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Volumn 504, Issue 1, 2012, Pages 102-106

Revisit on the evolutionary relationship between alternative splicing and gene duplication

Author keywords

Alternative splicing; Copy number variation; Exon intron structure; Gene duplication

Indexed keywords

ALTERNATIVE RNA SPLICING; ARTICLE; EXON; GENE DUPLICATION; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC VARIABILITY; HYPOTHESIS; INTRON; PRIORITY JOURNAL;

EID: 84862335811     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.05.012     Document Type: Article
Times cited : (18)

References (51)
  • 1
    • 0036265853 scopus 로고    scopus 로고
    • Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish
    • Altschmied J., et al. Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish. Genetics 2002, 161:259-267.
    • (2002) Genetics , vol.161 , pp. 259-267
    • Altschmied, J.1
  • 2
    • 50649109231 scopus 로고    scopus 로고
    • Genome-wide analyses of alternative splicing in plants: opportunities and challenges
    • Barbazuk W.B., Fu Y., McGinnis K.M. Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res. 2008, 18:1381-1392.
    • (2008) Genome Res. , vol.18 , pp. 1381-1392
    • Barbazuk, W.B.1    Fu, Y.2    McGinnis, K.M.3
  • 3
    • 39149126359 scopus 로고    scopus 로고
    • Alternative splicing and protein structure evolution
    • Birzele F., Csaba G., Zimmer R. Alternative splicing and protein structure evolution. Nucleic Acids Res. 2008, 36:550-558.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 550-558
    • Birzele, F.1    Csaba, G.2    Zimmer, R.3
  • 4
    • 0034716987 scopus 로고    scopus 로고
    • EST comparison indicates 38% of human mRNAs contain possible alternative splice forms
    • Brett D., et al. EST comparison indicates 38% of human mRNAs contain possible alternative splice forms. FEBS Lett. 2000, 474:83-86.
    • (2000) FEBS Lett. , vol.474 , pp. 83-86
    • Brett, D.1
  • 7
    • 1642385302 scopus 로고    scopus 로고
    • Evolutionary convergence of alternative splicing in ion channels
    • Copley R.R. Evolutionary convergence of alternative splicing in ion channels. Trends Genet. 2004, 20:171-176.
    • (2004) Trends Genet. , vol.20 , pp. 171-176
    • Copley, R.R.1
  • 8
    • 34248662670 scopus 로고    scopus 로고
    • When gene marriages don't work out: divorce by subfunctionalization
    • Cusack B.P., Wolfe K.H. When gene marriages don't work out: divorce by subfunctionalization. Trends Genet. 2007, 23:270-272.
    • (2007) Trends Genet. , vol.23 , pp. 270-272
    • Cusack, B.P.1    Wolfe, K.H.2
  • 9
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force A., Lynch M., Pickett F.B., Amores A., Yan Y.L., Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151:1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 10
    • 77957737256 scopus 로고    scopus 로고
    • Identification of copy number variation hotspots in human populations
    • Fu W., Zhang F., Wang Y., Gu X., Jin L. Identification of copy number variation hotspots in human populations. Am. J. Hum. Genet. 2010, 87:494-504.
    • (2010) Am. J. Hum. Genet. , vol.87 , pp. 494-504
    • Fu, W.1    Zhang, F.2    Wang, Y.3    Gu, X.4    Jin, L.5
  • 11
    • 78651320424 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: update 2011
    • Fujita P.A., et al. The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 2011, 39:D876-D882.
    • (2011) Nucleic Acids Res. , vol.39
    • Fujita, P.A.1
  • 12
    • 0035252410 scopus 로고    scopus 로고
    • Alternative splicing: increasing diversity in the proteomic world
    • Graveley B.R. Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 2001, 17:100-107.
    • (2001) Trends Genet. , vol.17 , pp. 100-107
    • Graveley, B.R.1
