Genotypic analyses of uropathogenic Escherichia coli based on fimH single nucleotide polymorphisms (SNPs)

Journal of Medical Microbiology

Volumn 56, Issue 10, 2007, Pages 1363-1369

  Tartof, Sara Y ^a   Solberg, Owen D ^a   Riley, Lee W ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; CONTROLLED STUDY; COST BENEFIT ANALYSIS; FIMH GENE; GENETIC ANALYSIS; GENOTYPE; HUMAN; NORMAL HUMAN; PHYLOGENY; PRIORITY JOURNAL; SCREENING TEST; SINGLE NUCLEOTIDE POLYMORPHISM; URINARY TRACT INFECTION; UROPATHOGENIC ESCHERICHIA COLI;

ADHESINS, ESCHERICHIA COLI; ANIMALS; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; FIMBRIAE PROTEINS; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE HOMOLOGY; URINARY TRACT INFECTIONS;

EID: 36148951022     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.47262-0     Document Type: Article

References (38)

1. Abraham, S. N., Sun, D., Dale, J. B. & Beachey, E. H. (1988). Conservation of the D-mannose-adhesion protein among type 1 fimbriated members of the family Enterobacteriaceae. Nature 336, 682-684.
2. Connell, I., Agace, W., Klemm, P., Schembri, M., Marild, S. & Svanborg, C. (1996). Type 1 fimbrial expression enhances Escherichia coli virulence for the urinary tract. Proc Natl Acad Sci U S A 93, 9827-9832.
3. Eden, C. S., Hanson, L. A., Jodal, U., Lindberg, U. & Akerlund, A. S. (1976). Variable adherence to normal human urinary-tract epithelial cells of Escherichia coli strains associated with various forms of urinary-tract infection. Lancet 1, 490-492.
4. Francis, N. R., Sosinsky, G. E., Thomas, D. & DeRosier, D. J. (1994). Isolation, characterization and structure of bacterial flagellar motors containing the switch complex. J Mol Biol 235, 1261-1270.
5. Guyer, D. M., Radulovic, S., Jones, F. E. & Mobley, H. L. (2002). Sat, the secreted autotransporter toxin of uropathogenic Escherichia coli, is a vacuolating cytotoxin for bladder and kidney epithelial cells. Infect Immun 70, 4539-4546.
6. Holmberg, S. D., Wachsmuth, I. K., Hickman-Brenner, F. W. & Cohen, M. L. (1984). Comparison of plasmid profile analysis, phage typing, and antimicrobial susceptibility testing in characterizing Salmonella typhimurium isolates from outbreaks. J Clin Microbiol 19, 100-104.
7. Hommais, F., Gouriou, S., Amorin, C., Bui, H., Rahimy, M. C., Picard, B. & Denamur, E. (2003). The FimH A27V mutation is pathoadaptive for urovirulence in Escherichia coli B2 phylogenetic group isolates. Infect Immun 71, 3619-3622.
8. Hung, C. S., Bouckaert, J., Hung, D., Pinkner, J., Widberg, C., DeFusco, A., Auguste, C. G., Strouse, R., Langermann, S. & other authors (2002). Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection. Mol Microbiol 44, 903-915.
9. Iino, T., Komeda, Y., Kutsukake, K., Macnab, R. M., Matsumura, P., Parkinson, J. S., Simon, M. I. & Yamaguchi, S. (1988). New unified nomenclature for the flagellar genes of Escherichia coli and Salmonella typhimurium. Microbiol Rev 52, 533-535.
10. Ikeda, T., Asakura, S. & Kamiya, R. (1985). "Cap" on the tip of Salmonella flagella. J Mol Biol 184, 735-737.
11. Johnson, J. R. (1991). Virulence factors in Escherichia coli urinary tract infection. Clin Microbiol Rev 4, 80-128.
12. Johnson, J. R. (2003). Microbial virulence determinants and the pathogenesis of urinary tract infection. Infect Dis Clin North Am 17, 261-278.
13. Johnson, J. R. & Kuskowski, M. (2000). Clonal origin, virulence factors, and virulence. Infect Immun 68, 424-425.
14. Johnson, J. R. & Stell, A. L. (2000). Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. J Infect Dis 181, 261-272.
15. E. coli, among Escherichia coli isolates from patients with urosepsis. Infect Immun 68, 3040-3047.
16. Johnson, J. R., Delavari, P., Kuskowski, M. & Stell, A. L. (2001). Phylogenetic distribution of extraintestinal virulence-associated traits in Escherichia coli. J Infect Dis 183, 78-88.
17. Johnson, J. R., Manges, A. R., O'Bryan, T. T. & Riley, L. W. (2002). A disseminated multidrug-resistant clonal group of uropathogenic Escherichia coli in pyelonephritis. Lancet 359, 2249-2251.
18. Johnson, J. R., Murray, A. C., Gajewski, A, Sullivan, M., Snippes, P., Kuskowski, M. A. & Smith, K. E. (2003). Isolation and molecular characterization of nalidixic acid-resistant extraintestinal pathogenic Escherichia coli from retail chicken products. Antimicrob Agents Chemother 47, 2161-2168.
