-
2
-
-
0036064607
-
Tuberculosis therapy: Past, present and future
-
Iseman, M. (2002) Tuberculosis therapy: Past, present and future. Eur. Respir. J. 20, 87s-94s.
-
(2002)
Eur. Respir. J.
, vol.20
-
-
Iseman, M.1
-
4
-
-
79251589638
-
The challenge of new drug discovery for tuberculosis
-
Koul, A., Arnoult, E., Lounis, N., Guillemont, J., and Andries, K. (2011) The challenge of new drug discovery for tuberculosis. Nature 469, 483-490.
-
(2011)
Nature
, vol.469
, pp. 483-490
-
-
Koul, A.1
Arnoult, E.2
Lounis, N.3
Guillemont, J.4
Andries, K.5
-
5
-
-
77953475812
-
Global tuberculosis drug development pipeline: The need and the reality
-
Ma, Z., Lienhardt, C., Mcilleron, H., Nunn, A. J., and Wang, X. (2010) Global tuberculosis drug development pipeline: The need and the reality. Lancet 375, 2100-2109.
-
(2010)
Lancet
, vol.375
, pp. 2100-2109
-
-
Ma, Z.1
Lienhardt, C.2
Mcilleron, H.3
Nunn, A.J.4
Wang, X.5
-
7
-
-
0032765906
-
Iron acquisition and metabolism by mycobacteria
-
De Voss, J. J., Rutter, K., Schroeder, B. G., and Barry, C. E. (1999) Iron acquisition and metabolism by mycobacteria. J. Bacteriol. 181, 4443-4451. (Pubitemid 29357921)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.15
, pp. 4443-4451
-
-
De Voss, J.J.1
Rutter, K.2
Schroeder, B.G.3
Barry III, C.E.4
-
8
-
-
73249146193
-
Unusual Diheme Conformation of the Heme-Degrading Protein from Mycobacterium tuberculosis
-
Chim, N., Iniguez, A., Nguyen, T. Q., and Goulding, C. W. (2010) Unusual Diheme Conformation of the Heme-Degrading Protein from Mycobacterium tuberculosis. J. Mol. Biol. 395, 595-608.
-
(2010)
J. Mol. Biol.
, vol.395
, pp. 595-608
-
-
Chim, N.1
Iniguez, A.2
Nguyen, T.Q.3
Goulding, C.W.4
-
9
-
-
0033973479
-
The salicylate-derived mycobactin siderophores of Mycobacterium tuberculosis are essential for growth in macrophages
-
DOI 10.1073/pnas.97.3.1252
-
De Voss, J. J., Rutter, K., Schroeder, B. G., Su, H., Zhu, Y., and Barry, C. E. (2000) The salicylate-derived mycobactin siderophores of Mycobacterium tuberculosis are essential for growth in macrophages. Proc. Natl. Acad. Sci. U.S.A. 97, 1252-1257. (Pubitemid 30080845)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.3
, pp. 1252-1257
-
-
De Voss, J.J.1
Rutter, K.2
Schroeder, B.G.3
Su, H.4
Zhu, Y.5
Barry III, C.E.6
-
10
-
-
0032211974
-
Identification of a Mycobacterium tuberculosis gene cluster encoding the biosynthetic enzymes for assembly of the virulence-conferring siderophore mycobactin
-
Quadri, L. E., Sello, J., Keating, T. A., Weinreb, P. H., and Walsh, C. T. (1998) Identification of a Mycobacterium tuberculosis gene cluster encoding the biosynthetic enzymes for assembly of the virulence-conferring siderophore mycobactin. Chem. Biol. 5, 631-645. (Pubitemid 28519450)
-
(1998)
Chemistry and Biology
, vol.5
, Issue.11
, pp. 631-645
-
-
Quadri, L.E.N.1
Sello, J.2
Keating, T.A.3
Weinreb, P.H.4
Walsh, C.T.5
-
11
-
-
50149099147
-
Mechanistic analysis of Mycobacterium tuberculosis Rv1347c, a lysine Nε-acyltransferase involved in mycobactin biosynthesis
-
Frankel, B. A., and Blanchard, J. S. (2008) Mechanistic analysis of Mycobacterium tuberculosis Rv1347c, a lysine Nε-acyltransferase involved in mycobactin biosynthesis. Arch. Biochem. Biophys. 477, 259-266.
