang HS, Kim BD (2005) Nonpungent Capsicum contains a deletion in the capsaicinoid synthetase gene, which allows early detection of pungency with SCAR markers. Mol Cells 19: 262-267.
    • (2005) Mol Cells , vol.19 , pp. 262-267
    • Lee, C.J.1    Yoo, E.Y.2    Shin, J.3    Lee, J.4    Hwang, H.S.5    Kim, B.D.6
  • 25
    • 33749626268 scopus 로고    scopus 로고
    • A differentially expressed proteomic analysis in placental tissues in relation to pungency during the pepper fruit development
    • Lee JM, Kim S, Lee JY, Yoo JY, Cho MC, Cho MR, Kim B-D, Bahk YY (2006) A differentially expressed proteomic analysis in placental tissues in relation to pungency during the pepper fruit development. Proteomics 6: 5248-5259.
    • (2006) Proteomics , vol.6 , pp. 5248-5259
    • Lee, J.M.1    Kim, S.2    Lee, J.Y.3    Yoo, J.Y.4    Cho, M.C.5    Cho, M.R.6    Kim, B.-D.7    Bahk, Y.Y.8
  • 26
    • 0014425059 scopus 로고
    • Biosynthesis of capsaicin and dihydrocapsaicin in Capsicum frutescens
    • Leete E, Louden M (1968) Biosynthesis of capsaicin and dihydrocapsaicin in Capsicum frutescens. J Am Chem Soc 90: 6837-6841.
    • (1968) J Am Chem Soc , vol.90 , pp. 6837-6841
    • Leete, E.1    Louden, M.2
  • 30
    • 33947270459 scopus 로고    scopus 로고
    • Metabolic diversion of the phenylpropanoid pathway causes cell wall and morphological changes in transgenic tobacco stems
    • Merali Z, Mayer MJ, Parker ML, Michael AJ, Smith AC, Waldron KW (2007) Metabolic diversion of the phenylpropanoid pathway causes cell wall and morphological changes in transgenic tobacco stems. Planta 225: 1165-1178.
    • (2007) Planta , vol.225 , pp. 1165-1178
    • Merali, Z.1    Mayer, M.J.2    Parker, M.L.3    Michael, A.J.4    Smith, A.C.5    Waldron, K.W.6
  • 33
  • 35
    • 0001694112 scopus 로고
    • Increased capsaicin content in PFP-resistant cells of chili pepper (Capsicum annuum L.)
    • Salgado-Garciglia R, Ochoa-Alejo N (1990) Increased capsaicin content in PFP-resistant cells of chili pepper (Capsicum annuum L.). Plant Cell Rep 8: 617-620.
    • (1990) Plant Cell Rep , vol.8 , pp. 617-620
    • Salgado-Garciglia, R.1    Ochoa-Alejo, N.2
  • 39
    • 0003332365 scopus 로고
    • Phenylpropanoid metabolism during growth and development of Capsicum frutescens fruits
    • Sukrasno N, Yeoman MM (1993) Phenylpropanoid metabolism during growth and development of Capsicum frutescens fruits. Phytochemistry 32: 839-844.
    • (1993) Phytochemistry , vol.32 , pp. 839-844
    • Sukrasno, N.1    Yeoman, M.M.2
  • 42
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 43
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    • Wang LK, Feng ZX, Wang X, Wang XW, Zhang XG (2010) DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26: 136-138.
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.K.1    Feng, Z.X.2    Wang, X.3    Wang, X.W.4    Zhang, X.G.5
  • 44
    • 79960556397 scopus 로고    scopus 로고
    • Cloning and characterization of a differentially expressed cDNA encoding myo-inositol-1-phosphate synthase involved in response to abiotic stress in Jatropha curcas
    • Wang Y, Huang J, Gou CB, Dai X, Chen F, Wei W (2011) Cloning and characterization of a differentially expressed cDNA encoding myo-inositol-1-phosphate synthase involved in response to abiotic stress in Jatropha curcas. Plant Cell Tissu Org Cult 106: 269-277.
    • (2011) Plant Cell Tissu Org Cult , vol.106 , pp. 269-277
    • Wang, Y.1    Huang, J.2    Gou, C.B.3    Dai, X.4    Chen, F.5    Wei, W.6
  • 45
    • 77953153394 scopus 로고    scopus 로고
    • Transcriptome profile analysis of floral sex determination in cucumber
    • Wu T, Qin Z, Zhou X, Feng Z, Du Y (2010) Transcriptome profile analysis of floral sex determination in cucumber. J Plant Physiol 167: 905-913.
    • (2010) J Plant Physiol , vol.167 , pp. 905-913
    • Wu, T.1    Qin, Z.2    Zhou, X.3    Feng, Z.4    Du, Y.5
  • 46
    • 79957982986 scopus 로고    scopus 로고
    • Identification and characterisation of candidate genes involved in chilling responses in maize (Zea mays L.)
    • Yang G, Zou H, Wu Y, Liu H, Yuan Y (2011) Identification and characterisation of candidate genes involved in chilling responses in maize (Zea mays L.). Plant Cell Tiss Organ Cult 106: 127-141.
    • (2011) Plant Cell Tiss Organ Cult , vol.106 , pp. 127-141
    • Yang, G.1    Zou, H.2    Wu, Y.3    Liu, H.4    Yuan, Y.5
  • 48
    • 80052812291 scopus 로고    scopus 로고
    • Characterization and expression pattern analysis of DcNAC gene in somatic embryos of Dendrobium candidum Wall Ex Lindl
    • Zhao P, Wang W, Sun M (2011) Characterization and expression pattern analysis of DcNAC gene in somatic embryos of Dendrobium candidum Wall Ex Lindl. Plant Cell Tissu Org Cult. 107: 151-159.
    • (2011) Plant Cell Tissu Org Cult , vol.107 , pp. 151-159
    • Zhao, P.1    Wang, W.2    Sun, M.3


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