19. Johnson, J. R., Kuskowski, M. A., Gajewski, A., Soto, S., Horcajada, J. P., Jimenez de Anta, M. T. & Vila, J. (2005a). Extended virulence genotypes and phylogenetic background of Escherichia colt isolates from patients with cystitis, pyelonephritis, or prostatitis. J Infect Dis 191, 46-50.
20. Johnson, J. R., Owens, K., Gajewski, A. & Kuskowski, M. A. (2005b). Bacterial characteristics in relation to clinical source of Escherichia coli isolates from women with acute cystitis or pyelonephritis and uninfected women. J Clin Microbiol 43, 6064-6072.
21. Klemm, P. & Christiansen, G. (1987). Three fim genes required for the regulation of length and mediation of adhesion of Escherichia coli type 1 fimbriae. Mol Gen Genet 208, 439-445.
22. Klumpp, D. J., Forrestal, S. G., Karr, J. E., Mudge, C. S., Anderson, B. E. & Schaeffer, A. J. (2002). Epithelial differentiation promotes the adherence of type 1-piliated Escherichia colt to human vaginal cells. J Infect Dis 186, 1631-1638.
23. Krogfelt, K. A., Bergmans, H. & Klemm, P. (1990). Direct evidence that the FimH protein is the mannose-specific adhesin of Escherichia coli type 1 fimbriae. Infect Immun 58, 1995-1998.
24. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
25. Lane, M. C., Lockatell, V., Monterosso, G., Lamphier, D., Weinert, J., Hebel, J. R., Johnson, D. E. & Mobley, H. L. (2005). Role of motility in the colonization of uropathogenic Escherichia coli in the urinary tract. Infect Immun 73, 7644-7656.
26. Macnab, R. M. (1987). Flagella. In Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology, pp. 70-83. Edited by F. C. Neidhardt, K. B. Low, J. Ingraham, B. Magasanik, M. Schaechter &. H. E. Umbarger. Washington, DC: American Society for Microbiology.
27. Maiden, M. C., Bygraves, J. A., Feil, E., Morelli, G., Russell, J. E., Urwin, R., Zhang, Q., Zhou, J., Zurth, K. & other authors (1998). Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95, 3140-3145.
28. Manges, A. R., Johnson, J. R., Foxman, B., O'Bryan, T. T., Fullerton, K. E. & Riley, L. W. (2001). Widespread distribution of urinary tract infections caused by a multidrug-resistant Escherichia coli clonal group. N Engl J Med 345, 1007-1013.
29. Manges, A. R., Natarajan, P., Solberg, O. D., Dietrich, P. S. & Riley, L. W. (2006). The changing prevalence of drug-resistant Escherichia coli clonal groups in a community: evidence for community outbreaks of urinary tract infections. Epidemiol Infect 134, 425-431.
30. Mobley, H. L., Island, M. D. & Massad, G. (1994). Virulence determinants of uropathogenic Escherichia coli and Proteus mirabilis. Kidney Int Suppl 47, S129-S136.
31. Phillips, I., Eykyn, S., King, A., Gransden, W. R., Rowe, B., Frost, J. A. & Gross, R. J. (1988). Epidemic multiresistant Escherichia coli infection in West Lambeth Health District. Lancet 1, 1038-1041.
32. Ramchandani, M., Manges, A. R., DebRoy, C., Smith, S. P., Johnson, J. R. & Riley, L. W. (2005). Possible animal origin of human-associated, multidrug-resistant, uropathogenic Escherichia coli. Clin Infect Dis 40, 251-257.
33. Russo, T. A. & Johnson, J. R. (2000). Proposal for a new inclusive designation for extraintestinal pathogenic isolates of Escherichia coli: ExPEC. J Infect Dis 181, 1753-1754.
34. Russo, T. A., Carlino, U. B. & Johnson, J. R. (2001). Identification of a new iron-regulated virulence gene, ireA, in an extraintestinal pathogenic isolate of Escherichia coli. Infect Immun 69, 6209-6216.
35. Schappert, S. M. & Burt, C. W. (2006). Ambulatory care visits to physician offices, hospital outpatient departments, and emergency departments: United States, 2001-02. Vital Health Stat 13 159, 1-66.
36. Schembri, M. A., Sokurenko, E. V. & Klemm, P. (2000). Functional flexibility of the FimH adhesin: insights from a random mutant library. Infect Immun 68, 2638-2646.
37. Sokurenko, E. V., Chesnokova, V., Doyle, R. J. & Hasty, D. L. (1997). Diversity of the Escherichia coli type 1 fimbrial lectin. Differential binding to mannosides and uroepithelial cells. J Biol Chem 272, 17880-17886.
38. Sokurenko, E. V., Chesnokova, V., Dykhuizen, D. E., Ofek, I., Wu, X. R., Krogfelt, K. A, Struve, C., Schembri, M. A. & Hasty, D. L. (1998). Pathogenic adaptation of Escherichia coli by natural variation of the FimH adhesin. Proc Natl Acad Sci U S A 95, 8922-8926.