Ligand binding induces an ammonia channel in 2-amino-2-desoxyisochorismate (ADIC) synthase PhzE

Journal of Biological Chemistry

Volumn 286, Issue 20, 2011, Pages 18213-18221

  Li, Qi Ang ^a   Mavrodi, Dmitri V ^b   Thomashow, Linda S ^b,c   Roessle, Manfred ^d   Blankenfeldt, Wulf ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PHYSIOLOGY   (Germany)

^b WASHINGTON STATE UNIVERSITY   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

^d DESY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

1-GLUTAMINE; ACTIVE CENTER; ALLOSTERIC INHIBITION; ANTHRANILATE; BURKHOLDERIA; CHORISMATE; CLOSED FORM; ELECTRON DENSITIES; FUNCTIONAL UNITS; INACTIVE MUTANTS; LIGAND BINDING; LIGAND-FREE; MASS SPECTROMETRIC ANALYSIS; ONE CHAIN; PYRUVATES; QUATERNARY STRUCTURE; SIDEROPHORES; SMALL ANGLE X-RAY SCATTERING; STRUCTURAL REARRANGEMENT; SYNTHASES; TRANSPORT CHANNEL; TRYPTOPHAN RESIDUES;

AMINO ACIDS; AMMONIA; BIOCHEMISTRY; BIOSYNTHESIS; CRYSTAL STRUCTURE; DIMERS; MANGANESE; MANGANESE COMPOUNDS; ZINC;

LIGANDS;

2 AMINO 2 DESOXYISOCHORISMATE SYNTHASE; AMMONIA; BACTERIAL PROTEIN; PROTEIN PHZE; UNCLASSIFIED DRUG;

ARTICLE; BURKHOLDERIA; BURKHOLDERIA LATA; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLIZATION; GENE OVEREXPRESSION; ISOTHERMAL TITRATION CALORIMETRY; LIGAND BINDING; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN PURIFICATION; PROTEIN QUATERNARY STRUCTURE; PROTEIN SYNTHESIS; RADIATION SCATTERING;

AMMONIA; BACTERIAL PROTEINS; BURKHOLDERIA; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; LIGANDS; METALS, HEAVY; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; TRANSAMINASES;

BURKHOLDERIA;

EID: 79955980721     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.183418     Document Type: Article

References (38)

1. Dosselaere, F., and Vanderleyden, J. (2001) Crit. Rev. Microbiol. 27, 75-131
2. Spraggon, G., Kim, C., Nguyen-Huu, X., Yee, M. C., Yanofsky, C., and Mills, S. E. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 6021-6026
3. Kerbarh, O., Chirgadze, D. Y., Blundell, T. L., and Abell, C. (2006) J. Mol. Biol. 357, 524-534
4. Raushel, F. M., Thoden, J. B., and Holden, H. M. (2003) Acc. Chem. Res. 36, 539-548
5. Huang, X., Holden, H. M., and Raushel, F. M. (2001) Annu. Rev. Biochem. 70, 149-180
6. Mavrodi, D. V., Blankenfeldt, W., and Thomashow, L. S. (2006) Annu. Rev. Phytopathol. 44, 417-445
7. Mentel, M., Ahuja, E. G., Mavrodi, D. V., Breinbauer, R., Thomashow, L. S., and Blankenfeldt, W. (2009) Chembiochem 10, 2295-2304
8. Doublié, S. (1997) Methods Enzymol. 276, 523-530
9. Kabsch, W. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 125-132
10. Schneider, T. R., and Sheldrick, G. M. (2002) Acta Crystallogr. D Biol. Crystallogr. 58, 1772-1779
11. de la Fortelle, E., and Bricogne, G. (1997) Methods Enzymol. 276, 472-494
12. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. A 47, 110-119
13. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
14. Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
15. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) J. Appl. Crystallogr. 40, 658-674
16. Schüttelkopf, A. W., and van Aalten, D. M. F. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 1355-1363
17. Parsons, J. F., Calabrese, K., Eisenstein, E., and Ladner, J. E. (2003) Biochemistry 42, 5684-5693
18. Roessle, M., Klaering, R., Ristau, U., Robrahn, B., Jahn, D., Gehrmann, T., Konarev, P., Round, A., Fiedler, S., Hermes, C., and Svergun, D. (2007) J. Appl. Crystallogr. 40, S190-194
19. Konarev, P., Volkov, V., Sokolova, A., Koch, M., and Svergun, D. (2003) J. Appl. Crystallogr. 36, 1277-1282
20. Svergun, D. I. (1993) J. Appl. Crystallogr. 26, 258-267
21. Svergun, D. I. (1999) Biophys. J 76, 2879-2886
22. Morollo, A. A., and Bauerle, R. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 9983-9987
23. Morollo, A. A., Finn, M. G., and Bauerle, R. (1993) J. Am. Chem. Soc. 115, 816-817
24. Roemer, A., and Herbert, R. (1982) Z. Naturforsch. C Biosci. 37C, 1070-1074
25. McDonald, M., Mavrodi, D. V., Thomashow, L. S., and Floss, H. G. (2001) J. Am. Chem. Soc. 123, 9459-9460
26. Pierson, L. S., 3rd, Gaffney, T., Lam, S., and Gong, F. (1995) FEMS Microbiol. Lett. 134, 299-307
27. Van Lanen, S. G., Lin, S., and Shen, B. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 494-499
28. Sridharan, S., Howard, N., Kerbarh, O., Blaszczyk, M., Abell, C., and Blundell, T. L. (2010) J. Mol. Biol. 397, 290-300
29. Parsons, J. F., Shi, K. M., and Ladner, J. E. (2008) Acta Crystallogr. D Biol. Crystallogr. 64, 607-610
30. Petrek, M., Otyepka, M., Banás, P., Kosinová, P., Koca, J., and Damborský, J. (2006) BMC Bioinformatics 7, 316
31. Teplyakov, A., Obmolova, G., Badet, B., and Badet-Denisot, M. A. (2001) J. Mol. Biol. 313, 1093-1102
32. DeClue, M. S., Baldridge, K. K., Künzler, D. E., Kast, P., and Hilvert, D. (2005) J. Am. Chem. Soc. 127, 15002-15003
33. Zwahlen, J., Kolappan, S., Zhou, R., Kisker, C., and Tonge, P. J. (2007) Biochemistry 46, 954-964
34. Ashenafi, M., Carrington, R., Collins, A. C., and Byrnes, W. M. (2008) Ethn. Dis. 18, S2-9-13
35. Kolappan, S., Zwahlen, J., Zhou, R., Truglio, J. J., Tonge, P. J., and Kisker, C. (2007) Biochemistry 46, 946-953
36. Outten, C. E., and O'Halloran, T. V. (2001) Science 292, 2488-2492
37. Wriggers, W. (2010) Biophys. Rev. 2, 21-27
38. Baker, N. A., Sept, D., Joseph, S., Holst, M. J., and McCammon, J. A. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 10037-10041