Deep sequencing-based expression transcriptional profiling changes during Brucella infection

Microbial Pathogenesis

Volumn 52, Issue 5, 2012, Pages 267-277

  Liu, Qianhong ^a,b   Han, Wenyu ^a   Sun, Changjiang ^a   Zhou, Liang ^a   Ma, Limin ^a   Lei, Liancheng ^a   Yan, Shouqing ^a   Liu, Shanshan ^a   Du, Chongtao ^a   Feng, Xin ^a  

^a JILIN UNIVERSITY   (China)

^b Jilin College of Agricultural Science and Technology   (China)

Author keywords

Brucella; Deep sequencing based expression; Infection; Transcription

Indexed keywords

B LYMPHOCYTE RECEPTOR; FC RECEPTOR; NUCLEOTIDE BINDING OLIGOMERIZATION DOMAIN LIKE RECEPTOR; PROTEIN P53; RNA; TOLL LIKE RECEPTOR;

ANIMAL CELL; APOPTOSIS; ARTICLE; BRUCELLA MELITENSIS; BRUCELLOSIS; CONTROLLED STUDY; DATA ANALYSIS; ENDOPLASMIC RETICULUM; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; IMMUNE RESPONSE; LYSOSOME; MACROPHAGE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHAGOCYTOSIS; PRIORITY JOURNAL; PROTEIN PROCESSING; RNA EXTRACTION; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; UNINDEXED SEQUENCE;

ANIMALS; BRUCELLA MELITENSIS; BRUCELLOSIS; CELL LINE; GENE EXPRESSION PROFILING; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MACROPHAGES; MICE; PROTEINS; SIGNAL TRANSDUCTION;

ANIMALIA; BRUCELLA; BRUCELLA MELITENSIS;

EID: 84862787418     PISSN: 08824010     EISSN: 10961208     Source Type: Journal    
DOI: 10.1016/j.micpath.2012.02.001     Document Type: Article

References (38)

