메뉴 건너뛰기




Volumn 84, Issue 8, 2012, Pages 1157-1165

Sequencing and phylogenetic analysis of the hexon, fiber, and penton regions of adenoviruses isolated from AIDS patients

Author keywords

Molecular evolution; Molecular typing; Viral recombination

Indexed keywords

ADENOVIRUS; AIDS PATIENT; ARTICLE; DNA STRUCTURE; FIBER KNOB REGION; GENETIC RECOMBINATION; GENETIC VARIABILITY; HEXON REGION; NONHUMAN; NUCLEOTIDE SEQUENCE; PENTON REGION; PHYLOGENETIC TREE; PHYLOGENY; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE; VIRUS ISOLATION; VIRUS TYPING;

EID: 84862698357     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23331     Document Type: Article
Times cited : (14)

References (39)
  • 1
    • 80052769509 scopus 로고    scopus 로고
    • Sequence typing of adenovirus from samples from hematological stem cell transplant recipients
    • Al Qurashi YMA, Guiver M, Cooper RJ. 2011. Sequence typing of adenovirus from samples from hematological stem cell transplant recipients. J Med Virol 83: 1951-1958.
    • (2011) J Med Virol , vol.83 , pp. 1951-1958
    • Al Qurashi, Y.M.A.1    Guiver, M.2    Cooper, R.J.3
  • 2
    • 77951725120 scopus 로고    scopus 로고
    • A commercial real-time PCR kit provides greater sensitivity than direct sequencing to detect KRAS mutations: A morphology-based approach in colorectal carcinoma
    • Angulo B, García-García E, Martínez R, Suárez-Gauthier A, Conde E, Hidalgo M, López-Ríos F. 2010. A commercial real-time PCR kit provides greater sensitivity than direct sequencing to detect KRAS mutations: A morphology-based approach in colorectal carcinoma. J Mol Diagn 12: 292-299.
    • (2010) J Mol Diagn , vol.12 , pp. 292-299
    • Angulo, B.1    García-García, E.2    Martínez, R.3    Suárez-Gauthier, A.4    Conde, E.5    Hidalgo, M.6    López-Ríos, F.7
  • 6
    • 0030588209 scopus 로고    scopus 로고
    • Adenovirus serotype evolution is driven by illegitimate recombination in the hypervariable regions of the hexon protein
    • Crawford-Miksza LK, Schnurr DP. 1996. Adenovirus serotype evolution is driven by illegitimate recombination in the hypervariable regions of the hexon protein. Virology 224: 357-367.
    • (1996) Virology , vol.224 , pp. 357-367
    • Crawford-Miksza, L.K.1    Schnurr, D.P.2
  • 7
    • 70849124959 scopus 로고    scopus 로고
    • Phylogeny and primary structure analysis of fiber shafts of all human adenovirus types for rational design of adenoviral gene-therapy vectors
    • Darr S, Madisch I, Hofmayer S, Rehren F, Heim A. 2009. Phylogeny and primary structure analysis of fiber shafts of all human adenovirus types for rational design of adenoviral gene-therapy vectors. J Gen Virol 90: 2849-2854.
    • (2009) J Gen Virol , vol.90 , pp. 2849-2854
    • Darr, S.1    Madisch, I.2    Hofmayer, S.3    Rehren, F.4    Heim, A.5
  • 9
    • 54249125346 scopus 로고    scopus 로고
    • Adenoviruses in immunocompromised hosts
    • Echavarria M. 2008. Adenoviruses in immunocompromised hosts. Clin Microbiol Rev 21: 704-715.
    • (2008) Clin Microbiol Rev , vol.21 , pp. 704-715
    • Echavarria, M.1
  • 10
    • 26444538909 scopus 로고    scopus 로고
    • Comparative sequence analysis of the hexon gene in the entire spectrum of human adenovirus serotypes: Phylogenetic, taxonomic and clinical implications
    • Ebner K, Pinsker W, Lion T. 2005. Comparative sequence analysis of the hexon gene in the entire spectrum of human adenovirus serotypes: Phylogenetic, taxonomic and clinical implications. J Virol 79: 12635-12642.
    • (2005) J Virol , vol.79 , pp. 12635-12642
    • Ebner, K.1    Pinsker, W.2    Lion, T.3
  • 11
    • 0030464460 scopus 로고    scopus 로고
    • Seaview and Phylo_Win: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C. 1996. Seaview and Phylo_Win: Two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543-548.
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 13
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 14
    • 0026771406 scopus 로고
    • Adenoviruses in the immunocompromised host
    • Hierholzer JC. 1992. Adenoviruses in the immunocompromised host. Clin Microbiol Rev 5: 262-274.
