Towards a merged satellite and in situ fluorescence ocean chlorophyll product

Biogeosciences

Volumn 9, Issue 6, 2012, Pages 2111-2125

  Lavigne, H ^a,b   D'Ortenzio, F ^a,b   Claustre, H ^a,b   Poteau, A ^a,b  

^a CNRS   (France)

^b SORBONNE UNIVERSITÉ   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOCHEMICAL CYCLE; CALIBRATION; CHLOROPHYLL; CONCENTRATION (COMPOSITION); DATA SET; DATABASE; FLUORESCENCE; IN SITU MEASUREMENT; SATELLITE DATA; SEAWATER;

EID: 84862569982     PISSN: 17264170     EISSN: 17264189     Source Type: Journal    
DOI: 10.5194/bg-9-2111-2012     Document Type: Article

References (59)

1. Althuis, I. A., Gieskes, W. W. C., Villerius, L., and Colijn, F.: In-terpretation offluorometric chlorophyll registrations with Algal pigment analysis along a ferry transect in the Southern North Sea, Neth. J. Sea Res., 33, 37-46, 1994.
2. Bailey, S. and Werdell, P.: A multi-sensor approach for the on-orbit validation of ocean color satellite data products, Remote Sens. Environ., 102, 12-23,doi:10.1016/j.rse.2006.01.015,2006. (Pubitemid 44304416)
3. Behrenfeld, M. J. and Boss, E.: Beam attenuation and chlorophyll concentration as alternative optical indices of phytoplankton biomass, J. Mar. Res., 64, 431-451, doi:10.1357/002224006778189563,2006. (Pubitemid 44404681)
4. Bosc, E., Bricaud, A., and Antoine, D.: Seasonal and inter-annual variability in algal biomass and primary production in the Mediterranean Sea, as derived from 4 years of Sea-WiFS observations, Global Biogeochem. Cy., 18, GB1005, doi:10.1029/2003GB002034,2004.
5. Boss, E., Collier, R., Larson, G., Fennel, K., and Pegau, W.: Measurements of spectral optical properties and their rela-tion to biogeochemical variables and processes in Crater Lake, Crater Lake National Park, OR, Hydrobiologia, 574, 149-159, doi:10.1007/s10750-006-2609-3,2007. (Pubitemid 44832127)
6. Boss, E., Swift, D., Taylor, L., Brickley, P., Zaneveld, R., Riser, S., Perry, M., and Strutton, P.: Observations ofpigment and particle distributions in the western North Atlantic from an autonomous float and ocean color satellite, Limnol. Oceanogr., 53, 2112-2122, doi:104319/lo.2008.53.5-partJ2. 2112,2008.
7. Boyer, T., Antonov, J., Baranova, O., Garcia, H., Johnson, D., Lo-carnini, R., Mishonov, A., O'Brien, T., Seidov, D., Smolyar, I., and Zweng, M.: World Ocean Database 2009, edited by: Levitus, S., NOAA Atlas NESDIS 66U.S. Gov. Printing Office, Wash., DC, 216 pp., DVDs, 2009.
8. de Boyer Montegut, C., Madec, G., Fischer, A., Lazar, A., and Iu-dicone, D.: Mixed layer depth over the global ocean: An exami-nation ofprofile data and a profile-based climatology, J. Geophy. Res.-Oceans, 109, C12003, doi:10.1029/2004JC002378, 2004. (Pubitemid 40335109)
9. Brasseur, P., Gruber, N., Barciela, R., Brander, K., Doron, M., El Moussaoui, A., Hobday, A., Huret, M., Kremeur, A., Lehodey, P., Matear, R., Moulin, C., Muturgudde, R., Senina, I., and Svend-sen, E.: Integrating Biogeochemistry and Ecology Into Ocean Data Assimilation Systems, Oceanography, 22,206-215, 2009.
10. Campbell, J. W.: The lognormal distribution as a model for bio-optical variability in the sea, J. Geophys. Res., 100, 13237-13254, doi:199510.1029/ 95JC00458, 1995.
11. Cetinic, I., Toro-Farmer, G., Ragan, M., Oberg, C., and Jones, B.: Calibration procedure for Slocum glider deployed optical instru-ments, Optics Express, 17, 15420-15430, 2009.
12. Claustre, H., Morel, A., Babin, M., Cailliau, C., Marie, D., Marty, J.-C., Tailliez, D. and Vaulot, D.: Variability in particle attenua-tion and chlorophyll fluorescence in the tropical Pacific: scales, patterns, and biogeochemical implications, J. Geophys. Res., 104, 3401-3422, 1999. (Pubitemid 29317141)