-
(2008)
Arch. Biochem. Biophys.
, vol.477
, pp. 259-266
-
-
Frankel, B.A.1
Blanchard, J.S.2
-
12
-
-
77954134675
-
Inhibition studies of Mycobacterium tuberculosis salicylate synthase (MbtI)
-
Manos-Turvey, A., Bulloch, E., Rutledge, P., Baker, E., Lott, J., and Payne, R. (2010) Inhibition studies of Mycobacterium tuberculosis salicylate synthase (MbtI). ChemMedChem 5, 1067-1079.
-
(2010)
ChemMedChem
, vol.5
, pp. 1067-1079
-
-
Manos-Turvey, A.1
Bulloch, E.2
Rutledge, P.3
Baker, E.4
Lott, J.5
Payne, R.6
-
13
-
-
78651495098
-
Inhibitors of the Salicylate Synthase (MbtI) from Mycobacterium tuberculosis Discovered by High-Throughput Screening
-
Vasan, M., Neres, J., Williams, J., Wilson, D. J., Teitelbaum, A. M., Remmel, R. P., and Aldrich, C. C. (2010) Inhibitors of the Salicylate Synthase (MbtI) from Mycobacterium tuberculosis Discovered by High-Throughput Screening. ChemMedChem 5, 2079-2087.
-
(2010)
ChemMedChem
, vol.5
, pp. 2079-2087
-
-
Vasan, M.1
Neres, J.2
Williams, J.3
Wilson, D.J.4
Teitelbaum, A.M.5
Remmel, R.P.6
Aldrich, C.C.7
-
14
-
-
56749092183
-
Quantitative Three Dimensional Structure Linear Interaction Energy Model of 5′-O-[N-(Salicyl)sulfamoyl]adenosine and the Aryl Acid Adenylating Enzyme MbtA
-
Labello, N. P., Bennett, E. M., Ferguson, D. M., and Aldrich, C. C. (2008) Quantitative Three Dimensional Structure Linear Interaction Energy Model of 5′-O-[N-(Salicyl)sulfamoyl]adenosine and the Aryl Acid Adenylating Enzyme MbtA. J. Med. Chem. 51, 7154-7160.
-
(2008)
J. Med. Chem.
, vol.51
, pp. 7154-7160
-
-
Labello, N.P.1
Bennett, E.M.2
Ferguson, D.M.3
Aldrich, C.C.4
-
15
-
-
51849155973
-
Inhibition of siderophore biosynthesis in Mycobacterium tuberculosis with nucleoside bisubstrate analogues: Structure-activity relationships of the nucleobase domain of 5′-O-[N-(salicyl)sulfamoyl]-adenosine
-
Neres, J., Labello, N. P., Somu, R. V., Boshoff, H. I., Wilson, D. J., Vannada, J., Chen, L., Barry, C. E., Bennett, E. M., and Aldrich, C. C. (2008) Inhibition of siderophore biosynthesis in Mycobacterium tuberculosis with nucleoside bisubstrate analogues: Structure-activity relationships of the nucleobase domain of 5′-O-[N-(salicyl)sulfamoyl]-adenosine. J. Med. Chem. 51, 5349-5370.
-
(2008)
J. Med. Chem.
, vol.51
, pp. 5349-5370
-
-
Neres, J.1
Labello, N.P.2
Somu, R.V.3
Boshoff, H.I.4
Wilson, D.J.5
Vannada, J.6
Chen, L.7
Barry, C.E.8
Bennett, E.M.9
Aldrich, C.C.10
-
16
-
-
55849088001
-
Aryl acid adenylating enzymes involved in siderophore biosynthesis: Fluorescence polarization assay, ligand specificity, and discovery of non-nucleoside inhibitors via high-throughput screening
-
Neres, J., Wilson, D. J., Celia, L., Beck, B. J., and Aldrich, C. C. (2008) Aryl acid adenylating enzymes involved in siderophore biosynthesis: Fluorescence polarization assay, ligand specificity, and discovery of non-nucleoside inhibitors via high-throughput screening. Biochemistry 47, 11735-11749.
