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Volumn 40, Issue D1, 2012, Pages

Comparative interactomics with Funcoup 2.0

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; CHICKEN; COMPARATIVE STUDY; CONTROLLED STUDY; DOG; FUNCOUP DATABASE; FUNCTIONAL GENOMICS; GENE INTERACTION; GENETIC ASSOCIATION; GENETIC CODE; GENETIC DATABASE; HIGH THROUGHPUT SCREENING; HUMAN; METHODOLOGY; MOLECULAR MECHANICS; NONHUMAN; ORTHOLOGY; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION; ZEBRA FISH;

EID: 84862185886     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1062     Document Type: Article
Times cited : (42)

References (25)
  • 1
    • 65349085291 scopus 로고    scopus 로고
    • Global networks of functional coupling in eukaryotes from comprehensive data integration
    • Alexeyenko,A. and Sonnhammer,E.L.L. (2009) Global networks of functional coupling in eukaryotes from comprehensive data integration. Genome Res., 19, 1107-1116.
    • (2009) Genome Res. , vol.19 , pp. 1107-1116
    • Alexeyenko, A.1    Sonnhammer, E.L.L.2
  • 3
    • 54449083188 scopus 로고    scopus 로고
    • Browsing multidimensional molecular networks with the generic network browser (N-Browse)
    • Chapter 9, Unit 9.11
    • Kao,H.-L. and Gunsalus,K.C. (2008) Browsing multidimensional molecular networks with the generic network browser (N-Browse). Current Protoc. Bioinform., Chapter 9, Unit 9.11.
    • (2008) Current Protoc. Bioinform.
    • Kao, H.-L.1    Gunsalus, K.C.2
  • 4
    • 58149194611 scopus 로고    scopus 로고
    • ConsensusPathDB-a database for integrating human functional interaction networks
    • Kamburov,A., Wierling,C., Lehrach,H. and Herwig,R. (2009) ConsensusPathDB-a database for integrating human functional interaction networks. Nucleic Acids Res., 37, D623-D628.
    • (2009) Nucleic Acids Res. , vol.37
    • Kamburov, A.1    Wierling, C.2    Lehrach, H.3    Herwig, R.4
  • 5
    • 75249101080 scopus 로고    scopus 로고
    • Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D
    • Niu,Y., Otasek,D. and Jurisica,I. (2010) Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D. Bioinformatics, 26, 111-119.
    • (2010) Bioinformatics , vol.26 , pp. 111-119
    • Niu, Y.1    Otasek, D.2    Jurisica, I.3
  • 8
    • 33747853260 scopus 로고    scopus 로고
    • APID: Agile protein interaction DataAnalyzer
    • DOI 10.1093/nar/gkl128
    • Prieto,C. and De Las Rivas,J. (2006) APID: Agile Protein Interaction DataAnalyzer. Nucleic Acids Res., 34, W298-W302. (Pubitemid 44529782)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Prieto, C.1    De Las, R.J.2
  • 9
    • 67849122322 scopus 로고    scopus 로고
    • VisANT 3.5: Multi-scale network visualization, analysis and inference based on the gene ontology
    • Hu,Z., Hung,J.-H., Wang,Y., Chang,Y.-C., Huang,C.-L., Huyck,M. and DeLisi,C. (2009) VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Res., 37, W115-121.
    • (2009) Nucleic Acids Res. , vol.37
    • Hu, Z.1    Hung, J.-H.2    Wang, Y.3    Chang, Y.-C.4    Huang, C.-L.5    Huyck, M.6    DeLisi, C.7
  • 11
    • 45449115550 scopus 로고    scopus 로고
    • jSquid: A Java applet for graphical on-line network exploration
    • DOI 10.1093/bioinformatics/btn213
    • Klammer,M., Roopra,S. and Sonnhammer,E.L.L. (2008) jSquid: a Java applet for graphical on-line network exploration. Bioinformatics, 24, 1467-1468. (Pubitemid 351851005)
    • (2008) Bioinformatics , vol.24 , Issue.12 , pp. 1467-1468
    • Klammer, M.1    Roopra, S.2    Sonnhammer, E.L.L.3