  • 13
    • 0036613509 scopus 로고    scopus 로고
    • Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
    • Gu X., Wang Y., Gu J. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat. Genet. 2002, 31:205-209.
    • (2002) Nat. Genet. , vol.31 , pp. 205-209
    • Gu, X.1    Wang, Y.2    Gu, J.3
  • 14
    • 4444270781 scopus 로고    scopus 로고
    • Genome wide identification and classification of alternative splicing based on EST data
    • Gupta S., Zink D., Korn B., Vingron M., Haas S.A. Genome wide identification and classification of alternative splicing based on EST data. Bioinformatics 2004, 20:2579-2585.
    • (2004) Bioinformatics , vol.20 , pp. 2579-2585
    • Gupta, S.1    Zink, D.2    Korn, B.3    Vingron, M.4    Haas, S.A.5
  • 15
    • 66049131300 scopus 로고    scopus 로고
    • Decrypting the genome's alternative messages
    • Hartmann B., Valcarcel J. Decrypting the genome's alternative messages. Curr. Opin. Cell Biol. 2009, 21:377-386.
    • (2009) Curr. Opin. Cell Biol. , vol.21 , pp. 377-386
    • Hartmann, B.1    Valcarcel, J.2
  • 16
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • Hughes A.L. The evolution of functionally novel proteins after gene duplication. Proc. Biol. Sci. 1994, 256:119-124.
    • (1994) Proc. Biol. Sci. , vol.256 , pp. 119-124
    • Hughes, A.L.1
  • 18
    • 77953790078 scopus 로고    scopus 로고
    • Internal and external paralogy in the evolution of tropomyosin genes in metazoans
    • Irimia M., Maeso I., Gunning P.W., Garcia-Fernandez J., Roy S.W. Internal and external paralogy in the evolution of tropomyosin genes in metazoans. Mol. Biol. Evol. 2010, 27:1504-1517.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1504-1517
    • Irimia, M.1    Maeso, I.2    Gunning, P.W.3    Garcia-Fernandez, J.4    Roy, S.W.5
  • 19
    • 55149125112 scopus 로고    scopus 로고
    • The evolutionary relationship between gene duplication and alternative splicing
    • Jin L., et al. The evolutionary relationship between gene duplication and alternative splicing. Gene 2008, 427:19-31.
    • (2008) Gene , vol.427 , pp. 19-31
    • Jin, L.1
  • 20
    • 0035036534 scopus 로고    scopus 로고
    • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
    • Kan Z., Rouchka E.C., Gish W.R., States D.J. Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Res. 2001, 11:889-900.
    • (2001) Genome Res. , vol.11 , pp. 889-900
    • Kan, Z.1    Rouchka, E.C.2    Gish, W.R.3    States, D.J.4
  • 21
    • 77951120000 scopus 로고    scopus 로고
    • Alternative splicing and evolution: diversification, exon definition and function
    • Keren H., Lev-Maor G., Ast G. Alternative splicing and evolution: diversification, exon definition and function. Nat. Rev. Genet. 2010, 11:345-355.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 345-355
    • Keren, H.1    Lev-Maor, G.2    Ast, G.3
  • 22
    • 4444346326 scopus 로고    scopus 로고
    • Estimating rates of alternative splicing in mammals and invertebrates
    • (author reply 916-7)
    • Kim H., Klein R., Majewski J., Ott J. Estimating rates of alternative splicing in mammals and invertebrates. Nat. Genet. 2004, 36:915-916. (author reply 916-7).
    • (2004) Nat. Genet. , vol.36 , pp. 915-916
    • Kim, H.1    Klein, R.2    Majewski, J.3    Ott, J.4
  • 23
    • 77953809541 scopus 로고    scopus 로고
    • Constraints and plasticity in genome and molecular-phenome evolution
    • Koonin E.V., Wolf Y.I. Constraints and plasticity in genome and molecular-phenome evolution. Nat. Rev. Genet. 2010, 11:487-498.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 487-498
    • Koonin, E.V.1    Wolf, Y.I.2
  • 24
    • 20044383938 scopus 로고    scopus 로고
    • Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms
    • Kopelman N.M., Lancet D., Yanai I. Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms. Nat. Genet. 2005, 37:588-589.
    • (2005) Nat. Genet. , vol.37 , pp. 588-589
    • Kopelman, N.M.1    Lancet, D.2    Yanai, I.3
  • 25
    • 0345316714 scopus 로고    scopus 로고
    • Increase of functional diversity by alternative splicing
    • Kriventseva E.V., et al. Increase of functional diversity by alternative splicing. Trends Genet. 2003, 19:124-128.
    • (2003) Trends Genet. , vol.19 , pp. 124-128
    • Kriventseva, E.V.1
  • 27
    • 55249106663 scopus 로고    scopus 로고
    • Diverse splicing patterns of exonized Alu elements in human tissues
    • Lin L., et al. Diverse splicing patterns of exonized Alu elements in human tissues. PLoS Genet. 2008, 4:e1000225.
    • (2008) PLoS Genet. , vol.4
    • Lin, L.1
  • 28
    • 0035884370 scopus 로고    scopus 로고
    • Duplicate mitf genes in zebrafish: complementary expression and conservation of melanogenic potential
    • Lister J.A., Close J., Raible D.W. Duplicate mitf genes in zebrafish: complementary expression and conservation of melanogenic potential. Dev. Biol. 2001, 237:333-344.
    • (2001) Dev. Biol. , vol.237 , pp. 333-344
    • Lister, J.A.1    Close, J.2    Raible, D.W.3
  • 29
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M., Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 2000, 290:1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 30
    • 0037062982 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing and proteome expansion in metazoans
    • Maniatis T., Tasic B. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature 2002, 418:236-243.
    • (2002) Nature , vol.418 , pp. 236-243
    • Maniatis, T.1    Tasic, B.2
  • 31
    • 0035393343 scopus 로고    scopus 로고
    • Genome-wide detection of alternative splicing in expressed sequences of human genes
    • Modrek B., Resch A., Grasso C., Lee C. Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Res. 2001, 29:2850-2859.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2850-2859
    • Modrek, B.1    Resch, A.2    Grasso, C.3    Lee, C.4
  • 32
    • 75849145292 scopus 로고    scopus 로고
    • Expansion of the eukaryotic proteome by alternative splicing
    • Nilsen T.W., Graveley B.R. Expansion of the eukaryotic proteome by alternative splicing. Nature 2011, 463:457-463.
    • (2011) Nature , vol.463 , pp. 457-463
    • Nilsen, T.W.1    Graveley, B.R.2
  • 33
    • 35248860123 scopus 로고    scopus 로고
    • Two paralogous genes encoding small subunits of ADP-glucose pyrophosphorylase in maize, Bt2 and L2, replace the single alternatively spliced gene found in other cereal species
    • Rosti S., Denyer K. Two paralogous genes encoding small subunits of ADP-glucose pyrophosphorylase in maize, Bt2 and L2, replace the single alternatively spliced gene found in other cereal species. J. Mol. Evol. 2007, 65:316-327.
    • (2007) J. Mol. Evol. , vol.65 , pp. 316-327
    • Rosti, S.1    Denyer, K.2
  • 34
    • 79952254962 scopus 로고    scopus 로고
    • Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication
    • Roux J., Robinson-Rechavi M. Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication. Genome Res. 2011, 21:357-363.
    • (2011) Genome Res. , vol.21 , pp. 357-363
    • Roux, J.1    Robinson-Rechavi, M.2
  • 36
    • 32044443159 scopus 로고    scopus 로고
    • Evolution of alternative splicing after gene duplication
    • Su Z., Wang J., Yu J., Huang X., Gu X. Evolution of alternative splicing after gene duplication. Genome Res. 2006, 16:182-189.
    • (2006) Genome Res. , vol.16 , pp. 182-189
    • Su, Z.1    Wang, J.2    Yu, J.3    Huang, X.4    Gu, X.5
  • 37
    • 75549090156 scopus 로고    scopus 로고
    • H-DBAS: human-transcriptome database for alternative splicing: update 2010