-
(2008)
Biochemistry
, vol.47
, pp. 11735-11749
-
-
Neres, J.1
Wilson, D.J.2
Celia, L.3
Beck, B.J.4
Aldrich, C.C.5
-
17
-
-
37849036789
-
5′-O-[(NAcyl) sulfamoyl]adenosines as antitubercular agents that inhibit MbtA: An adenylation enzyme required for siderophore biosynthesis of the mycobactins
-
Qiao, C., Gupte, A., Boshoff, H. I., Wilson, D. J., Bennett, E. M., Somu, R. V., Barry, C. E., and Aldrich, C. C. (2007) 5′-O-[(NAcyl) sulfamoyl]adenosines as antitubercular agents that inhibit MbtA: An adenylation enzyme required for siderophore biosynthesis of the mycobactins. J. Med. Chem. 50, 6080-6094.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 6080-6094
-
-
Qiao, C.1
Gupte, A.2
Boshoff, H.I.3
Wilson, D.J.4
Bennett, E.M.5
Somu, R.V.6
Barry, C.E.7
Aldrich, C.C.8
-
18
-
-
33845930593
-
Antitubercular nucleosides that inhibit siderophore biosynthesis: SAR of the glycosyl domain
-
DOI 10.1021/jm061068d
-
Somu, R. V., Wilson, D. J., Bennett, E. M., Boshoff, H. I., Celia, L., Beck, B. J., Barry, C. E., and Aldrich, C. C. (2006) Antitubercular nucleosides that inhibit siderophore biosynthesis: SAR of the glycosyl domain. J. Med. Chem. 49, 7623-7635. (Pubitemid 46033655)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.26
, pp. 7623-7635
-
-
Somu, R.V.1
Wilson, D.J.2
Bennett, E.M.3
Boshoff, H.I.4
Celia, L.5
Beck, B.J.6
Barry III, C.E.7
Aldrich, C.C.8
-
19
-
-
33750378701
-
Design, synthesis, and biological evaluation of β-ketosulfonamide adenylation inhibitors as potential antitubercular agents
-
DOI 10.1021/ol0617289
-
Vannada, J., Bennett, E. M., Wilson, D. J., Boshoff, H. I., Barry, C. E., and Aldrich, C. C. (2006) Design, synthesis, and biological evaluation of β-ketosulfonamide adenylation inhibitors as potential antitubercular agents. Org. Lett. 8, 4707-4710. (Pubitemid 44629441)
-
(2006)
Organic Letters
, vol.8
, Issue.21
, pp. 4707-4710
-
-
Vannada, J.1
Bennett, E.M.2
Wilson, D.J.3
Boshoff, H.I.4
Barry III, C.E.5
Aldrich, C.C.6
-
20
-
-
30444445995
-
Rationally-designed nucleoside antibiotics that inhibit siderophore biosynthesis of Mycobacterium tuberculosis
-
DOI 10.1021/jm051060o
-
Somu, R. V., Boshoff, H., Qiao, C., Bennett, E. M., Barry Iii, C. E., and Aldrich, C. C. (2006) Rationally-designed nucleoside antibiotics that inhibit siderophore biosynthesis of Mycobacterium tuberculosis. J. Med. Chem. 49, 31-34. (Pubitemid 43077318)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.1
, pp. 31-34
-
-
Somu, R.V.1
Boshoff, H.2
Qiao, C.3
Bennett, E.M.4
Barry III, C.E.5
Aldrich, C.C.6
-
21
-
-
33749033361
-
The structure of MbtI from Mycobacterium tuberculosis, the first enzyme in the biosynthesis of the siderophore mycobactin, reveals it to be a salicylate synthase
-
DOI 10.1128/JB.00338-06
-
Harrison, A. J., Yu, M., Gårdenborg, T., Middleditch, M., Ramsay, R. J., Baker, E. N., and Lott, J. S. (2006) The structure of MbtI from Mycobacterium tuberculosis, the first enzyme in the biosynthesis of the siderophore mycobactin, reveals it to be a salicylate synthase. J. Bacteriol. 188, 6081-6091. (Pubitemid 44448550)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.17
, pp. 6081-6091
-
-
Harrison, A.J.1
Yu, M.2
Gardenborg, T.3
Middleditch, M.4
Ramsay, R.J.5
Baker, E.N.6
Lott, J.S.7
-
22
-
-
1542306930
-
Conservation of Mechanism in Three Chorismate-Utilizing Enzymes
-
DOI 10.1021/ja0389927
-
He, Z., Stigers Lavoie, K. D., Bartlett, P. A., and Toney, M. D. (2004) Conservation of mechanism in three chorismate-utilizing enzymes. J. Am. Chem. Soc. 126, 2378-2385. (Pubitemid 38295719)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.8
