-
2
-
-
78651372726
-
Histone deacetylase inhibitors control the transcription and alternative splicing of prohibitin in thyroid tumor cells
-
Puppin C, Passon N, Franzoni A, Russo D, Damante G, (2011) Histone deacetylase inhibitors control the transcription and alternative splicing of prohibitin in thyroid tumor cells. Oncology reports 25: 393-397.
-
(2011)
Oncology Reports
, vol.25
, pp. 393-397
-
-
Puppin, C.1
Passon, N.2
Franzoni, A.3
Russo, D.4
Damante, G.5
-
3
-
-
76149107814
-
Alternative splicing: regulation of HIV-1 multiplication as a target for therapeutic action
-
Tazi J, Bakkour N, Marchand V, Ayadi L, Aboufirassi A, et al. (2010) Alternative splicing: regulation of HIV-1 multiplication as a target for therapeutic action. The FEBS journal 277: 867-876.
-
(2010)
The FEBS Journal
, vol.277
, pp. 867-876
-
-
Tazi, J.1
Bakkour, N.2
Marchand, V.3
Ayadi, L.4
Aboufirassi, A.5
-
4
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
-
5
-
-
47249112264
-
Identification of motifs that function in the splicing of non-canonical introns
-
Murray JI, Voelker RB, Henscheid KL, Warf MB, Berglund JA, (2008) Identification of motifs that function in the splicing of non-canonical introns. Genome biology 9: R97.
-
(2008)
Genome Biology
, vol.9
-
-
Murray, J.I.1
Voelker, R.B.2
Henscheid, K.L.3
Warf, M.B.4
Berglund, J.A.5
-
7
-
-
35848950003
-
prp8 mutations that cause human retinitis pigmentosa lead to a U5 snRNP maturation defect in yeast
-
Boon KL, Grainger RJ, Ehsani P, Barrass JD, Auchynnikava T, et al. (2007) prp8 mutations that cause human retinitis pigmentosa lead to a U5 snRNP maturation defect in yeast. Nature structural & molecular biology 14: 1077-1083.
-
(2007)
Nature Structural & Molecular Biology
, vol.14
, pp. 1077-1083
-
-
Boon, K.L.1
Grainger, R.J.2
Ehsani, P.3
Barrass, J.D.4
Auchynnikava, T.5
-
8
-
-
10044270719
-
Restoration of the cystic fibrosis transmembrane conductance regulator function by splicing modulation
-
Nissim-Rafinia M, Aviram M, Randell SH, Shushi L, Ozeri E, et al. (2004) Restoration of the cystic fibrosis transmembrane conductance regulator function by splicing modulation. EMBO reports 5: 1071-1077.
-
(2004)
EMBO Reports
, vol.5
, pp. 1071-1077
-
-
Nissim-Rafinia, M.1
Aviram, M.2
Randell, S.H.3
Shushi, L.4
Ozeri, E.5
-
9
-
-
0025321505
-
Energy contributions of volatile fatty acids from the gastrointestinal tract in various species
-
Bergman EN, (1990) Energy contributions of volatile fatty acids from the gastrointestinal tract in various species. Physiological reviews 70: 567-590.
-
(1990)
Physiological Reviews
, vol.70
, pp. 567-590
-
-
Bergman, E.N.1
-
10
-
-
33749572256
-
Butyrate induces profound changes in gene expression related to multiple signal pathways in bovine kidney epithelial cells
-
Li RW, Li C, (2006) Butyrate induces profound changes in gene expression related to multiple signal pathways in bovine kidney epithelial cells. BMC genomics 7: 234.
-
(2006)
BMC Genomics
, vol.7
, pp. 234
-
-
Li, R.W.1
Li, C.2
-
11
-
-
84862248399
-
Transcriptome characterization by RNA-seq unravels the mechanisms of butyrate-induced epigenomic regulation in bovine cells
-
Wu S, Li RW, Li W, Li CJ, (2012) Transcriptome characterization by RNA-seq unravels the mechanisms of butyrate-induced epigenomic regulation in bovine cells. submitted.
-
(2012)
Submitted
-
-
Wu, S.1
Li, R.W.2
Li, W.3
Li, C.J.4
-
12
-
-
0029002337
-
Sodium butyrate inhibits c-myc splicing and interferes with signal transduction in ovarian carcinoma cells
-
Krupitza G, Harant H, Dittrich E, Szekeres T, Huber H, et al. (1995) Sodium butyrate inhibits c-myc splicing and interferes with signal transduction in ovarian carcinoma cells. Carcinogenesis 16: 1199-1205.
