Towards improved accuracy of Bordetella pertussis nucleic acid amplification tests

Journal of Clinical Microbiology

Volumn 50, Issue 7, 2012, Pages 2186-2190

  Loeffelholz, Michael ^a  

^a University of Texas Medical Branch School of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; PERTUSSIS TOXIN; PERTUSSIS VACCINE;

AMPLICON; BACTERIAL GENOME; BACTERIAL TRANSMISSION; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BORDETELLA; BORDETELLA BRONCHISEPTICA; BORDETELLA HOLMESII; BORDETELLA PARAPERTUSSIS; BORDETELLA PERTUSSIS; CLINICAL FEATURE; DIAGNOSTIC ACCURACY; EPIDEMIC; FALSE POSITIVE RESULT; GENE DOSAGE; GENE INSERTION SEQUENCE; GENE TARGETING; HUMAN; LABORATORY TEST; NONHUMAN; NUCLEIC ACID AMPLIFICATION; PERTUSSIS; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RISK BENEFIT ANALYSIS; SENSITIVITY AND SPECIFICITY; SHORT SURVEY; SPECIES DIFFERENCE; STAINING; TOTAL QUALITY MANAGEMENT; VACCINATION;

BACTERIOLOGICAL TECHNIQUES; BIOMEDICAL RESEARCH; BORDETELLA PERTUSSIS; FALSE POSITIVE REACTIONS; HUMANS; MOLECULAR DIAGNOSTIC TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SENSITIVITY AND SPECIFICITY; WHOOPING COUGH;

EID: 84862744770     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00612-12     Document Type: Short Survey

References (39)