13. Claustre, H., Antoine, D., Boehme, L., Boss, E., D'Ortenzio, F., Fanton D'Andon, O., Guinet, C., Gruber, N., Handegard, N. O., Hood, M., Johnson, K., Lampitt, R., LeTraon, P.-Y., Lequéré, C., Lewis, M., Perry, M.-J., Platt, T., Roemmich, D., Testor, P., Sathyendranath, S., Send, U., and Yoder, J.: Guidelines To-wards an Integrated Ocean Observation System for Ecosystems and Biogeochemical Cycles, in: Proceedings of OceanObs'09: Sustained Ocean Observations and Information for Society (Vol. 2), Venice, Italy, 21-25 September 2009, edited by: Hall, J., Harrison, D. E., and Stammer, D., ESA Publication WPP-306, doi:10.5270/OceanObs09.pp.14,2010.
14. Cleveland, J. S. and Perry, M. J.: Quantum yield, relative specific absorption and fluorescence in nitrogen-limited Chaetoceros gra-cilis, Mar. Biol., 94, 489-497, 1987.
15. Conkright, M., O'Brien, T., Stephens, K., Locarnini, R., Garcia, H., Boyer, T., and Antonov, J.: World Ocean Atlas 2001, Volume 6: Chlorophyll, edited by: Levitus, S., NOAA Atlas NESDIS 54, US Governement Printing Office, Wash., DC, 46 pp., 2002.
16. Cullen, J.: The Deep Chlorophyll Maximum - Comparing Vertical Profiles of Chlorophyll-A, Can. J. Fish. Aquat Sci., 39,791-803, 1982.
17. Cullen, J. and Lewis, M.: Biological processes and optical measure-ments near the sea surface: some issues relevant to remote sens-ing, J. Geophy. Res-Oceans, 100, 13255-13266, 1995.
18. Davis, R. F., Moore, C. C., Zaneveld, J. R. V., and Napp, J. M.: Reducing the effects offouling on chlorophyll estimates derived from long-term deployments ofoptical instruments, J. Geophys. Res., 102, 5851-5855,doi:199710. 1029/96JC02430, 1997.
19. D'Ortenzio, F., Marullo, S., Ragni, M., Ribera d'Alcalà, M., and Santoleri, R.: Validation ofempirical SeaWiFS algorithms for chlorophyll-a retrieval in the Mediterranean Sea: A case study for oligotrophic seas, Remote Sens. Environ., 82, 79-94, doi:16/S0034-4257(02)00026-3,2002. (Pubitemid 38362100)
20. D'Ortenzio, F., Iudicone, D., Montegut, C., Testor, P., Antoine, D., Marullo, S., Santoleri, R., and Madec, G.: Seasonal vari-ability of the mixed layer depth in the Mediterranean Sea as derived from in situ profiles, Geophys. Res. Lett., 32, L12605, doi:10.1029/2005GL022463,2005. (Pubitemid 41398452)
21. D'Ortenzio, F., Thierry, V., Eldin, G., Claustre, H., Testor, P., Coatanoan, C., Tedetti, M., Guinet, C., Poteau, A., Prieur, L., Lefevre, D., Bourin, F., Carval, T., Goutx, M., Garçon, V., Thouron, D., Lacombe, M., Lherminier, P., Loisel, H., Mortier, L., and Antoine, D.: White Book on Oceanic Autonomous Plat-forms for Biogeochemical Studies: Instrumentation and Mea-sure (PABIM) version 1.3, available at: http://www.obs-vlfr.fr/ OAO/file/PABIM-white- book-version1.3.pdf(lastaccess: 2012), 2010.
22. Falkowski, P. and Kiefer, D. A.: Chlorophyll a fluorescence in phy-toplankton: relationship to photosynthesis and biomass, J. Plank-ton Res., 7, 715-731, 1985.
23. Feldman, G., Kuring, N., Ng, C., Esaias, W., McClain, C., El-rod, J., Maynard, N., and Endres, D.: Ocean color: Avail-ability of the global data set, Eos Trans. AGU, 70, 634, doi:10.1029/89EO00184, 1989.
24. Gieskes, W. W. and Kraay, G. W.: Unknown Chlorophyll a deriva-tives in the North Sea and the Tropical Atlantic ocean revealed by HPLC analysis, Limnol. Oceanogr., 28, 757-766, 1983.
25. Gregg, W. W. and Conkright, M.: Global seasonal climatologies of ocean chlorophyll: Blending in situ and satellite data for the Coastal Zone Color Scanner era, J. Geophy. Res.-Oceans, 106, 2499-2515,2001.