-
(1995)
Carcinogenesis
, vol.16
, pp. 1199-1205
-
-
Krupitza, G.1
Harant, H.2
Dittrich, E.3
Szekeres, T.4
Huber, H.5
-
13
-
-
78149465202
-
Butyrate increases the formation of anti-angiogenic vascular endothelial growth factor variants in human lung microvascular endothelial cells
-
Ciura J, Jagodzinski PP, (2010) Butyrate increases the formation of anti-angiogenic vascular endothelial growth factor variants in human lung microvascular endothelial cells. Molecular biology reports 37: 3729-3734.
-
(2010)
Molecular Biology Reports
, vol.37
, pp. 3729-3734
-
-
Ciura, J.1
Jagodzinski, P.P.2
-
14
-
-
77951820899
-
Fast and SNP-tolerant detection of complex variants and splicing in short reads
-
Wu TD, Nacu S, (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26: 873-881.
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
-
15
-
-
78649345104
-
MapSplice: accurate mapping of RNA-seq reads for splice junction discovery
-
Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, et al. (2010) MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic acids research 38: e178.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Wang, K.1
Singh, D.2
Zeng, Z.3
Coleman, S.J.4
Huang, Y.5
-
16
-
-
48549085068
-
Accumulation of GC donor splice signals in mammals
-
Churbanov A, Winters-Hilt S, Koonin EV, Rogozin IB, (2008) Accumulation of GC donor splice signals in mammals. Biology direct 3: 30.
-
(2008)
Biology Direct
, vol.3
, pp. 30
-
-
Churbanov, A.1
Winters-Hilt, S.2
Koonin, E.V.3
Rogozin, I.B.4
-
17
-
-
78751650428
-
Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
-
Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, et al. (2011) Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples. BMC medical genomics 4: 11.
-
(2011)
BMC Medical Genomics
, vol.4
, pp. 11
-
-
Nacu, S.1
Yuan, W.2
Kan, Z.3
Bhatt, D.4
Rivers, C.S.5
-
18
-
-
78649714014
-
Analysis and design of RNA sequencing experiments for identifying isoform regulation
-
Katz Y, Wang ET, Airoldi EM, Burge CB, (2010) Analysis and design of RNA sequencing experiments for identifying isoform regulation. Nature methods 7: 1009-1015.
-
(2010)
Nature Methods
, vol.7
, pp. 1009-1015
-
-
Katz, Y.1
Wang, E.T.2
Airoldi, E.M.3
Burge, C.B.4
-
19
-
-
84872499937
-
Quantification of transcriptome responses of the rumen epithelium to butyrate infusion
-
Baldwin RLV, Wu S, Li W, Li CJ, Bequette BJ, et al. (2012) Quantification of transcriptome responses of the rumen epithelium to butyrate infusion. submitted.
-
(2012)
Submitted
-
-
Baldwin, R.L.V.1
Wu, S.2
Li, W.3
Li, C.J.4
Bequette, B.J.5
-
20
-
-
79955932718
-
Potential beneficial effects of butyrate in intestinal and extraintestinal diseases
-
Canani RB, Costanzo MD, Leone L, Pedata M, Meli R, et al. (2011) Potential beneficial effects of butyrate in intestinal and extraintestinal diseases. World journal of gastroenterology: WJG 17: 1519-1528.
-
(2011)
World Journal of Gastroenterology: WJG
, vol.17
, pp. 1519-1528
-
-
Canani, R.B.1
Costanzo, M.D.2
Leone, L.3
Pedata, M.4
Meli, R.5
-
21
-
-
0344407016
-
Histone deacetylases: unique players in shaping the epigenetic histone code
-
Thiagalingam S, Cheng KH, Lee HJ, Mineva N, Thiagalingam A, et al. (2003) Histone deacetylases: unique players in shaping the epigenetic histone code. Annals of the New York Academy of Sciences 983: 84-100.
-
(2003)
Annals of the New York Academy of Sciences
, vol.983
, pp. 84-100
-
-
Thiagalingam, S.1
Cheng, K.H.2
Lee, H.J.3
Mineva, N.4
Thiagalingam, A.5
-
22
-
-
84862777940
-
Genome-wide ChIP-seq mapping and analysis reveal butyrate-induced acetylation of H3K9 and H3K27 correlated with transcription activity in bovine cells
-
Shin JH, Li RW, Gao Y, Baldwin RT, Li CJ, (2012) Genome-wide ChIP-seq mapping and analysis reveal butyrate-induced acetylation of H3K9 and H3K27 correlated with transcription activity in bovine cells. Functional & integrative genomics 12: 119-130.
-
(2012)
Functional & Integrative Genomics
, vol.12
, pp. 119-130
-
-
Shin, J.H.1
Li, R.W.2
Gao, Y.3
Baldwin, R.T.4
Li, C.J.5
-
23
-
-
30644463203
-
Microarray analysis of butyrate regulated genes in colonic epithelial cells
-
Daly K, Shirazi-Beechey SP, (2006) Microarray analysis of butyrate regulated genes in colonic epithelial cells. DNA and cell biology 25: 49-62.
