-
1
-
-
0033954256
-
The protein data bank
-
Berman H., Westbrook J., Feng Z., Gilliland G., Bhat T., Weissig H., Shindyalov I., Bourne P.: The protein data bank. Nucleic Acid Res. 28, 235-242 (2000).
-
(2000)
Nucleic Acid Res.
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
3
-
-
52049122134
-
Extending the geometric build-up algorithm for the molecular distance geometry problem
-
Carvalho R., Lavor C., Protti F.: Extending the geometric build-up algorithm for the molecular distance geometry problem. Inf. Process. Lett. 108, 234-237 (2008).
-
(2008)
Inf. Process. Lett.
, vol.108
, pp. 234-237
-
-
Carvalho, R.1
Lavor, C.2
Protti, F.3
-
4
-
-
0019080236
-
Best sorting algorithm for nearly sorted lists
-
Cook C., Kim D.: Best sorting algorithm for nearly sorted lists. Commun. ACM 23(11), 620-624 (1980).
-
(1980)
Commun. ACM
, vol.23
, Issue.11
, pp. 620-624
-
-
Cook, C.1
Kim, D.2
-
5
-
-
84867962761
-
A geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data
-
Dong Q., Wu Z.: A geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data. J. Global Optim. 26, 321-333 (2003).
-
(2003)
J. Global Optim.
, vol.26
, pp. 321-333
-
-
Dong, Q.1
Wu, Z.2
-
6
-
-
8344261381
-
Rigidity, computation, and randomization in network localization
-
Eren, T., Goldenberg, D., Whiteley, W., Yang, Y., Morse, A., Anderson, B., Belhumeur, P.: Rigidity, computation, and randomization in network localization. IEEE Infocom Proceedings pp. 2673-2684 (2004).
-
(2004)
IEEE Infocom Proceedings
, pp. 2673-2684
-
-
Eren, T.1
Goldenberg, D.2
Whiteley, W.3
Yang, Y.4
Morse, A.5
Anderson, B.6
Belhumeur, P.7
-
8
-
-
84884281431
-
Multispace search for protein folding
-
L. Biegler, T. Coleman, A. Conn, and F. Santosa (Eds.), Berlin: Springer
-
Gu J., Du B., Pardalos P.: Multispace search for protein folding. In: Biegler, L., Coleman, T., Conn, A., Santosa, F. (eds) Large-scale optimization with applications, Part III: molecular structure and optimization, pp. 47-68. Springer, Berlin (1997).
-
(1997)
Large-Scale Optimization with Applications, Part III: Molecular Structure and Optimization
, pp. 47-68
-
-
Gu, J.1
Du, B.2
Pardalos, P.3
-
10
-
-
33646561999
-
A multivariate partition approach to optimization problems
-
Huang H., Pardalos P.: A multivariate partition approach to optimization problems. Cyber. Syst. Anal. 38, 265-275 (2002).
-
(2002)
Cyber. Syst. Anal.
, vol.38
, pp. 265-275
-
-
Huang, H.1
Pardalos, P.2
-
11
-
-
84867966586
-
Some properties for the Euclidean distance matrix and positive semidefinite matrix completion problems
-
Huang H. X., Liang Z. A., Pardalos P.: Some properties for the Euclidean distance matrix and positive semidefinite matrix completion problems. J. Global Optim. 25, 3-21 (2003).
-
(2003)
J. Global Optim.
, vol.25
, pp. 3-21
-
-
Huang, H.X.1
Liang, Z.A.2
Pardalos, P.3
-
12
-
-
84859159372
-
-
ILOG: ILOG CPLEX 11. ILOG S. A., Gentilly, France
-
ILOG: ILOG CPLEX 11. 0 User's Manual. ILOG S. A., Gentilly, France (2008).
-
(2008)
0 User's Manual
-
-
-
13
-
-
84857920830
-
-
Tech. Rep. 0908. 1366v1, arXiv
-
Jiao, Y., Stillinger, F., Torquato, S.: Geometrical ambiguity of pair statistics I. point configurations. Tech. Rep. 0908. 1366v1, arXiv (2009).
-
(2009)
Geometrical ambiguity of pair statistics I. point configurations
-
-
Jiao, Y.1
Stillinger, F.2
Torquato, S.3
-
14
-
-
59449086627
-
Computational experience with the molecular distance geometry problem
-
J. Pintér (Ed.), Berlin: Springer
-
Lavor C., Liberti L., Maculan N.: Computational experience with the molecular distance geometry problem. In: Pintér, J. (eds) Global optimization: scientific and engineering case studies., pp. 213-225. Springer, Berlin (2006).
-
(2006)
Global Optimization: Scientific and Engineering Case Studies.
, pp. 213-225
-
-
Lavor, C.1
Liberti, L.2
Maculan, N.3
-
15
-
-
78049476090
-
-
Tech. Rep. q-bio/0608012, arXiv
-
Lavor, C., Liberti, L., Maculan, N.: The discretizable molecular distance geometry problem. Tech. Rep. q-bio/0608012, arXiv (2006).