1. Aderem A. Phagocytosis and the inflammatory response. J Infect Dis 2003, 187(Suppl. 2):S340-S345.
2. Comerci D.J., Martinez-Lorenzo M.J., Sieira R., Gorvel J.P., Ugalde R.A. Essential role of the VirB machinery in the maturation of the Brucella abortus-containing vacuole. Cell Microbiol 2001, 3:159-168.
3. Arenas G.N., Grilli D.J., Samartino L.E., Magadan J., Mayorga L.S. Brucella alters endocytic pathway in J774 macrophages. Virulence 2010, 1:376-385.
4. Arenas G.N., Staskevich A.S., Aballay A., Mayorga L.S. Intracellular trafficking of Brucella abortus in J774 macrophages. Infect Immun 2000, 68:4255-4263.
5. Pei J., Turse J.E., Ficht T.A. Evidence of Brucella abortus OPS dictating uptake and restricting NF-kappaB activation in murine macrophages. Microbes Infect 2008, 10:582-590.
6. Wang Y., Chen Z., Qiao F., Zhong Z., Xu J., Wang Z., et al. The type IV secretion system affects the expression of Omp25/Omp31 and the outer membrane properties of Brucella melitensis. FEMS Microbiol Lett 2010, 303:92-100.
7. Viadas C., Rodriguez M.C., Sangari F.J., Gorvel J.P., Garcia-Lobo J.M., Lopez-Goni I. Transcriptome analysis of the Brucella abortus BvrR/BvrS two-component regulatory system. PLoS One 2010, 5:e10216.
8. He Y., Reichow S., Ramamoorthy S., Ding X., Lathigra R., Craig J.C., et al. Brucella melitensis triggers time-dependent modulation of apoptosis and down-regulation of mitochondrion-associated gene expression in mouse macrophages. Infect Immun 2006, 74:5035-5046.
9. Eskra L., Mathison A., Splitter G. Microarray analysis of mRNA levels from RAW264.7 macrophages infected with Brucella abortus. Infect Immun 2003, 71:1125-1133.
10. Covert J., Mathison A.J., Eskra L., Banai M., Splitter G. Brucella melitensis, B. neotomae and B. ovis elicit common and distinctive macrophage defense transcriptional responses. Exp Biol Med (Maywood) 2009, 234:1450-1467.
11. Audic S., Claverie J.M. The significance of digital gene expression profiles. Genome Res 1997, 7:986-995.
12. Hoen P.A., Ariyurek Y., Thygesen H.H., Vreugdenhil E., Vossen R.H., de Menezes R.X., et al. Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res 2008, 36:e141.
13. Bricker B.J. PCR as a diagnostic tool for brucellosis. Vet Microbiol 2002, 90:435-446.
14. Wu Q., Pei J., Turse C., Ficht T.A. Mariner mutagenesis of Brucella melitensis reveals genes with previously uncharacterized roles in virulence and survival. BMC Microbiol 2006, 6:102.
15. Pei J., Ficht T.A. Brucella abortus rough mutants are cytopathic for macrophages in culture. Infect Immun 2004, 72:440-450.
16. Allison D.B., Cui X., Page G.P., Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet 2006, 7:55-65.
17. Morrissy A.S., Morin R.D., Delaney A., Zeng T., McDonald H., Jones S., et al. Next-generation tag sequencing for cancer gene expression profiling. Genome Res 2009, 19:1825-1835.
18. Benjamini Y., Drai D., Elmer G., Kafkafi N., Golani I. Controlling the false discovery rate in behavior genetics research. Behav Brain Res 2001, 125:279-284.
19. Rossetti C.A., Galindo C.L., Everts R.E., Lewin H.A., Garner H.R., Adams L.G. Comparative analysis of the early transcriptome of Brucella abortus-infected monocyte-derived macrophages from cattle naturally resistant or susceptible to brucellosis. Res Vet Sci 2011, 91:40-51.
20. Rosenstiel P., Derer S., Till A., Hasler R., Eberstein H., Bewig B., et al. Systematic expression profiling of innate immune genes defines a complex pattern of immunosenescence in peripheral and intestinal leukocytes. Genes Immun 2008, 9:103-114.
21. Weiss D.S., Takeda K., Akira S., Zychlinsky A., Moreno E. MyD88, but not toll-like receptors 4 and 2, is required for efficient clearance of Brucella abortus. Infect Immun 2005, 73:5137-5143.
22. Fernandez-Prada C.M., Zelazowska E.B., Nikolich M., Hadfield T.L., Roop R.M., Robertson G.L., et al. Interactions between Brucella melitensis and human phagocytes: bacterial surface O-Polysaccharide inhibits phagocytosis, bacterial killing, and subsequent host cell apoptosis. Infect Immun 2003, 71:2110-2119.
23. Akira S., Uematsu S., Takeuchi O. Pathogen recognition and innate immunity. Cell 2006, 124:783-801.
24. Verstak B., Nagpal K., Bottomley S.P., Golenbock D.T., Hertzog P.J., Mansell A. MyD88 adapter-like (Mal)/TIRAP interaction with TRAF6 is critical for TLR2- and TLR4-mediated NF-kappaB proinflammatory responses. J Biol Chem 2009, 284:24192-24203.
25. Abreu M.T., Arnold E.T., Thomas L.S., Gonsky R., Zhou Y., Hu B., et al. TLR4 and MD-2 expression is regulated by immune-mediated signals in human intestinal epithelial cells. J Biol Chem 2002, 277:20431-20437.
26. Meng J., Gong M., Bjorkbacka H., Golenbock D.T. Genome-wide expression profiling and mutagenesis studies reveal that lipopolysaccharide responsiveness appears to be absolutely dependent on TLR4 and MD-2 expression and is dependent upon intermolecular ionic interactions. J Immunol 2011, 187:3683-3693.
27. Teghanemt A., Widstrom R.L., Gioannini T.L., Weiss J.P. Isolation of monomeric and dimeric secreted MD-2. Endotoxin.sCD14 and Toll-like receptor 4 ectodomain selectively react with the monomeric form of secreted MD-2. J Biol Chem 2008, 283:21881-21889.
28. Barrionuevo P., Delpino M.V., Velasquez L.N., Garcia Samartino C., Coria L.M., Ibanez A.E., et al. Brucella abortus inhibits IFN-gamma-induced FcgammaRI expression and FcgammaRI-restricted phagocytosis via toll-like receptor 2 on human monocytes/macrophages. Microbes Infect 2011, 13:239-250.
29. Radhakrishnan G.K., Splitter G.A. Biochemical and functional analysis of TIR domain containing protein from Brucella melitensis. Biochem Biophys Res Commun 2010, 397:59-63.
30. Macedo G.C., Magnani D.M., Carvalho N.B., Bruna-Romero O., Gazzinelli R.T., Oliveira S.C. Central role of MyD88-dependent dendritic cell maturation and proinflammatory cytokine production to control Brucella abortus infection. J Immunol 2008, 180:1080-1087.
31. Berguer P.M., Mundinano J., Piazzon I., Goldbaum F.A. A polymeric bacterial protein activates dendritic cells via TLR4. J Immunol 2006, 176:2366-2372.
32. Huang L.Y., Aliberti J., Leifer C.A., Segal D.M., Sher A., Golenbock D.T., et al. Heat-killed Brucella abortus induces TNF and IL-12p40 by distinct MyD88-dependent pathways: TNF, unlike IL-12p40 secretion, is Toll-like receptor 2 dependent. J Immunol 2003, 171:1441-1446.
33. Ryzhakov G., Randow F. SINTBAD, a novel component of innate antiviral immunity, shares a TBK1-binding domain with NAP1 and TANK. EMBO J 2007, 26:3180-3190.
34. Liu X., Zou H., Slaughter C., Wang X. DFF, a heterodimeric protein that functions downstream of caspase-3 to trigger DNA fragmentation during apoptosis. Cell 1997, 89:175-184.
35. Starr T., Ng T.W., Wehrly T.D., Knodler L.A., Celli J. Brucella intracellular replication requires trafficking through the late endosomal/lysosomal compartment. Traffic 2008, 9:678-694.
36. Frese M.A., Schulz S., Dierks T., Arylsulfatase G. A novel lysosomal sulfatase. J Biol Chem 2008, 283:11388-11395.
37. Wartosch L., Stauber T. A role for chloride transport in lysosomal protein degradation. Autophagy 2010, 6:158-159.
38. Sun J., Deghmane A.E., Bucci C., Hmama Z. Detection of activated Rab7 GTPase with an immobilized RILP probe. Methods Mol Biol 2009, 531:57-69.