26. Gregg, W. W. and Casey, N. W.: Global and regional evaluation of the SeaWiFS chlorophyll data set, Remote Sens. Environ., 93, 463-479, doi:10.1016/j.rse.2003.12.012,2004. (Pubitemid 39444374)
27. Holm-Hansen, O., Lorenzen, C. J., Holmes, R. W., and Strickland, J. D. H.: Fluorometric Determination ofChlorophyll, Ices J. Mar. Sci., 30, 3-15, doi:10.1093/icesjms/30.1.3, 1965.
28. Hooker, S. B., Van Heukelem, L., Thomas, C. S., Claustre, H., Ras, J., Schülter, L., Clementson, L., Van der Linde, L., Eker-Develi, E., Berthon J.-F., Barlow, R., Sessions, H., Ismail, H., and Perl, J.: The third SeaWiFS HPLC Analysis Round-RobinExperiment (SeaHARRE-3), NASA technical Memorandum 2009-215849, Greenbelt: NASA Goddard Space Flight Center, 2009.
29. Karl, D. M. and Lukas, R.: The Hawaii Ocean Time-series (HOT) program: Background, rationale and field implementation, Deep-Sea Res. Pt. II, 43, 129-156, doi:16/0967-0645(96)00005-7, 1996.
30. Kiefer, D. A.: Fluorescence properties of natural phytoplankton populations, Mar. Biol., 22, 263-269, 1973.
31. Kolber, Z. and Falkowski, P. G.: Use of Active Fluorescence to Esti-mate Phytoplankton Photosynthesis in Situ, Limnol. Oceanogr., 38, 1646-1665, 1993. (Pubitemid 2043633)
32. Krom, M., Brenner, S., Kress, N., Neori, A., and Gorgon, L.: Nutri-ent Dynamics and New Production in a Warm-Core Eddy from the Eastern Mediterranean-Sea, Deep-Sea Res., 39, 467-480, 1992.
33. Loftus, M. and Seliger, H.: Some Limitation of the In Vivo Fluores-cence Technique, Chesapeake Science, 16, 79-92, 1975.
34. Lorenzen, C. J.: A method for the continuous measurement of in vivo chlorophyll concentration, Deep-Sea Res., 13, 223-227, 1966.
35. Lorenzen, C. J.: Determination ofChlorophyll and Pheo-Pigments: Spectrophotometric Equations, Limnol. Oceanogr., 12, 343-346, 1967.
36. Mantoura, R. F. C. and Llewellyn, C. A.: The rapid determi-nation of algal chlorophyll and carotenoid pigments and their breakdown products in natural waters by reverse-phase high-performance liquid chromatography, Anal. Chim. Acta, 151, 297-314, doi:10.1016/S0003-2670(00)80092-6, 1983.
37. Marty, J.-C., Chiavérini, J., Pizay, M.-D. and Avril, B.: Seasonal and interannual dynamics of nutrients and phytoplankton pig-ments in the western Mediterranean Sea at the DYFAMED time-series station (1991-1999), Deep-Sea Res. Pt. II, 49, 1965-1985, doi:16/S0967-0645(02)00022-X, 2002. (Pubitemid 34609040)
38. McClain, C. R.: A Decade of Satellite Ocean Color Observations, Annual Rev. Mar. Sci., 1, 19-42, doi:10.1146/annurev.marine.010908.163650,2009.
39. McClain, C., Cleave, M., Feldman, G., Gregg, W., Hooker, S., and Kuring, N.: Science quality SeaWiFS data for global biosphere research, Sea Technol., 39, 10-16, 1998.
40. Michaels, A. F. and Knap, A. H.: Overview of the U.S. JGOFS Bermuda Atlantic Time-series Study and the Hydrostation S program, Deep-Sea Res. Pt. II, 43, 157-198, doi:16/0967-0645(96)00004-5, 1996.
41. Mignot, A., Claustre, H., D'Ortenzio, F., Xing, X., Poteau, A., and Ras, J.: From the shape of the vertical profile of in vivo fluores-cence to Chlorophyll-a concentration, Biogeosciences, 8, 2391-2406, doi:10.5194/bg-8- 2391-2011,2011.
42. Moore, T. S., Campbell, J. W., and Dowell, M. D.: A class-based approach to characterizing and mapping the uncertainty of the MODIS ocean chlorophyll product, Remote Sens. Environ., 113, 2424-2430, doi:10.1016/j.rse.2009.07.016, 2009.
43. Morel, A.: Optical modeling of the upper ocean in relation to its biogenous matter content (case-I waters), J. Geophy. Res-Oceans,93, 10749-10768, 1988.