-
(2006)
The discretizable molecular distance geometry problem
-
-
Lavor, C.1
Liberti, L.2
Maculan, N.3
-
16
-
-
72749085157
-
Molecular distance geometry problem
-
2nd edn., C. Floudas and P. Pardalos (Eds.), New York: Springer
-
Lavor C., Liberti L., Maculan N.: Molecular distance geometry problem. In: Floudas, C., Pardalos, P. (eds) Encyclopedia of optimization, second edn., pp. 2305-2311. Springer, New York (2009).
-
(2009)
Encyclopedia of Optimization
, pp. 2305-2311
-
-
Lavor, C.1
Liberti, L.2
Maculan, N.3
-
17
-
-
84861967373
-
The discretizable molecular distance geometry problem
-
(accepted)
-
Lavor, C., Liberti, L., Maculan, N., Mucherino, A.: The discretizable molecular distance geometry problem. Comput. Optim. Appl. (accepted).
-
Comput. Optim. Appl.
-
-
Lavor, C.1
Liberti, L.2
Maculan, N.3
Mucherino, A.4
-
18
-
-
72949109097
-
On a discretizable subclass of instances of the molecular distance geometry problem
-
In: Shin, D. (ed.), ACM
-
Lavor, C., Liberti, L., Mucherino, A., Maculan, N.: On a discretizable subclass of instances of the molecular distance geometry problem. In: Shin, D. (ed.) Proceedings of the 24th Annual ACM Symposium on Applied Computing, pp. 804-805. ACM (2009).
-
(2009)
Proceedings of the 24th Annual ACM Symposium on Applied Computing
, pp. 804-805
-
-
Lavor, C.1
Liberti, L.2
Mucherino, A.3
Maculan, N.4
-
19
-
-
78649747807
-
Computing artificial backbones of hydrogen atoms in order to discover protein backbones
-
IEEE, Mragowo, Poland
-
Lavor, C., Mucherino, A., Liberti, L., Maculan, N.: Computing artificial backbones of hydrogen atoms in order to discover protein backbones. In: Proceedings of the International Multiconference on Computer Science and Information Technology, pp. 751-756. IEEE, Mragowo, Poland (2009).
-
(2009)
Proceedings of the International Multiconference on Computer Science and Information Technology
, pp. 751-756
-
-
Lavor, C.1
Mucherino, A.2
Liberti, L.3
Maculan, N.4
-
20
-
-
79955868839
-
On the computation of protein backbones by using artificial backbones of hydrogens
-
(accepted). doi: 10. 1007/s10898-010-9584-y
-
Lavor, C., Mucherino, A., Liberti, L., Maculan, N.: On the computation of protein backbones by using artificial backbones of hydrogens. J. Global Optim. (accepted). doi: 10. 1007/s10898-010-9584-y.
-
J. Global Optim.
-
-
Lavor, C.1
Mucherino, A.2
Liberti, L.3
Maculan, N.4
-
21
-
-
84859162922
-
On the solution of molecular distance geometry problems with interval data
-
IEEE, Hong Kong
-
Lavor, C., Mucherino, A., Liberti, L., Maculan, N.: On the solution of molecular distance geometry problems with interval data. In: Proceedings of the International Workshop on Computational Proteomics. IEEE, Hong Kong (2010).
-
(2010)
Proceedings of the International Workshop on Computational Proteomics
-
-
Lavor, C.1
Mucherino, A.2
Liberti, L.3
Maculan, N.4
-
22
-
-
68949155001
-
A branch-and-prune algorithm for the molecular distance geometry problem
-
Liberti L., Lavor C., Maculan N.: A branch-and-prune algorithm for the molecular distance geometry problem. Int. Trans. Oper. Res. 15, 1-17 (2008).
-
(2008)
Int. Trans. Oper. Res.
, vol.15
, pp. 1-17
-
-
Liberti, L.1
Lavor, C.2
Maculan, N.3
-
23
-
-
84863430641
-
Molecular distance geometry methods: from continuous to discrete
-
Liberti L., Lavor C., Mucherino A., Maculan N.: Molecular distance geometry methods: from continuous to discrete. Int. Trans. Oper. Res. 18, 33-51 (2010).
-
(2010)
Int. Trans. Oper. Res.
, vol.18
, pp. 33-51
-
-
Liberti, L.1
Lavor, C.2
Mucherino, A.3
Maculan, N.4
-
24
-
-
84859162923
-
-
Tech. Rep. 1010. 1834v1[cs. DM], arXiv
-
Liberti, L., Masson, B., Lavor, C., Lee, J., Mucherino, A.: On the number of solutions of the discretizable molecular distance geometry problem. Tech. Rep. 1010. 1834v1[cs. DM], arXiv (2010).
-
(2010)
On the number of solutions of the discretizable molecular distance geometry problem
-
-
Liberti, L.1
Masson, B.2
Lavor, C.3
Lee, J.4
Mucherino, A.5
-
25
-
-
0031285908
-
Global continuation for distance geometry problems
-
Moré J., Wu Z.: Global continuation for distance geometry problems. SIAM J. Optim. 7(3), 814-846 (1997).
-
(1997)
SIAM J. Optim.