    • Takeda J., et al. H-DBAS: human-transcriptome database for alternative splicing: update 2010. Nucleic Acids Res. 2010, 38:D86-D90.
    • (2010) Nucleic Acids Res. , vol.38
    • Takeda, J.1
  • 39
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 40
    • 34248368920 scopus 로고    scopus 로고
    • The implications of alternative splicing in the ENCODE protein complement
    • Tress M.L., et al. The implications of alternative splicing in the ENCODE protein complement. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:5495-5500.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 5495-5500
    • Tress, M.L.1
  • 41
    • 0036777902 scopus 로고    scopus 로고
    • Alternative splicing in the testes
    • Venables J.P. Alternative splicing in the testes. Curr. Opin. Genet. Dev. 2002, 12:615-619.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 615-619
    • Venables, J.P.1
  • 42
    • 56549101959 scopus 로고    scopus 로고
    • Alternative isoform regulation in human tissue transcriptomes
    • Wang E.T., et al. Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456:470-476.
    • (2008) Nature , vol.456 , pp. 470-476
    • Wang, E.T.1
  • 43
    • 81755187310 scopus 로고    scopus 로고
    • De novo origin of human protein-coding genes
    • Wu D.D., Irwin D.M., Zhang Y.P. De novo origin of human protein-coding genes. PLoS Genet. 2011, 7:e1002379.
    • (2011) PLoS Genet. , vol.7
    • Wu, D.D.1    Irwin, D.M.2    Zhang, Y.P.3
  • 44
    • 4444365702 scopus 로고    scopus 로고
    • Negative selection pressure against premature protein truncation is reduced by alternative splicing and diploidy
    • Xing Y., Lee C.J. Negative selection pressure against premature protein truncation is reduced by alternative splicing and diploidy. Trends Genet. 2004, 20:472-475.
    • (2004) Trends Genet. , vol.20 , pp. 472-475
    • Xing, Y.1    Lee, C.J.2
  • 46
    • 0037384351 scopus 로고    scopus 로고
    • Duplication, degeneration and subfunctionalization of the nested synapsin-Timp genes in Fugu
    • Yu W.P., Brenner S., Venkatesh B. Duplication, degeneration and subfunctionalization of the nested synapsin-Timp genes in Fugu. Trends Genet. 2003, 19:180-183.
    • (2003) Trends Genet. , vol.19 , pp. 180-183
    • Yu, W.P.1    Brenner, S.2    Venkatesh, B.3
  • 47
    • 75649098860 scopus 로고    scopus 로고
    • Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis
    • Yuan Y., et al. Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:22020-22025.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 22020-22025
    • Yuan, Y.1
  • 48
    • 78349307207 scopus 로고    scopus 로고
    • Evolution of alternative splicing in newly evolved genes of Drosophila
    • Zhan Z., Ren J., Zhang Y., Zhao R., Yang S., Wang W. Evolution of alternative splicing in newly evolved genes of Drosophila. Gene 2010, 470:1-6.
    • (2010) Gene , vol.470 , pp. 1-6
    • Zhan, Z.1    Ren, J.2    Zhang, Y.3    Zhao, R.4    Yang, S.5    Wang, W.6
  • 50
    • 77953788021 scopus 로고    scopus 로고
    • Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis
    • Zhang P.G., Huang S.Z., Pin A.L., Adams K.L. Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis. Mol. Biol. Evol. 2010, 27:1686-1697.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1686-1697
    • Zhang, P.G.1    Huang, S.Z.2    Pin, A.L.3    Adams, K.L.4
  • 51
    • 80053160148 scopus 로고    scopus 로고
    • Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids
    • Zhou R., Moshgabadi N., Adams K.L. Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:16122-16127.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 16122-16127
    • Zhou, R.1    Moshgabadi, N.2    Adams, K.L.3


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