1. Antila M, et al. 2006. Bordetella holmesii DNA is not detected in nasopharyngeal swabs from Finnish and Dutch patients with suspected pertussis. J. Med. Microbiol. 55:1043-1051.
2. Centers for Disease Control and Prevention. 2007. Outbreaks of respiratory illness mistakenly attributed to pertussis-New Hampshire, Massachusetts, and Tennessee, 2004-2006.MMWRMorb. Mortal. Wkly. Rep. 56:837-842.
3. Cherry JD. 2005. The epidemiology of pertussis: a comparison of the epidemiology of the disease pertussis with the epidemiology of Bordetella pertussis infection. Pediatrics 115:1422-1427.
4. Douglas E, Coote JG, Parton R, McPheat W. 1993. Identification of Bordetella pertussis in nasopharyngeal swabs by PCR amplification of a region of the adenylate cyclase gene. J. Med. Microbiol. 38:140-144.
5. Edelman K, et al. 1996. Detection of Bordetella pertussis by polymerase chain reaction and culture in the nasopharynx of erythromycin-treated infants with pertussis. Pediatr. Infect. Dis. J. 15:54-57.
6. Farrell DJ, et al. 2000. Rapid-cycle PCR method to detect Bordetella pertussis that fulfills all consensus recommendations for use of PCR in diagnosis of pertussis. J. Clin. Microbiol. 38:4499-4502.
7. Glare EM, Paton JC, Premier RR, Lawrence AJ, Nisbet IT. 1990. Analysis of a repetitive DNA sequence from Bordetella pertussis and its application to the diagnosis of pertussis using the polymerase chain reaction. J. Clin. Microbiol. 28:1982-1987.
8. Guthrie JL, Robertson AV, Tang P, Jamieson F, Drews SJ. 2010. Novel duplex real-time PCR assay detects Bordetella holmesii in specimens from patients with pertussis-like symptoms in Ontario, Canada. J. Clin. Microbiol. 48:1435-1437.
9. Guthrie JL, et al. 2008. Use of Bordetella pertussis BP3385 to establish a cutoff value for an IS481-targeted real-time PCR assay. J. Clin. Microbiol. 46:3798-3799.
10. He Q, et al. 1996. Impact of polymerase chain reaction on clinical pertussis research: Finnish and Swiss experiences. J. Infect. Dis. 174:1288-1295.
11. Houard S, Hackel C, Herzog A, Bollen A. 1989. Specific identification of Bordetella pertussis by the polymerase chain reaction. Res. Microbiol. 140:477-487.
12. Hozbor D, Fouque F, Guiso N. 1999. Detection of Bordetella bronchiseptica by the polymerase chain reaction. Res. Microbiol. 150:333-341.
13. Kamachi K, et al. 2006. Development and evaluation of a loop-mediated isothermal amplification method for rapid diagnosis of Bordetella pertussis infection. J. Clin. Microbiol. 44:1899-1902.
14. Koidl C, et al. 2007. Detection and differentiation of Bordetella spp. by real-time PCR. J. Clin. Microbiol. 45:347-350.
15. Kösters K, Riffelmann M, Wirsing von König CH. 2001. Evaluation of a real-time PCR assay for detection of Bordetella pertussis and B. parapertussis in clinical samples. J. Med. Microbiol. 50:436-440.
16. Lanotte P, et al. 2011. Evaluation of four commercial real-time PCR assays for detection of Bordetella spp. in nasopharyngeal aspirates. J. Clin. Microbiol. 49:3943-3946.
17. Lievano FA, et al. 2002. Issues associated with and recommendations for using PCR to detect outbreaks of pertussis. J. Clin. Microbiol. 40:2801-2805.
18. Loeffelholz MJ, Thompson CJ, Long KS, Gilchrist MJ. 1999. Comparison of PCR, culture, and direct fluorescent-antibody testing for detection of Bordetella pertussis. J. Clin. Microbiol. 37:2872-2876.
19. Mandal S, et al. 2012. Pertussis pseudo-outbreak linked to specimens contaminated by Bordetella pertussis DNA from clinic surfaces. Pediatrics [Epub ahead of print.] doi:10.1542/peds.2011-1710.
20. Mattoo S, Cherry JD. 2005. Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies. Clin. Microbiol. Rev. 18:326-382.
21. Njamkepo E, et al. 2011. Significant finding of Bordetella holmesii DNA in nasopharyngeal samples from French patients with suspected pertussis. J. Clin. Microbiol. 49:4347-4348.
22. Nygren M, Reizenstein E, Ronaghi M, Lundeberg J. 2000. Polymorphism in the pertussis toxin promoter region affecting the DNA-based diagnosis of Bordetella infection. J. Clin. Microbiol. 38:55-60.
23. Papenburg J and P Fontela. 2009. What is the significance of a high cycle threshold positive IS481 PCR for Bordetella pertussis? Pediatr. Infect. Dis. J. 28:1143, author reply 1143-1144.
24. Probert WS, et al. 2008. Identification and evaluation of new target sequences for specific detection of Bordetella pertussis by real-time PCR. J. Clin. Microbiol. 46:3228-3231.
25. Qin X, Galanakis E, Martin ET, Englund JA. 2007. Multitarget PCR for diagnosis of pertussis and its clinical implications. J. Clin. Microbiol. 45:506-511.
26. Register KB, Nicholson TL, Guthrie JL. 2010. Evaluation of specificity of BP3385 for Bordetella pertussis detection. J. Clin. Microbiol. 48:3334-3337.
27. Register KB, Nicholson TL. 2007. Misidentification of Bordetella bronchiseptica as Bordetella pertussis using a newly described real-time PCR targeting the pertactin gene. J. Med. Microbiol. 56:1608-1610.
28. Reischl U, Lehn N, Sanden GN, Loeffelholz MJ. 2001. Real-time PCR assay targeting IS481 of Bordetella pertussis and molecular basis for detecting Bordetella holmesii. J. Clin. Microbiol. 39:1963-1966.
29. Roorda L, Buitenwerf J, Ossewaarde JM, van der Zee A. 2011. A real-time PCR assay with improved specificity for detection and discrimination of all clinically relevant Bordetella species by the presence of distribution of three insertion sequence elements. BMC Res. Notes 4:11.
30. Salimnia H, et al. 2012. An unexpected source of false-positive Bordetella pertussis PCR: aerosolized vaccine. J. Clin. Microbiol. 50:472-474.
31. Tatti KM, Sparks KN, Boney KO, Lucia Tondella M. 2011. Novel multitarget real-time PCR assay for rapid detection of Bordetella species in clinical specimens. J. Clin. Microbiol. 49:4059-4066.
32. Tatti KM, et al. 2008. Development and evaluation of dual-target realtime polymerase chain reaction assays to detect Bordetella spp. Diagn. Microbiol. Infect. Dis. 61:264-272.
33. van der Zee A, Agterberg C, Peeters M, Mooi F, Schellekens J. 1996. A clinical validation of Bordetella pertussis and Bordetella parapertussis polymerase chain reaction: comparison with culture and serology using samples from patients with suspected whooping cough from a highly immunized population. J. Infect. Dis. 174:89-96.
34. van der Zee A, Groenendijk H, Peeters M, Mooi FR. 1996. The differentiation of Bordetella parapertussis and Bordetella bronchiseptica from humans and animals as determined by DNA polymorphism mediated by two different insertion sequence elements suggests their phylogenetic relationship. Int. J. Syst. Bacteriol. 46:640-647.
35. van der Zee A, Agterberg C, van Agterveld M, Peeters M, Mooi FR. 1993. Characterization of IS1001, an insertion sequence element of Bordetella parapertussis. J. Bacteriol. 175:141-147.
36. Vincart B, et al. 2007. A specific real-time PCR assay for the detection of Bordetella pertussis. J. Med. Microbiol. 56:918-920.
37. Weber DJ, Miller MB, Brooks RH, Brown VM, Rutala WA. 2010. Healthcare worker with "pertussis": consequences of a false-positive polymerase chain reaction test result. Infect. Control Hosp. Epidemiol. 31:306-307.
38. Woolfrey BF, Moody JA. 1991. Human infections associated with Bordetella bronchiseptica. Clin. Microbiol. Rev. 4:243-255.
39. Yih WK, et al. 1999. Bordetella holmesii-like organisms isolated from Massachusetts patients with pertussis-like symptoms. Emerg. Infect. Dis. 5:441-443.