    • (1992) Clin Microbiol Rev , vol.5 , pp. 262-274
    • Hierholzer, J.C.1
  • 15
    • 0024242432 scopus 로고
    • Analysis of antigenically intermediate strains of subgenus B and D adenoviruses from AIDS patients
    • Hierholzer JC, Adrian T, Anderson LJ, Wigand R, Gold JW. 1988a. Analysis of antigenically intermediate strains of subgenus B and D adenoviruses from AIDS patients. Arch Virol 103: 99-115.
    • (1988) Arch Virol , vol.103 , pp. 99-115
    • Hierholzer, J.C.1    Adrian, T.2    Anderson, L.J.3    Wigand, R.4    Gold, J.W.5
  • 16
    • 0023819446 scopus 로고
    • Adenoviruses from patients with AIDS: A plethora of serotypes and a description of five new serotypes of subgenus D (types 43-47)
    • Hierholzer JC, Wigand R, Anderson LJ, Adrian T, Gold JW. 1988b. Adenoviruses from patients with AIDS: A plethora of serotypes and a description of five new serotypes of subgenus D (types 43-47). J Inf Dis 158: 804-813.
    • (1988) J Inf Dis , vol.158 , pp. 804-813
    • Hierholzer, J.C.1    Wigand, R.2    Anderson, L.J.3    Adrian, T.4    Gold, J.W.5
  • 17
    • 0000089873 scopus 로고    scopus 로고
    • Adenoviruses
    • Knipe DM, Howley PM, editors. 5th edition. Philadelphia: Lippincott Williams & Wilkins
    • Horwitz MS. 2001. In: Adenoviruses, Knipe DM, Howley PM, editors. Fields virology. 5th edition. Philadelphia: Lippincott Williams & Wilkins, pp 2301-2326.
    • (2001) Fields virology , pp. 2301-2326
    • Horwitz, M.S.1
  • 19
    • 67649229999 scopus 로고    scopus 로고
    • Analysis of the complete genome sequence of epidemic keratoconjunctivitis-related human adenovirus type 8, 19 37 and a novel serotype
    • Kaneko H, Iida T, Ishiko H, Ohguchi T, Ariga T, Tagawa Y, Aoki K, Ohno S, Suzutani T. 2009. Analysis of the complete genome sequence of epidemic keratoconjunctivitis-related human adenovirus type 8, 19 37 and a novel serotype. J Gen Virol 90: 1471-1476.
    • (2009) J Gen Virol , vol.90 , pp. 1471-1476
    • Kaneko, H.1    Iida, T.2    Ishiko, H.3    Ohguchi, T.4    Ariga, T.5    Tagawa, Y.6    Aoki, K.7    Ohno, S.8    Suzutani, T.9
  • 20
    • 0029131248 scopus 로고
    • Adenovirus infections in human immunodeficiency virus-positive patients: Clinical features and molecular epidemiology
    • Khoo SH, Bailey AS, de Jong JC, Mandal BK. 1995. Adenovirus infections in human immunodeficiency virus-positive patients: Clinical features and molecular epidemiology. J Inf Dis 172: 629-637.
    • (1995) J Inf Dis , vol.172 , pp. 629-637
    • Khoo, S.H.1    Bailey, A.S.2    de Jong, J.C.3    Mandal, B.K.4
  • 21
    • 0038029587 scopus 로고    scopus 로고
    • The impact of adenovirus infection on the immunocompromised host
    • Kojaoghlanian T, Flomenberg P, Horwitz MS. 2003. The impact of adenovirus infection on the immunocompromised host. Rev Med Virol 13: 155-171.
    • (2003) Rev Med Virol , vol.13 , pp. 155-171
    • Kojaoghlanian, T.1    Flomenberg, P.2    Horwitz, M.S.3
  • 22
    • 12744253470 scopus 로고    scopus 로고
    • Adenovirus as an emerging pathogen in immunocompromised patients
    • Leen AM, Rooney CM. 2005. Adenovirus as an emerging pathogen in immunocompromised patients. Br J Haematol 128: 135-144.
    • (2005) Br J Haematol , vol.128 , pp. 135-144
    • Leen, A.M.1    Rooney, C.M.2
  • 23
    • 33746172085 scopus 로고    scopus 로고
    • Molecular typing of human adenoviruses by PCR and sequencing of a partial region of the hexon gene
    • Lu X, Erdman DD. 2006. Molecular typing of human adenoviruses by PCR and sequencing of a partial region of the hexon gene. Arch Virol 151: 1587-1602.
    • (2006) Arch Virol , vol.151 , pp. 1587-1602
    • Lu, X.1    Erdman, D.D.2
  • 25
    • 29744470594 scopus 로고    scopus 로고
    • Phylogenetic analysis of the main neutralization and hemagglutination determinants of all human adenovirus prototypes as a basis for molecular classification and taxonomy
    • Madisch I, Harste G, Pommer H, Heim A. 2005. Phylogenetic analysis of the main neutralization and hemagglutination determinants of all human adenovirus prototypes as a basis for molecular classification and taxonomy. J Virol 79: 15265-15276.