  • 12
    • 39149087720 scopus 로고    scopus 로고
    • NetworkBLAST: Comparative analysis of protein networks
    • DOI 10.1093/bioinformatics/btm630
    • Kalaev,M., Smoot,M., Ideker,T. and Sharan,R. (2008) NetworkBLAST: comparative analysis of protein networks. Bioinformatics, 24, 594-596. (Pubitemid 351256310)
    • (2008) Bioinformatics , vol.24 , Issue.4 , pp. 594-596
    • Kalaev, M.1    Smoot, M.2    Ideker, T.3    Sharan, R.4
  • 13
    • 66349108229 scopus 로고    scopus 로고
    • IsoRankN: Spectral methods for global alignment of multiple protein networks
    • Liao,C.-S., Lu,K., Baym,M., Singh,R. and Berger,B. (2009) IsoRankN: spectral methods for global alignment of multiple protein networks. Bioinformatics, 25, i253-i258.
    • (2009) Bioinformatics , vol.25
    • Liao, C.-S.1    Lu, K.2    Baym, M.3    Singh, R.4    Berger, B.5
  • 14
    • 33748257786 scopus 로고    scopus 로고
    • Graemlin: General and robust alignment of multiple large interaction networks
    • DOI 10.1101/gr.5235706
    • Flannick,J., Novak,A., Srinivasan,B.S., McAdams,H.H. and Batzoglou,S. (2006) Graemlin: general and robust alignment of multiple large interaction networks. Genome Res., 16, 1169-1181. (Pubitemid 44320404)
    • (2006) Genome Research , vol.16 , Issue.9 , pp. 1169-1181
    • Flannick, J.1    Novak, A.2    Srinivasan, B.S.3    McAdams, H.H.4    Batzoglou, S.5
  • 15
    • 78651512420 scopus 로고    scopus 로고
    • GraphCrunch 2: Software tool for network modeling, alignment and clustering
    • Kuchaiev,O., Stevanović, A., Hayes,W. and Pržulj,N. (2011) GraphCrunch 2: software tool for network modeling, alignment and clustering. BMC Bioinform., 12, 24.
    • (2011) BMC Bioinform. , vol.12 , pp. 24
    • Kuchaiev, O.1    Stevanović, A.2    Hayes, W.3    Pržulj, N.4
  • 17
    • 70449368351 scopus 로고    scopus 로고
    • Comparative analysis and unification of domain-domain interaction networks
    • Björkholm,P. and Sonnhammer,E.L.L. (2009) Comparative analysis and unification of domain-domain interaction networks. Bioinformatics, 25, 3020-3025.
    • (2009) Bioinformatics , vol.25 , pp. 3020-3025
    • Björkholm, P.1    Sonnhammer, E.L.L.2
  • 18
    • 78649765617 scopus 로고    scopus 로고
    • Gerontome: A web-based database server for aging-related genes and analysis pipelines
    • Kwon,J., Lee,B. and Chung,H. (2010) Gerontome: a web-based database server for aging-related genes and analysis pipelines. BMC Genomics, 11(Suppl. 4), S20.
    • (2010) BMC Genomics , vol.11 , Issue.SUPPL. 4
    • Kwon, J.1    Lee, B.2    Chung, H.3
  • 19
    • 77955277941 scopus 로고    scopus 로고
    • A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways
    • Fensgård,Ø., Kassahun,H., Bombik,I., Rognes,T., Lindvall,J.M. and Nilsen,H. (2010) A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways. Aging, 2, 133-159.
    • (2010) Aging , vol.2 , pp. 133-159
    • Fensgård, Ø.1    Kassahun, H.2    Bombik, I.3    Rognes, T.4    Lindvall, J.M.5    Nilsen, H.6
  • 20
    • 74549201560 scopus 로고    scopus 로고
    • Global transcriptional response after exposure of fission yeast cells to ultraviolet light
    • Skjølberg,H.C., Fensgård,O., Nilsen,H., Grallert,B. and Boye,E. (2009) Global transcriptional response after exposure of fission yeast cells to ultraviolet light. BMC Cell Biol., 10, 87.
    • (2009) BMC Cell Biol. , vol.10 , pp. 87
    • Skjølberg, H.C.1    Fensgård, O.2    Nilsen, H.3    Grallert, B.4    Boye, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.