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Volumn 36, Issue , 2012, Pages 36-41

Using ensemble methods to deal with imbalanced data in predicting protein-protein interactions

Author keywords

Ensemble methods; Imbalanced data; Protein protein interaction

Indexed keywords

CROSS VALIDATION; DATA SETS; ENSEMBLE CLASSIFIERS; ENSEMBLE METHODS; FUSION CLASSIFIERS; IMBALANCED DATA; PREDICTION MODEL; PROTEIN-PROTEIN INTERACTIONS; RECEIVER OPERATING CHARACTERISTIC CURVES; UNDER-SAMPLING;

EID: 84862786552     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2011.12.003     Document Type: Article
Times cited : (34)

References (41)
  • 1
    • 0036789265 scopus 로고    scopus 로고
    • Analyzing yeast protein-protein interaction data obtained from different sources
    • G.D. Bader, and C.W.V. Hogue Analyzing yeast protein-protein interaction data obtained from different sources Nature Biotechnology 20 2002 991 997
    • (2002) Nature Biotechnology , vol.20 , pp. 991-997
    • Bader, G.D.1    Hogue, C.W.V.2
  • 2
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • L. Breiman Bagging predictors Machine Learning 24 1996 123 140 (Pubitemid 126724382)
    • (1996) Machine Learning , vol.24 , Issue.2 , pp. 123-140
    • Breiman, L.1
  • 3
    • 0020371598 scopus 로고
    • The structural dependence of amino acid hydrophobicity parameters
    • DOI 10.1016/0022-5193(82)90191-6
    • M. Charton, and B.I. Charton The structural dependence of amino acid hydrophobicity parameters Journal of Theoretical Biology 99 1982 629 644 (Pubitemid 13192303)
    • (1982) Journal of Theoretical Biology , vol.99 , Issue.4 , pp. 629-644
    • Charton, M.1    Charton, B.I.2
  • 5
    • 33750117549 scopus 로고    scopus 로고
    • Pruning support vectors for imbalanced data classification
    • DOI 10.1109/IJCNN.2005.1556167, 1556167, Proceedings of the International Joint Conference on Neural Networks, IJCNN 2005
    • X. Chen, B. Gerlach, and D. Casasent Pruning support vectors for imbalanced data classification Proceedings of the International Joint Conference on Neural Networks 2005 1883 1888 (Pubitemid 44591487)
    • (2005) Proceedings of the International Joint Conference on Neural Networks , vol.3 , pp. 1883-1888
    • Chen, X.-W.1    Gerlach, B.2    Casasent, D.3
  • 6
    • 33646107181 scopus 로고    scopus 로고
    • Learning from imbalanced data in surveillance of nosocomial infection
    • G. Cohen Learning from imbalanced data in surveillance of nosocomial infection Artificial Intelligence in Medicine 37 2006 7 18
    • (2006) Artificial Intelligence in Medicine , vol.37 , pp. 7-18
    • Cohen, G.1
  • 7
    • 77950188774 scopus 로고    scopus 로고
    • Evaluation of ensemble methods for diagnosing of valvular heart disease
    • R. Das, and A. Sengur Evaluation of ensemble methods for diagnosing of valvular heart disease Expert Systems with Applications 37 2010 5110 5115
    • (2010) Expert Systems with Applications , vol.37 , pp. 5110-5115
    • Das, R.1    Sengur, A.2
  • 8
    • 84867577175 scopus 로고    scopus 로고
    • The foundations of cost-sensitive learning
    • C. Elkan The foundations of cost-sensitive learning Citeseer 2001 973 978
    • (2001) Citeseer , pp. 973-978
    • Elkan, C.1
  • 9
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • A.J. Enright Protein interaction maps for complete genomes based on gene fusion events Nature 402 1999 86 90
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1
  • 10
    • 33644555054 scopus 로고    scopus 로고
    • Proteome survey reveals modularity of the yeast cell machinery
    • A.C. Gavin Proteome survey reveals modularity of the yeast cell machinery Nature 440 2006 631 636
    • (2006) Nature , vol.440 , pp. 631-636
    • Gavin, A.C.1
  • 11
    • 0016197604 scopus 로고
    • Amino acid difference formula to help explain protein evolution
    • R. Grantham Amino acid difference formula to help explain protein evolution Science 185 1974 862
    • (1974) Science , vol.185 , pp. 862
    • Grantham, R.1
  • 12
    • 44349159560 scopus 로고    scopus 로고
    • Using support vector machine combined with auto covariance to predict protein Cprotein interactions from protein sequences
    • Y. Guo Using support vector machine combined with auto covariance to predict protein Cprotein interactions from protein sequences Nucleic Acids Research 36 2008 3025
    • (2008) Nucleic Acids Research , vol.36 , pp. 3025
    • Guo, Y.1
  • 13
    • 24944442468 scopus 로고    scopus 로고
    • Effect of sampling on topology predictions of protein-protein interaction networks