, vol.7
, Issue.3
, pp. 814-846
-
-
Moré, J.1
Wu, Z.2
-
26
-
-
78149241977
-
The branch and prune algorithm for the molecular distance geometry problem with inexact distances
-
World Academy of Science, Engineering and Technology
-
Mucherino, A., Lavor, C.: The branch and prune algorithm for the molecular distance geometry problem with inexact distances. In: Proceedings of the International Conference on Computational Biology, vol. 58, pp. 349-353. World Academy of Science, Engineering and Technology (2009).
-
(2009)
Proceedings of the International Conference on Computational Biology
, vol.58
, pp. 349-353
-
-
Mucherino, A.1
Lavor, C.2
-
28
-
-
79952019950
-
On the definition of artificial backbones for the discretizable molecular distance geometry problem
-
Mucherino A., Lavor C., Liberti L., Maculan N.: On the definition of artificial backbones for the discretizable molecular distance geometry problem. Mathematica Balkanica 23, 289-302 (2009).
-
(2009)
Mathematica Balkanica
, vol.23
, pp. 289-302
-
-
Mucherino, A.1
Lavor, C.2
Liberti, L.3
Maculan, N.4
-
29
-
-
79956223394
-
The molecular distance geometry problem applied to protein conformations
-
In: Cafieri, S., Mucherino, A., Nannicini, G., Tarissan, F., Liberti, L. (eds.), École Polytechnique, Paris
-
Mucherino, A., Lavor, C., Maculan, N.: The molecular distance geometry problem applied to protein conformations. In: Cafieri, S., Mucherino, A., Nannicini, G., Tarissan, F., Liberti, L. (eds.) Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, pp. 337-340. École Polytechnique, Paris (2009).
-
(2009)
Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization
, pp. 337-340
-
-
Mucherino, A.1
Lavor, C.2
Maculan, N.3
-
30
-
-
72749092411
-
Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem
-
In: Rothlauf, F. (ed.), ACM, Montreal
-
Mucherino, A., Liberti, L., Lavor, C., Maculan, N.: Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem. In: Rothlauf, F. (ed.) Proceedings of the Genetic and Evolutionary Computation Conference, pp. 333-340. ACM, Montreal (2009).
-
(2009)
Proceedings of the Genetic and Evolutionary Computation Conference
, pp. 333-340
-
-
Mucherino, A.1
Liberti, L.2
Lavor, C.3
Maculan, N.4
-
31
-
-
0347431853
-
A tabu based pattern search method for the distance geometry problem
-
F. Giannessi, T. Rapcsák, S. Komlósi (Eds.), Dordrecht: Kluwer
-
Pardalos P., Liu X.: A tabu based pattern search method for the distance geometry problem. In: Giannessi, F., Rapcsák, T., Komlósi, S. (eds) (eds.) New trends in mathematical programming, Kluwer, Dordrecht (1998).
-
(1998)
New Trends in Mathematical Programming
-
-
Pardalos, P.1
Liu, X.2
-
32
-
-
84859157148
-
-
(eds.), Am. Math. Soc
-
Pardalos, P., Shalloway, D., Xue, G. (eds.) (1996) Global minimization of nonconvex energy functions: molecular conformation and protein folding, vol. 23. Am. Math. Soc.
-
(1996)
Global minimization of nonconvex energy functions: Molecular conformation and protein folding
, vol.23
-
-
Pardalos, P.1
Shalloway, D.2
Xue, G.3
-
33
-
-
24944510331
-
Finding, counting and listing all triangles in large graphs, an experimental study
-
S. Nikoletseas (Ed.), Berlin: Springer
-
Schank T., Wagner D.: Finding, counting and listing all triangles in large graphs, an experimental study. In: Nikoletseas, S. (eds) Workshop on Experimental Algorithms, LNCS, vol. 3503, pp. 606-609. Springer, Berlin (2005).
-
(2005)
Workshop on Experimental Algorithms, LNCS
, vol.3503
, pp. 606-609
-
-
Schank, T.1
Wagner, D.2
-
34
-
-
33846661142
-
Theory of semidefinite programming for sensor network localization
-
So M. C., Ye Y.: Theory of semidefinite programming for sensor network localization. Math. Program. 109, 367-384 (2007).
-
(2007)
Math. Program.
, vol.109
, pp. 367-384
-
-
So, M.C.1
Ye, Y.2
-
35
-
-
33847251002
-
An updated geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data
-
Wu D., Wu Z.: An updated geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data. J. Global Optim. 37, 661-673 (2007).
-
(2007)
J. Global Optim.
, vol.37
, pp. 661-673
-
-
Wu, D.1
Wu, Z.2
-
36
-
-
43249103721
-
Rigid versus unique determination of protein structures with geometric buildup
-
Wu D., Wu Z., Yuan Y.: Rigid versus unique determination of protein structures with geometric buildup. Optim. Lett. 2(3), 319-331 (2008).
-
(2008)
Optim. Lett.
, vol.2
, Issue.3
, pp. 319-331
-
-
Wu, D.1
Wu, Z.2
Yuan, Y.3
|