, pp. 2378-2385
-
-
He, Z.1
Stigers, L.K.D.2
Bartlett, P.A.3
Toney, M.D.4
-
23
-
-
0034951945
-
A metabolic node in action: Chorismate-utilizing enzymes in microorganisms
-
Dosselaere, F., and Vanderleyden, J. (2001) A metabolic node in action: Chorismate-utilizing enzymes in microorganisms. Crit. Rev. Microbiol. 27, 75-131. (Pubitemid 32592377)
-
(2001)
Critical Reviews in Microbiology
, vol.27
, Issue.2
, pp. 75-131
-
-
Dosselaere, F.1
Vanderleyden, J.2
-
24
-
-
0035933197
-
The structures of anthranilate synthase of Serratia marcescens crystallized in the presence of (i) its substrates, chorismate and glutamine, and a product glutamate, and (ii) its endproduct inhibitor, L-tryptophan
-
Spraggon, G., Kim, C., Nguyen-Huu, X., Yee, M. C., Yanofsky, C., and Mills, S. E. (2001) The structures of anthranilate synthase of Serratia marcescens crystallized in the presence of (i) its substrates, chorismate and glutamine, and a product glutamate, and (ii) its endproduct inhibitor, L-tryptophan. Proc. Natl. Acad. Sci. U.S.A. 98, 6021-6026.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 6021-6026
-
-
Spraggon, G.1
Kim, C.2
Nguyen-Huu, X.3
Yee, M.C.4
Yanofsky, C.5
Mills, S.E.6
-
25
-
-
0035123059
-
Structure of the cooperative allosteric anthranilate synthase from Salmonella typhimurium
-
DOI 10.1038/84988
-
Morollo, A. A., and Eck, M. J. (2001) Structure of the cooperative allosteric anthranilate synthase from Salmonella typhimurium. Nat. Struct. Mol. Biol. 8, 243-247. (Pubitemid 32180051)
-
(2001)
Nature Structural Biology
, vol.8
, Issue.3
, pp. 243-247
-
-
Morollo, A.A.1
Eck, M.J.2
-
26
-
-
0037133196
-
Structure of Escherichia coli aminodeoxychorismate synthase: Architectural conservation and diversity in chorismate-utilizing enzymes
-
DOI 10.1021/bi015791b
-
Parsons, J., Jensen, P., Pachikara, A., Howard, A., Eisenstein, E., and Ladner, J. (2002) Structure of Escherichia coli aminodeoxychorismate synthase: Architectural conservation and diversity in chorismate-utilizing enzymes. Biochemistry 41, 2198-2208. (Pubitemid 34160880)
-
(2002)
Biochemistry
, vol.41
, Issue.7
, pp. 2198-2208
-
-
Parsons, J.F.1
Jensen, P.Y.2
Pachikara, A.S.3
Howard, A.J.4
Eisenstein, E.5
Ladner, J.E.6
-
27
-
-
33846644927
-
Lysine 190 is the catalytic base in MenF, the menaquinone-specific isochorismate synthase from Escherichia coli: Implications for an enzyme family
-
DOI 10.1021/bi0608515
-
Kolappan, S., Zwahlen, J., Zhou, R., Truglio, J., Tonge, P., and Kisker, C. (2007) Lysine 190 is the catalytic base in MenF, the menaquinone-specific isochorismate synthase from Escherichia coli: Implications for an enzyme family. Biochemistry 46, 946-953. (Pubitemid 46184983)
-
(2007)
Biochemistry
, vol.46
, Issue.4
, pp. 946-953
-
-
Kolappan, S.1
Zwahlen, J.2
Zhou, R.3
Truglio, J.J.4
Tonge, P.J.5
Kisker, C.6
-
28
-
-
77249104442
-
Crystal structure of Escherichia coli enterobactin-specific isochorismate synthase (EntC) bound to its reaction product isochorismate: Implications for the enzyme mechanism and differential activity of chorismate-utilizing enzymes
-
Sridharan, S., Howard, N., Kerbarh, O., Błaszczyk, M., Abell, C., and Blundell, T. L. (2010) Crystal structure of Escherichia coli enterobactin-specific isochorismate synthase (EntC) bound to its reaction product isochorismate: Implications for the enzyme mechanism and differential activity of chorismate-utilizing enzymes. J. Mol. Biol. 397, 290-300.