-
(2006)
DNA and Cell Biology
, vol.25
, pp. 49-62
-
-
Daly, K.1
Shirazi-Beechey, S.P.2
-
24
-
-
77953475357
-
Butyrate induced cell cycle arrest in bovine cells through targeting gene expression relevant to DNA replication apparatus
-
Li CJ, Li RW, (2008) Butyrate induced cell cycle arrest in bovine cells through targeting gene expression relevant to DNA replication apparatus. Gene regulation and systems biology 2: 113-123.
-
(2008)
Gene Regulation and Systems Biology
, vol.2
, pp. 113-123
-
-
Li, C.J.1
Li, R.W.2
-
25
-
-
0344897251
-
Gene expression profile of butyrate-inhibited vascular smooth muscle cell proliferation
-
Ranganna K, Yousefipour Z, Yatsu FM, Milton SG, Hayes BE, (2003) Gene expression profile of butyrate-inhibited vascular smooth muscle cell proliferation. Molecular and cellular biochemistry 254: 21-36.
-
(2003)
Molecular and Cellular Biochemistry
, vol.254
, pp. 21-36
-
-
Ranganna, K.1
Yousefipour, Z.2
Yatsu, F.M.3
Milton, S.G.4
Hayes, B.E.5
-
26
-
-
34249802923
-
Pathway analysis identifies perturbation of genetic networks induced by butyrate in a bovine kidney epithelial cell line
-
Li CJ, Li RW, Wang YH, Elsasser TH, (2007) Pathway analysis identifies perturbation of genetic networks induced by butyrate in a bovine kidney epithelial cell line. Functional & integrative genomics 7: 193-205.
-
(2007)
Functional & Integrative Genomics
, vol.7
, pp. 193-205
-
-
Li, C.J.1
Li, R.W.2
Wang, Y.H.3
Elsasser, T.H.4
-
27
-
-
79551650971
-
Histone deacetylase activity modulates alternative splicing
-
Hnilicova J, Hozeifi S, Duskova E, Icha J, Tomankova T, et al. (2011) Histone deacetylase activity modulates alternative splicing. PloS one 6: e16727.
-
(2011)
PloS One
, vol.6
-
-
Hnilicova, J.1
Hozeifi, S.2
Duskova, E.3
Icha, J.4
Tomankova, T.5
-
28
-
-
0038676409
-
Inhibition of histone deacetylase activity by butyrate
-
Davie JR, (2003) Inhibition of histone deacetylase activity by butyrate. The Journal of nutrition 133: 2485S-2493S.
-
(2003)
The Journal of Nutrition
, vol.133
-
-
Davie, J.R.1
-
29
-
-
77958523925
-
NAD(+) -dependent histone deacetylases (sirtuins) as novel therapeutic targets
-
Schemies J, Uciechowska U, Sippl W, Jung M, (2010) NAD(+)-dependent histone deacetylases (sirtuins) as novel therapeutic targets. Medicinal research reviews 30: 861-889.
-
(2010)
Medicinal Research Reviews
, vol.30
, pp. 861-889
-
-
Schemies, J.1
Uciechowska, U.2
Sippl, W.3
Jung, M.4
-
30
-
-
84860849481
-
Role of sirtuins, calorie restriction and physical activity in aging
-
Corbi G, Conti V, Scapagnini G, Filippelli A, Ferrara N, (2012) Role of sirtuins, calorie restriction and physical activity in aging. Frontiers in bioscience 4: 768-778.
-
(2012)
Frontiers in Bioscience
, vol.4
, pp. 768-778
-
-
Corbi, G.1
Conti, V.2
Scapagnini, G.3
Filippelli, A.4
Ferrara, N.5
-
32
-
-
0141526319
-
Differential regulation of the Sir2 histone deacetylase gene family by inhibitors of class I and II histone deacetylases
-
Kyrylenko S, Kyrylenko O, Suuronen T, Salminen A, (2003) Differential regulation of the Sir2 histone deacetylase gene family by inhibitors of class I and II histone deacetylases. Cellular and molecular life sciences: CMLS 60: 1990-1997.
-
(2003)
Cellular and Molecular Life Sciences: CMLS
, vol.60
, pp. 1990-1997
-
-
Kyrylenko, S.1
Kyrylenko, O.2
Suuronen, T.3
Salminen, A.4
-
33
-
-
0021802841
-
Fused transcript of abl and bcr genes in chronic myelogenous leukaemia
-
Shtivelman E, Lifshitz B, Gale RP, Canaani E, (1985) Fused transcript of abl and bcr genes in chronic myelogenous leukaemia. Nature 315: 550-554.
