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Volumn 10, Issue 3, 2012, Pages

Exploiting symmetry properties of the discretizable molecular distance geometry problem

Author keywords

branch and prune; discretization; distance geometry; NMR; Protein conformation; symmetry

Indexed keywords

PROTEIN;

EID: 84862505760     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720012420097     Document Type: Conference Paper
Times cited : (31)

References (25)
  • 5
    • 55549138762 scopus 로고    scopus 로고
    • A distributed SDP approach for large-scale noisy anchor-free graph realization with applications to molecular conformation
    • Biswas P, Toh K-C, Ye Y, A distributed SDP approach for large-scale noisy anchor-free graph realization with applications to molecular conformation, SIAM J Sci Comput 30:1251-1277, 2008.
    • (2008) SIAM J. Sci. Comput. , vol.30 , pp. 1251-1277
    • Biswas, P.1    Toh, K.-C.2    Ye, Y.3
  • 7
    • 0000935435 scopus 로고    scopus 로고
    • Distance geometry optimization for protein structures
    • Mor-e JJ, Wu Z, Distance geometry optimization for protein structures, J Global Optim 15:219-234, 1999.
    • (1999) J. Global. Optim. , vol.15 , pp. 219-234
    • More, J.J.1    Wu, Z.2
  • 8
    • 33847251002 scopus 로고    scopus 로고
    • An updated geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data
    • Wu D, Wu Z, An updated geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data, J Global Optimization 37:661-673, 2007.
    • (2007) J. Global Optimization , vol.37 , pp. 661-673
    • Wu, D.1    Wu, Z.2
  • 9
    • 72749085157 scopus 로고    scopus 로고
    • Molecular distance geometry problem
    • in Floudas C, Pardalos P (eds 2nd edn. Springer, New York
    • Lavor C, Liberti L, Maculan N, Molecular distance geometry problem, in Floudas C, Pardalos P (eds), Encyclopedia of Optimization 2nd edn., Springer, New York, 2009, pp. 2305-2311.
    • (2009) Encyclopedia of Optimization , pp. 2305-2311
    • Lavor, C.1    Liberti, L.2    Maculan, N.3
  • 10
    • 84857919606 scopus 로고    scopus 로고
    • Recent advances on the discretizable molecular distance geometry problem
    • Lavor C, Liberti L, Maculan N, Mucherino A, Recent advances on the discretizable molecular distance geometry problem, Eur J Oper Res 219:698-706, 2012.
    • (2012) Eur. J. Oper. Res. , vol.219 , pp. 698-706
    • Lavor, C.1    Liberti, L.2    Maculan, N.3    Mucherino, A.4
  • 12
    • 68949155001 scopus 로고    scopus 로고
    • A branch-And-prune algorithm for the molecular distance geometry problem
    • Liberti L, Lavor C, Maculan N, A branch-And-prune algorithm for the molecular distance geometry problem, Int Transact Oper Res 15:1-17, 2008.
    • (2008) Int. Transact. Oper. Res. , vol.15 , pp. 1-17
    • Liberti, L.1    Lavor, C.2    Maculan, N.3
  • 13
    • 78149236724 scopus 로고    scopus 로고
    • MD-jeep: An implementation of a branch & prune algorithm for distance geometry problems in Fukuda K et al. (ed
    • of Lectures Notes in Computer Science, Kobe, Japan Springer
    • Mucherino A, Liberti L, Lavor C, MD-jeep: An implementation of a branch & prune algorithm for distance geometry problems, in Fukuda K et al. (ed), Proc Third Int Congress on Mathematical Software (ICMS10), volume 6327 of Lectures Notes in Computer Science, Kobe, Japan, Springer, pp. 186-197, 2010.
    • (2010) Proc Third Int Congress on Mathematical Software (ICMS10) , vol.6327 , pp. 186-197
    • Mucherino, A.1    Liberti, L.2    Lavor, C.3
  • 15
    • 84929611095 scopus 로고    scopus 로고
    • The interval branch-And-prune algorithm for the discretizable molecular distance geometry problem with inexact distances to appear
    • Lavor C, Liberti L, Mucherino A, The interval Branch-And-Prune Algorithm for the discretizable molecular distance geometry problem with inexact distances, to appear in J Global Opt, 2012.
    • J. Global. Opt. , vol.2012
    • Lavor, C.1    Liberti, L.2    Mucherino, A.3
  • 16
    • 78149264118 scopus 로고    scopus 로고
    • Discrete approaches for solving molecular distance geometry problems using NMR data
    • Lavor C, Mucherino A, Liberti L, Maculan N, Discrete approaches for solving molecular distance geometry problems using NMR data, Int J Comput Biosci 1:88-94, 2011.
    • (2011) Int. J. Comput. Biosci. , vol.1 , pp. 88-94
    • Lavor, C.1    Mucherino, A.2    Liberti, L.3    Maculan, N.4
  • 17
    • 79955868839 scopus 로고    scopus 로고
    • On the computation of protein backbones by using articial backbones of hydrogens
    • Lavor C, Mucherino A, Liberti L, Maculan N, On the computation of protein backbones by using articial backbones of hydrogens, J Global Optim 50:329-344, 2011.
    • (2011) J. Global. Optim. , vol.50 , pp. 329-344
    • Lavor, C.1    Mucherino, A.2    Liberti, L.3    Maculan, N.4
  • 18
    • 79955851810 scopus 로고    scopus 로고
    • In̊uence of pruning devices on the solution of molecular distance geometry problems
    • in Pardalos PM, Rebennack S, (ed of Lecture Notes in Computer Science, Crete, Greece Springer
    • Mucherino A, Lavor C, Malliavin T, Liberti L, Nilges, M, Maculan N, In̊uence of pruning devices on the solution of molecular distance geometry problems, in Pardalos PM, Rebennack S, (ed), Proc 10th Int Symp on Experimental Algorithms (SEA11), volume 6630 of Lecture Notes in Computer Science, Crete, Greece, Springer, 2011, pp. 206-217.
    • (2011) Proc 10th Int Symp on Experimental Algorithms (SEA11) , vol.6630 , pp. 206-217
    • Mucherino, A.1    Lavor, C.2    Malliavin, T.3    Liberti, L.4    Nilges, M.5    Maculan, N.6
  • 22
    • 72949101175 scopus 로고    scopus 로고
    • On generating instances for the molecular distance geometry problem
    • Liberti L, Maculan N (eds Springer, New York
    • Lavor C, On generating instances for the molecular distance geometry problem in Liberti L, Maculan N (eds) Global Optimization: From Theory to Implementation, Springer, New York, pp. 405-414.
    • Global Optimization: From Theory to Implementation , pp. 405-414
    • Lavor, C.1
  • 24
    • 84856002031 scopus 로고    scopus 로고
    • A symmetry-driven BP algorithm for the discretizable molecular distance geometry problem
    • Int Conf Bioinformatics & Biomedicine (BIBM11), Atlanta, GA, USA
    • Mucherino A, Lavor C, Liberti L, A symmetry-driven BP algorithm for the discretizable molecular distance geometry problem, IEEE Conf Proc Computational Structural Bioinformatics Workshop (CSBW11), Int Conf Bioinformatics & Biomedicine (BIBM11), Atlanta, GA, USA, pp. 390-395, 2011.
    • (2011) IEEE Conf Proc Computational Structural Bioinformatics Workshop (CSBW11) , pp. 390-395
    • Mucherino, A.1    Lavor, C.2    Liberti, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.