    • J.D.J. Han Effect of sampling on topology predictions of protein-protein interaction networks Nature Biotechnology 23 2005 839 844
    • (2005) Nature Biotechnology , vol.23 , pp. 839-844
    • Han, J.D.J.1
  • 17
    • 34547560275 scopus 로고    scopus 로고
    • WoLF PSORT: Protein localization predictor
    • P. Horton WoLF PSORT: protein localization predictor Nucleic Acids Research 35 2007 W585
    • (2007) Nucleic Acids Research , vol.35 , pp. 585
    • Horton, P.1
  • 18
    • 5044220135 scopus 로고    scopus 로고
    • Learning classifiers from imbalanced data based on biased minimax probability machine
    • K. Huang Learning classifiers from imbalanced data based on biased minimax probability machine Computer Vision and Pattern Recognition 2 2004 558 563
    • (2004) Computer Vision and Pattern Recognition , vol.2 , pp. 558-563
    • Huang, K.1
  • 23
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    • N.J. Krogan Global landscape of protein complexes in the yeast Saccharomyces cerevisiae Nature 440 2006 637 643
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1
  • 25
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • W. Li, and A. Godzik Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences Bioinformatics 22 2006 1658
    • (2006) Bioinformatics , vol.22 , pp. 1658
    • Li, W.1    Godzik, A.2
  • 26
    • 78049530598 scopus 로고    scopus 로고
    • Two-level hierarchical combination method for text classification
    • W. Li, D. Miao, and W. Wang Two-level hierarchical combination method for text classification Expert Systems with Applications 38 2010 2030 2039
    • (2010) Expert Systems with Applications , vol.38 , pp. 2030-2039
    • Li, W.1    Miao, D.2    Wang, W.3
  • 28
    • 0033534751 scopus 로고    scopus 로고
    • Imbalanced expression of functionally different WT1 isoforms may contribute to sporadic unilateral Wilms' tumor
    • J.J. Liu Imbalanced expression of functionally different WT1 isoforms may contribute to sporadic unilateral Wilms' tumor Biochemical and Biophysical Research Communications 254 1999 197 199
    • (1999) Biochemical and Biophysical Research Communications , vol.254 , pp. 197-199
    • Liu, J.J.1
  • 29
    • 0033301555 scopus 로고    scopus 로고
    • Use of contiguity on the chromosome to predict functional coupling
    • R. Overbeek Use of contiguity on the chromosome to predict functional coupling In silico Biology 1 1998 93 108
    • (1998) Silico Biology , vol.1 , pp. 93-108
    • Overbeek, R.1
  • 31
    • 0022412192 scopus 로고
    • Hydrophobicity of amino acid residues in globular proteins
    • G.D. Rose Hydrophobicity of amino acid residues in globular proteins Science 229 1985 834
    • (1985) Science , vol.229 , pp. 834
    • Rose, G.D.1
  • 32
    • 33847668306 scopus 로고    scopus 로고
    • Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    • H.B. Shen, and K.C. Chou Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites Biochemical and Biophysical Research Communications 355 2007 1006 1011
    • (2007) Biochemical and Biophysical Research Communications , vol.355 , pp. 1006-1011
    • Shen, H.B.1    Chou, K.C.2
  • 33
    • 0038519321 scopus 로고
    • Contribution of hydrophobic interactions to the stability of the globular conformation of proteins
    • C. Tanford Contribution of hydrophobic interactions to the stability of the globular conformation of proteins Journal of the American Chemical Society 84 1962 4240 4247
    • (1962) Journal of the American Chemical Society , vol.84 , pp. 4240-4247
    • Tanford, C.1
  • 39
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
    • I. Xenarios DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions Nucleic Acids Research 30 2002 303
    • (2002) Nucleic Acids Research , vol.30 , pp. 303
    • Xenarios, I.1
  • 40
    • 58349090428 scopus 로고    scopus 로고
    • Cluster-based under-sampling approaches for imbalanced data distributions
    • S.J. Yen, and Y.S. Lee Cluster-based under-sampling approaches for imbalanced data distributions Expert Systems with Applications 36 2009 5718 5727
    • (2009) Expert Systems with Applications , vol.36 , pp. 5718-5727
    • Yen, S.J.1    Lee, Y.S.2
  • 41
    • 33750452703 scopus 로고    scopus 로고
    • Genetic algorithm-based virtual screening of combinative mode for peptide/protein
    • P. Zhou Genetic algorithm-based virtual screening of combinative mode for peptide/protein Huaxue Xuebao 64 2006 691 697 (Pubitemid 44655448)
    • (2006) Acta Chimica Sinica , vol.64 , Issue.7 , pp. 691-697
    • Zhou, P.1    Tian, F.-F.2    Li, B.3    Wu, S.-R.4    Li, Z.-L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.