-
(1985)
Nature
, vol.315
, pp. 550-554
-
-
Shtivelman, E.1
Lifshitz, B.2
Gale, R.P.3
Canaani, E.4
-
34
-
-
30044431810
-
Transcription-mediated gene fusion in the human genome
-
Akiva P, Toporik A, Edelheit S, Peretz Y, Diber A, et al. (2006) Transcription-mediated gene fusion in the human genome. Genome research 16: 30-36.
-
(2006)
Genome Research
, vol.16
, pp. 30-36
-
-
Akiva, P.1
Toporik, A.2
Edelheit, S.3
Peretz, Y.4
Diber, A.5
-
35
-
-
30044445670
-
Tandem chimerism as a means to increase protein complexity in the human genome
-
Parra G, Reymond A, Dabbouseh N, Dermitzakis ET, Castelo R, et al. (2006) Tandem chimerism as a means to increase protein complexity in the human genome. Genome research 16: 37-44.
-
(2006)
Genome Research
, vol.16
, pp. 37-44
-
-
Parra, G.1
Reymond, A.2
Dabbouseh, N.3
Dermitzakis, E.T.4
Castelo, R.5
-
36
-
-
78149432714
-
Expression of conjoined genes: another mechanism for gene regulation in eukaryotes
-
Prakash T, Sharma VK, Adati N, Ozawa R, Kumar N, et al. (2010) Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. PloS one 5: e13284.
-
(2010)
PloS One
, vol.5
-
-
Prakash, T.1
Sharma, V.K.2
Adati, N.3
Ozawa, R.4
Kumar, N.5
-
37
-
-
79954483082
-
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs
-
Kinsella M, Harismendy O, Nakano M, Frazer KA, Bafna V, (2011) Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. Bioinformatics 27: 1068-1075.
-
(2011)
Bioinformatics
, vol.27
, pp. 1068-1075
-
-
Kinsella, M.1
Harismendy, O.2
Nakano, M.3
Frazer, K.A.4
Bafna, V.5
-
38
-
-
77958159538
-
Prohibitin as an oxidative stress biomarker in the eye
-
Lee H, Arnouk H, Sripathi S, Chen P, Zhang R, et al. (2010) Prohibitin as an oxidative stress biomarker in the eye. International journal of biological macromolecules 47: 685-690.
-
(2010)
International Journal of Biological Macromolecules
, vol.47
, pp. 685-690
-
-
Lee, H.1
Arnouk, H.2
Sripathi, S.3
Chen, P.4
Zhang, R.5
-
39
-
-
2442490690
-
Androgens target prohibitin to regulate proliferation of prostate cancer cells
-
Gamble SC, Odontiadis M, Waxman J, Westbrook JA, Dunn MJ, et al. (2004) Androgens target prohibitin to regulate proliferation of prostate cancer cells. Oncogene 23: 2996-3004.
-
(2004)
Oncogene
, vol.23
, pp. 2996-3004
-
-
Gamble, S.C.1
Odontiadis, M.2
Waxman, J.3
Westbrook, J.A.4
Dunn, M.J.5
-
40
-
-
0029917665
-
The 3′ untranslated region of prohibitin and cellular immortalization
-
Jupe ER, Liu XT, Kiehlbauch JL, McClung JK, Dell'Orco RT, (1996) The 3′ untranslated region of prohibitin and cellular immortalization. Experimental cell research 224: 128-135.
-
(1996)
Experimental Cell Research
, vol.224
, pp. 128-135
-
-
Jupe, E.R.1
Liu, X.T.2
Kiehlbauch, J.L.3
McClung, J.K.4
Dell'Orco, R.T.5
-
41
-
-
84862248401
-
Cytoskeleton remodeling and alterations in smooth muscle contractility in the bovine jejunum during nematode infection
-
Li RW, Schroeder SG, (2011) Cytoskeleton remodeling and alterations in smooth muscle contractility in the bovine jejunum during nematode infection. Functional & integrative genomics.
-
(2011)
Functional & Integrative Genomics
-
-
Li, R.W.1
Schroeder, S.G.2
-
42
-
-
77957151956
-
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
-
Cox MP, Peterson DA, Biggs PJ, (2010) SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC bioinformatics 11: 485.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 485
-
-
Cox, M.P.1
Peterson, D.A.2
Biggs, P.J.3
-
43
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
44
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature biotechnology 28: 511-515.
-
(2010)
Nature Biotechnology
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
-
45
-
-
84863393213
-
Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle
-
Li RW, Rinaldi M, Capuco AV, (2011) Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle. Veterinary research 42: 114.
-
(2011)
Veterinary Research
, vol.42
, pp. 114
-
-
Li, R.W.1
Rinaldi, M.2
Capuco, A.V.3
|