-
(2010)
J. Mol. Biol.
, vol.397
, pp. 290-300
-
-
Sridharan, S.1
Howard, N.2
Kerbarh, O.3
Błaszczyk, M.4
Abell, C.5
Blundell, T.L.6
-
29
-
-
33344476803
-
Crystal structures of Yersinia enterocolitica salicylate synthase and its complex with the reaction products salicylate and pyruvate
-
DOI 10.1016/j.jmb.2005.12.078, PII S002228360501661X
-
Kerbarh, O., Chirgadze, D. Y., Blundell, T. L., and Abell, C. (2006) Crystal structures of Yersinia enterocolitica salicylate synthase and its complex with the reaction products salicylate and pyruvate. J. Mol. Biol. 357, 524-534. (Pubitemid 43290752)
-
(2006)
Journal of Molecular Biology
, vol.357
, Issue.2
, pp. 524-534
-
-
Kerbarh, O.1
Chirgadze, D.Y.2
Blundell, T.L.3
Abell, C.4
-
30
-
-
33846646987
-
Structure and mechanism of MbtI, the salicylate synthase from Mycobacterium tuberculosis
-
DOI 10.1021/bi060852x
-
Zwahlen, J., Kolappan, S., Zhou, R., Kisker, C., and Tonge, P. (2007) Structure and mechanism of MbtI, the salicylate synthase from Mycobacterium tuberculosis. Biochemistry 46, 954-964. (Pubitemid 46184984)
-
(2007)
Biochemistry
, vol.46
, Issue.4
, pp. 954-964
-
-
Zwahlen, J.1
Kolappan, S.2
Zhou, R.3
Kisker, C.4
Tonge, P.J.5
-
31
-
-
0023666970
-
Chorismate Aminations: Partial-Purification of Escherichia coli PABA Synthase and Mechanistic Comparison with Anthranilate Synthase
-
Walsh, C. T., Erion, M. D., Walts, A. E., Delany, J. J., and Berchtold, G. A. (1987) Chorismate Aminations: Partial-Purification of Escherichia coli PABA Synthase and Mechanistic Comparison with Anthranilate Synthase. Biochemistry 26, 4734-4745.