44. Morel, A. and Berthon, J.: Surface pigments, algal biomass profiles, and potential production of the euphotic Layer - Relationships reinvestigated in view of remote-sensing applications, Limnol. Oceanogr., 34, 1545-1562, 1989.
45. Morel, A. and Bricaud, A.: Theoretical results concerning light absorption in a discrete medium, and application to specific absorption of phytoplankton, Deep-Sea Res., 28, 1375-1393, doi:10.1016/0198-0149(81)90039-X, 1981.
46. Morel, A. and Maritorena, S.: Bio-optical properties ofoceanic wa-ters: A reappraisal, J. Geophy. Res.-Oceans, 106, 7163-7180, 2001.
47. Moutin, T. and Raimbault, P.: Primary production, carbon export and nutrients availability in western and eastern Mediterranean Sea in early summer 1996 (MINOS cruise), J. Marine Syst., 33-34,273-288, doi:10.1016/S0924-7963(02) 00062-3,2002. (Pubitemid 34616970)
48. Müller, P., Li, X.-P., and Niyogi, K. K.: Non-Photochemical Quenching. A Response to Excess Light Energy, Plant Physiol., 125, 1558-1566, doi:10.1104/pp.125.4.1558,2001. (Pubitemid 32375740)
49. Ras, J., Claustre, H., and Uitz, J.: Spatial variability ofphytoplank-ton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data, Biogeosciences, 5,353-369, doi:10.5194/bg-5-353-2008,2008. (Pubitemid 351379749)
50. Rochford, P., Kara, A., Wallcraft, A. and Arnone, R.: Importance of solar subsurface heating in ocean general circulation models, J. Geophy. Res.-Oceans, 106, 30923-30938, 2001.
51. Sackmann, B. S., Perry, M. J., and Eriksen, C. C.: Seaglider ob-servations of variability in daytime fluorescence quenching of chlorophyll-a in Northeastern Pacific coastal waters, Biogeo-sciences Discuss., 5,2839-2865, doi:10.5194/bgd-5-2839-2008, 2008.
52. Sharples, J.,Moore, C. M., Rippeth, T. P., Holligan,P. M.,Hydes,D. J., Fisher, N. R., and Simpson, J. H.: Phytoplankton Distribution and Survival in the Thermocline, Limnol. Oceanogr., 46, 486-496,2001. (Pubitemid 32434646)
53. Steinberg, D., Carlson, C., Bates, N., Johnson, R., Michaels, A. and Knap, A.: Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): a decade-scale look at ocean biology and biogeochemistry, Deep-Sea Res. Pt. II, 48, 1405-1447, 2001. (Pubitemid 32434562)
54. Strass, V.: On the calibration oflarge-scale fluorometric chlorophyll measurements from towed undulating vehicles, Deep-Sea Res., 37, 525-540, doi:10.1016/0198-0149(90)90023-O, 1990.
55. Strickland, J. D. H.: Production oforganic matter in primary stages of the marine food chain, in Chemical Oceanography, edited by: Riley, J. P. and Skirrow, G., Academic Press, London, 477-610, 1965.
56. Strickland, J. D. H.: Continuous measurement of in vivo chloro-phyll; a precautionary note, Deep-Sea Res., 15, 225-227, 1968.
57. Uitz, J., Claustre, H., Morel, A., and Hooker, S.: Vertical distribu-tion of phytoplankton communities in open ocean: An assess-mentbased onsurface chlorophyll,J. Geophy. Res.-Oceans, 111, C08005, doi:10.1029/2005JC003207,2006.
58. Xing, X., Morel, A., Claustre, H., Antoine, D., D'Ortenzio, F., Poteau, A. and Mignot, A.: Combined processing and mutual in-terpretation ofradiometry and fluorimetry from autonomous pro-filing Bio-Argo floats: Chlorophyll a retrieval, J. Geophys. Res., 116, C06020, doi:10.1029/2010JC006899,2011.
59. Xing, X., Claustre, H., Blain, S., D'Ortenzio, F., Antoine, D., Ras, J., and Guinet, C.: Quenching correction for in vivo chlorophyll fluorescence measured by instrumented elephant seals in the Ker-guelen region (Southern Ocean), Limnol. Oceanogr.-Meth., in press,2012.