    • (2005) J Virol , vol.79 , pp. 15265-15276
    • Madisch, I.1    Harste, G.2    Pommer, H.3    Heim, A.4
  • 26
    • 34547121715 scopus 로고    scopus 로고
    • Phylogenetic analysis and structural predictions of human adenovirus penton proteins as a basis for tissue-specific adenovirus vector design
    • Madisch I, Hofmayer S, Moritz C, Grintzalis A, Hainmueller J, Pring-Akerblom P, Heim A. 2007. Phylogenetic analysis and structural predictions of human adenovirus penton proteins as a basis for tissue-specific adenovirus vector design. J Virol 81: 8270-8281.
    • (2007) J Virol , vol.81 , pp. 8270-8281
    • Madisch, I.1    Hofmayer, S.2    Moritz, C.3    Grintzalis, A.4    Hainmueller, J.5    Pring-Akerblom, P.6    Heim, A.7
  • 27
    • 67949109467 scopus 로고    scopus 로고
    • Molecular typing of clinical adenovirus specimens by an algorithm which permits detection of adenovirus coinfections and intermediate adenovirus strains
    • McCarthy T, Lebeck MG, Capuano AW, Schnurr DP, Gray GC. 2009. Molecular typing of clinical adenovirus specimens by an algorithm which permits detection of adenovirus coinfections and intermediate adenovirus strains. J Clin Virol 46: 80-84.
    • (2009) J Clin Virol , vol.46 , pp. 80-84
    • McCarthy, T.1    Lebeck, M.G.2    Capuano, A.W.3    Schnurr, D.P.4    Gray, G.C.5
  • 28
    • 0014573011 scopus 로고
    • The structural and functional diversity of adenovirus capsid components
    • Norrby E. 1969. The structural and functional diversity of adenovirus capsid components. J Gen Virol 5: 221-236.
    • (1969) J Gen Virol , vol.5 , pp. 221-236
    • Norrby, E.1
  • 29
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page RD. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.1
  • 31
    • 69249213616 scopus 로고    scopus 로고
    • Computational analysis of human adenovirus type 22 provides evidence for recombination between human adenoviruses species D in the penton base gene
    • Robinson CM, Rajaiya J, Walsh MP, Seto D, Dyer DW, Jones MS, Chodosh J. 2009. Computational analysis of human adenovirus type 22 provides evidence for recombination between human adenoviruses species D in the penton base gene. J Virol 83: 8980-8985.
    • (2009) J Virol , vol.83 , pp. 8980-8985
    • Robinson, C.M.1    Rajaiya, J.2    Walsh, M.P.3    Seto, D.4    Dyer, D.W.5    Jones, M.S.6    Chodosh, J.7
  • 32
    • 0014139655 scopus 로고
    • Adenovirus antigens - a study of their properties and sequential development in infection
    • Russell WC, Hayashi K, Sanderson PJ, Pereira HG. 1967. Adenovirus antigens - a study of their properties and sequential development in infection. J Gen Virol 1: 495-507.
    • (1967) J Gen Virol , vol.1 , pp. 495-507
    • Russell, W.C.1    Hayashi, K.2    Sanderson, P.J.3    Pereira, H.G.4
  • 33
    • 4644319417 scopus 로고    scopus 로고
    • Comprehensive detection and serotyping of human adenoviruses by PCR and sequencing
    • Sarantis H, Johnson G, Brown M, Petric M, Tellier R. 2004. Comprehensive detection and serotyping of human adenoviruses by PCR and sequencing. J Clin Microbiol 42: 3963-3969.
    • (2004) J Clin Microbiol , vol.42 , pp. 3963-3969
    • Sarantis, H.1    Johnson, G.2    Brown, M.3    Petric, M.4    Tellier, R.5
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 35
    • 0013793174 scopus 로고
    • Antigens and structure of the adenovirus
    • Valentine RC, Pereira HG. 1965. Antigens and structure of the adenovirus. J Mol Biol 1: 13-20.
    • (1965) J Mol Biol , vol.1 , pp. 13-20
    • Valentine, R.C.1    Pereira, H.G.2
  • 38
    • 77749319410 scopus 로고    scopus 로고
    • Computational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogen
    • Walsh MP, Seto J, Jones MS, Chodosh J, Xu W, Seto D. 2010a. Computational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogen. J Clin Microbiol 48: 991-993.
    • (2010) J Clin Microbiol , vol.48 , pp. 991-993
    • Walsh, M.P.1    Seto, J.2    Jones, M.S.3    Chodosh, J.4    Xu, W.5    Seto, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.