-
(1987)
Biochemistry
, vol.26
, pp. 4734-4745
-
-
Walsh, C.T.1
Erion, M.D.2
Walts, A.E.3
Delany, J.J.4
Berchtold, G.A.5
-
32
-
-
0028931375
-
Chorismate-utilizing enzymes isochorismate synthase, anthranilate synthase, and p-aminobenzoate synthase: Mechanistic insight through inhibitor design
-
Kozlowski, M., Tom, N., Seto, C., Sefler, A., and Bartlett, P. (1995) Chorismate-utilizing enzymes isochorismate synthase, anthranilate synthase, and p-aminobenzoate synthase: Mechanistic insight through inhibitor design. J. Am. Chem. Soc. 117, 2128-2140.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 2128-2140
-
-
Kozlowski, M.1
Tom, N.2
Seto, C.3
Sefler, A.4
Bartlett, P.5
-
33
-
-
27744564578
-
Design and synthesis of aromatic inhibitors of anthranilate synthase
-
DOI 10.1039/b510633h
-
Payne, R. J., Bulloch, E. M. M., Abell, A. D., and Abell, C. (2005) Design and synthesis of aromatic inhibitors of anthranilate synthase. Org. Biomol. Chem. 3, 3629-3635. (Pubitemid 41603761)
-
(2005)
Organic and Biomolecular Chemistry
, vol.3
, Issue.20
, pp. 3629-3635
-
-
Payne, R.J.1
Bulloch, E.M.M.2
Abell, A.D.3
Abell, C.4
-
34
-
-
19944362255
-
Inhibition studies on salicylate synthase
-
DOI 10.1039/b503800f
-
Payne, R. J., Kerbarh, O., Miguel, R. N., Abell, A. D., and Abell, C. (2005) Inhibition studies on salicylate synthase. Org. Biomol. Chem. 3, 1825-1827. (Pubitemid 40751350)
-
(2005)
Organic and Biomolecular Chemistry
, vol.3
, Issue.10
, pp. 1825-1827
-
-
Payne, R.J.1
Kerbarh, O.2
Miguel, R.N.3
Abell, A.D.4
Abell, C.5
-
35
-
-
65949086823
-
Synthesis and evaluation of 2,5-dihydrochorismate analogues as inhibitors of the chorismate-utilising enzymes
-
Payne, R. J., Bulloch, E. M. M., Toscano, M. M., Jones, M. A., Kerbarh, O., and Abell, C. (2009) Synthesis and evaluation of 2,5-dihydrochorismate analogues as inhibitors of the chorismate-utilising enzymes. Org. Biomol. Chem. 7, 2421-2429.
-
(2009)
Org. Biomol. Chem.
, vol.7
, pp. 2421-2429
-
-
Payne, R.J.1
Bulloch, E.M.M.2
Toscano, M.M.3
Jones, M.A.4
Kerbarh, O.5
Abell, C.6
-
36
-
-
77954654131
-
Inhibition of chorismate-utilising enzymes by 2-amino-4-carboxypyridine and 4-carboxypyridone and 5-carboxypyridone analogues
-
Payne, R. J., Bulloch, E. M. M., Kerbarh, O., and Abell, C. (2010) Inhibition of chorismate-utilising enzymes by 2-amino-4-carboxypyridine and 4-carboxypyridone and 5-carboxypyridone analogues. Org. Biomol. Chem. 8, 3534-3542.
-
(2010)
Org. Biomol. Chem.
, vol.8
, pp. 3534-3542
-
-
Payne, R.J.1
Bulloch, E.M.M.2
Kerbarh, O.3
Abell, C.4
-
37
-
-
27744564578
-
Design and synthesis of aromatic inhibitors of anthranilate synthase
-
Payne, R. J., Toscano, M. D., Bulloch, E. M. M., Abell, A. D., and Abell, C. (2005) Design and synthesis of aromatic inhibitors of anthranilate synthase. Org. Biomol. Chem. 3, 2271.
-
(2005)
Org. Biomol. Chem.
, vol.3
, pp. 2271
-
-
Payne, R.J.1
Toscano, M.D.2
Bulloch, E.M.M.3
Abell, A.D.4
Abell, C.5
-
38
-
-
77952044139
-
Targeting multiple chorismate-utilizing enzymes with a single inhibitor: Validation of a three-stage design
-
Ziebart, K. T., Dixon, S. M., Avila, B., El-Badri, M. H., Guggenheim, K. G., Kurth, M. J., and Toney, M. D. (2010) Targeting multiple chorismate-utilizing enzymes with a single inhibitor: Validation of a three-stage design. J. Med. Chem. 53, 3718-3729.
-
(2010)
J. Med. Chem.
, vol.53
, pp. 3718-3729
-
-
Ziebart, K.T.1
Dixon, S.M.2
Avila, B.3
El-Badri, M.H.4
Guggenheim, K.G.5
Kurth, M.J.6
Toney, M.D.7
-
39
-
-
79955980721
-
Ligand binding induces an ammonia channel in 2-amino-2- desoxyisochorismate (ADIC) synthase PhzE
-
Li, Q. A., Mavrodi, D. V., Thomashow, L. S., Roessle, M., and Blankenfeldt, W. (2011) Ligand binding induces an ammonia channel in 2-amino-2-desoxyisochorismate (ADIC) synthase PhzE. J. Biol. Chem. 286, 18213-18221.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 18213-18221
-
-
Li, Q.A.1
Mavrodi, D.V.2
Thomashow, L.S.3
Roessle, M.4
Blankenfeldt, W.5
-
40
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
42
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D., Ballard, C. C., Cowtan, K. D., Dodson, E. J., Emsley, P., Evans, P. R., Keegan, R. M., Krissinel, E. B., Leslie, A. G. W., McCoy, A., McNicholas, S. J., Murshudov, G. N., Pannu, N. S., Potterton, E. A., Powell, H. R., Read, R. J., Vagin, A., and Wilson, K. S. (2011) Overview of the CCP4 suite and current developments. Acta Crystallogr. D67, 235-242.
-
(2011)
Acta Crystallogr.
, vol.D67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.W.9
McCoy, A.10
McNicholas, S.J.11
Murshudov, G.N.12
Pannu, N.S.13
Potterton, E.A.14
Powell, H.R.15
Read, R.J.16
Vagin, A.17
Wilson, K.S.18
-
43
-
-
74549194551
-
Molecular replacement with MOLREP
-
Vagin, A., and Teplyakov, A. (2010) Molecular replacement with MOLREP. Acta Crystallogr. D66, 22-25.
-
(2010)
Acta Crystallogr.
, vol.D66
, pp. 22-25
-
-
Vagin, A.1
Teplyakov, A.2
-
44
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D66, 486-501.
-
(2010)
Acta Crystallogr.
, vol.D66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
45
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
DOI 10.1107/S0907444996012255
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D53, 240-255. (Pubitemid 27235885)
-
(1997)
Acta Crystallographica Section D: Biological Crystallography
, vol.53
, Issue.3
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
46
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov, G. N., Skubak, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F., and Vagin, A. A. (2011) REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr. D67, 355-367.
-
(2011)
Acta Crystallogr.
, vol.D67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
47
-
-
84858642798
-
-
version 2.8.0, Global Phasing Ltd., Cambridge, U.K.
-
Bricogne, G., Blanc, E., Brandl, M., Flensburg, C., Keller, P., Paciorek, W., Roversi, P., Sharff, A., Smart, O. S., Vonrhein, C., and Womack, T. O. (2011) BUSTER, version 2.8.0, Global Phasing Ltd., Cambridge, U.K.
-
(2011)
BUSTER
-
-
Bricogne, G.1
Blanc, E.2
Brandl, M.3
Flensburg, C.4
Keller, P.5
Paciorek, W.6
Roversi, P.7
Sharff, A.8
Smart, O.S.9
Vonrhein, C.10
Womack, T.O.11
-
49
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: All-atom structure validation for macromolecular crystallography. Acta Crystallogr. D66, 12-21.
-
(2010)
Acta Crystallogr.
, vol.D66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
50
-
-
79955574923
-
-
version 1.5 Schrödinger, LLC, New York
-
The PyMOL Molecular Graphics System, version 1.5 (2010) Schrödinger, LLC, New York.
-
(2010)
The PyMOL Molecular Graphics System
-
-
-
51
-
-
84893482610
-
Solution for Best Rotation to Relate 2 Sets of Vectors
-
Kabsch, W. (1976) Solution for Best Rotation to Relate 2 Sets of Vectors. Acta Crystallogr. A32, 922-923.
-
(1976)
Acta Crystallogr.
, vol.A32
, pp. 922-923
-
-
Kabsch, W.1
-
52
-
-
37249005205
-
The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability
-
DOI 10.1038/nprot.2007.321, PII NPROT.2007.321
-
Niesen, F. H., Berglund, H., and Vedadi, M. (2007) The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability. Nat. Protoc. 2, 2212-2221. (Pubitemid 351565860)
-
(2007)
Nature Protocols
, vol.2
, Issue.9
, pp. 2212-2221
-
-
Niesen, F.H.1
Berglund, H.2
Vedadi, M.3
-
53
-
-
84855696985
-
-
Gaussian, Wallingford, CT
-
Frisch, M. J., et al. (2009) Guassian 09, Gaussian, Wallingford, CT.
-
(2009)
Guassian 09
-
-
Frisch, M.J.1
-
54
-
-
33751157732
-
Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields
-
Stephens, P. J., Devlin, F. J., Chabalowski, C. F., and Frisch, M. J. (1994) Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields. J. Phys. Chem. 98, 11623-11627.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 11623-11627
-
-
Stephens, P.J.1
Devlin, F.J.2
Chabalowski, C.F.3
Frisch, M.J.4
-
55
-
-
0000189651
-
Density-Functional Thermochemistry. 3. The Role of Exact Exchange
-
Becke, A. D. (1993) Density-Functional Thermochemistry. 3. The Role of Exact Exchange. J. Chem. Phys. 98, 5648-5652.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
56
-
-
84555197171
-
Accurate prediction of experimental free energy of activation barriers for the aliphatic-Claisen rearrangement through DFT calculations
-
Ramadhar, T. R., and Batey, R. A. (2011) Accurate prediction of experimental free energy of activation barriers for the aliphatic-Claisen rearrangement through DFT calculations. Comput. Theor. Chem. 976, 167-182.
-
(2011)
Comput. Theor. Chem.
, vol.976
, pp. 167-182
-
-
Ramadhar, T.R.1
Batey, R.A.2
-
57
-
-
0031209054
-
A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to Isotropic and anisotropic dielectrics
-
Cances, E., Mennucci, B., and Tomasi, J. (1997) A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to isotropic and anisotropic dielectrics. J. Chem. Phys. 107, 3032-3041. (Pubitemid 127568923)
-
(1997)
Journal of Chemical Physics
, vol.107
, Issue.8
, pp. 3032-3041
-
-
Cances, E.1
Mennucci, B.2
Tomasi, J.3
-
58
-
-
84355166690
-
Purposely engineered drug-target mismatches for entropy-based drug optimization
-
Fernandez, A., Fraser, C., and Scott, L. R. (2012) Purposely engineered drug-target mismatches for entropy-based drug optimization. Trends Biotechnol. 30, 1-7.
-
(2012)
Trends Biotechnol.
, vol.30
, pp. 1-7
-
-
Fernandez, A.1
Fraser, C.2
Scott, L.R.3
-
59
-
-
34447503697
-
Conformational entropy in molecular recognition by proteins
-
DOI 10.1038/nature05959, PII NATURE05959
-
Frederick, K. K., Marlow, M. S., Valentine, K. G., and Wand, A. J. (2007) Conformational entropy in molecular recognition by proteins. Nature 448, 325-329. (Pubitemid 47080342)
-
(2007)
Nature
, vol.448
, Issue.7151
, pp. 325-329
-
-
Frederick, K.K.1
Marlow, M.S.2
Valentine, K.G.3
Wand, A.J.4
-
60
-
-
0037666888
-
Implications of protein flexibility for drug discovery
-
Teague, S. J. (2003) Implications of protein flexibility for drug discovery. Nat. Rev. Drug Discovery 2, 527-541.
-
(2003)
Nat. Rev. Drug Discovery
, vol.2
, pp. 527-541
-
-
Teague, S.J.1
-
61
-
-
52049123291
-
Do enthalpy and entropy distinguish first in class from best in class?
-
Freire, E. (2008) Do enthalpy and entropy distinguish first in class from best in class? Drug Discovery Today 13, 869-874.
-
(2008)
Drug Discovery Today
, vol.13
, pp. 869-874
-
-
Freire, E.1
-
62
-
-
0030915704
-
Improved R-factors for diffraction data analysis in macromolecular crystallography
-
DOI 10.1038/nsb0497-269
-
Diederichs, K., and Karplus, P. (1997) Improved R-factors for diffraction data analysis in macromolecular crystallography. Nat. Struct. Biol. 4, 269-275. (Pubitemid 27157198)
-
(1997)
Nature Structural Biology
, vol.4
, Issue.4
, pp. 269-275
-
-
Diederichs, K.1
Karplus, P.A.2
|