Golgi and related vesicle proteomics: Simplify to identify

Cold Spring Harbor Perspectives in Biology

Volumn 3, Issue 12, 2011, Pages

  Gannon, Joan ^a   Bergeron, John J M ^a   Nilsson, Tommy ^a  

^a RESEARCH INSTITUTE OF THE MCGILL UNIVERSITY HEALTH CENTRE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

VESICULAR TRANSPORT PROTEIN;

CHEMISTRY; COATED VESICLE; GOLGI COMPLEX; METABOLISM; METHODOLOGY; PHYSIOLOGY; PROTEOMICS; REVIEW; TRANSPORT AT THE CELLULAR LEVEL; ULTRASTRUCTURE;

BIOLOGICAL TRANSPORT; COP-COATED VESICLES; GOLGI APPARATUS; PROTEOMICS; VESICULAR TRANSPORT PROTEINS;

EID: 84862118310     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a005421     Document Type: Article

References (63)

1. Anelli T, Alessio M, Mezghrani A, Simmen T, Talamo F, Bachi A, Sitia R. 2002. ERp44, a novel endoplasmic reticulum folding assistant of the thioredoxin family. EMBO J 21: 835-844.
2. Anelli T, Alessio M, Bachi A, Bergamelli L, Bertoli G, Camerini S, Mezghrani A, Ruffato E, Simmen T, Sitia R. 2003. Thiol-mediated protein retention in the endoplasmic reticulum: The role of ERp44. EMBO J 22: 5015-5022.
3. Barlowe C, Orci L, Yeung T, Hosobuchi M, Hamamoto S, Salama N, Rexach MF, Ravazzola M, Amherdt M, Schekman R. 1994. COPII: A membrane coat formed by Sec proteins that drive vesicle budding from the endoplasmic reticulum. Cell 77: 895-907.
4. Bell AW, Ward MA, Blackstock WP, Freeman HN, Choudhary JS, Lewis AP, Chotai D, Fazel A, Gushue JN, Paiement J, et al. 2001. Proteomics characterization of abundant Golgi membrane proteins. J Biol Chem 276: 5152-5165.
5. Bell AW, Nilsson T, Kearney RE, Bergeron JJ. 2007. The protein microscope: Incorporating mass spectrometry into cell biology. Nature methods 4: 783-784.
6. Bergeron JJ, Au CE, Desjardins M, McPherson PS, Nilsson T. 2010. Cell biology through proteomics-ad astra per alia porci. Trends Cell Biol 20: 337-345.
7. Bertoli G, Simmen T, Anelli T, Molteni SN, Fesce R, Sitia R. 2004. Two conserved cysteine triads in human Ero1α cooperate for efficient disulfide bond formation in the endoplasmic reticulum. J Biol Chem 279: 30047-30052.
8. Chevet E, Smirle J, Cameron PH, Thomas DY, Bergeron JJ. 2010. Calnexin phosphorylation: Linking cytoplasmic signalling to endoplasmic reticulum lumenal functions. Semin Cell Dev Biol 21: 486-490.
9. Corbacho I, Olivero I, Hernandez LM. 2010. Identification of the MNN3 gene of Saccharomyces cerevisiae. Glycobiology 20: 1336-1340.
10. Cosson P, Letourneur F. 1994. Coatomer interaction with di-lysine endoplasmic reticulum retention motifs. Science 263: 1629-1631.
11. Cosson P, Amherdt M, Rothman JE, Orci L. 2002. A resident Golgi protein is excluded fromperi-Golgi vesicles inNRK cells. Proc Natl Acad Sci 99: 12831-12834.
12. Dahan S, Ahluwalia JP, Wong L, Posner BI, Bergeron JJ. 1994. Concentration of intracellular hepatic apolipoprotein E in Golgi apparatus saccular distensions and endosomes. J Cell Biol 127: 1859-1869.
13. De Duve C. 1964. Principles of tissue fractionation. J Theoret Biol 6: 33-59.
14. Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY. 2010. Organization of the Sec61 translocon, studied by high resolution native electrophoresis. J Proteome Res 9: 1763-1771.
15. Dierks T, Schlotawa L, Frese MA, Radhakrishnan K, von Figura K, Schmidt B. 2009. Molecular basis of multiple sulfatase deficiency, mucolipidosis II/III and Niemann-Pick C1 disease-Lysosomal storage disorders caused by defects of non-lysosomal proteins. Biochim Biophys Acta 1793: 710-725.
16. Dippold HC, Ng MM, Farber-Katz SE, Lee SK, Kerr ML, Peterman MC, Sim R, Wiharto PA, Galbraith KA, Madhavarapu S, et al. 2009. GOLPH3 bridges phosphatidylinositol-4-phosphate and actomyosin to stretch and shape the Golgi to promote budding. Cell 139: 337-351.
17. Dunphy WG, Brands R, Rothman JE. 1985. Attachment of terminal N-acetylglucosamine to asparagine-linked oligosaccharides occurs in central cisternae of the Golgi stack. Cell 40: 463-472.
18. Dupuy AD, Engelman DM. 2008. Protein area occupancy at the center of the red blood cell membrane. ProcNatl Acad Sci 105: 2848-2852.
19. Fraldi A, Zito E, Annunziata F, Lombardi A, Cozzolino M, Monti M, Spampanato C, Ballabio A, Pucci P, Sitia R, et al. 2008. Multistep, sequential control of the trafficking and function of the multiple sulfatase deficiency gene product, SUMF1 by PDI, ERGIC-53 and ERp44. Hum Mol Genet 17: 2610-2621.
20. Gilchrist A, Au CE, Hiding J, Bell AW, Fernandez-Rodriguez J, Lesimple S, Nagaya H, Roy L, Gosline SJ, Hallett M, et al. 2006. Quantitative proteomics analysis of the secretory pathway. Cell 127: 1265-1281.
21. Girod A, Storrie B, Simpson JC, Johannes L, Goud B, Roberts LM, Lord JM, Nilsson T, Pepperkok R. 1999. Evidence for a COP-I-independent transport route from the Golgi complex to the endoplasmic reticulum. Nat Cell Biol 1: 423-430.
22. Grabenbauer M, Geerts WJ, Fernadez-Rodriguez J, Hoenger A, Koster AJ, Nilsson T. 2005. Correlative microscopy and electron tomography of GFP through photooxidation. Nat Method 2: 857-862.
23. Grasse PP. 1957. Ultrastructure, polarity and reproduction of Golgi apparatus. CR Hebd Seances Acad Sci 245: 1278-1281.
24. Jamieson JD, Palade GE. 1967. Intracellular transport of secretory proteins in the pancreatic exocrine cell. I. Role of the peripheral elements of the Golgi complex. J Cell Biol 34: 577-596.
25. Jamieson JD, Palade GE. 1968. Intracellular transport of secretory proteins in the pancreatic exocrine cell. 3. Dissociation of intracellular transport from protein synthesis. J Cell Biol 39: 580-588.
26. Kweon HS, Beznoussenko GV, Micaroni M, Polishchuk RS, Trucco A, Martella O, Di Giandomenico D, Marra P, Fusella A, Di Pentima A, et al. 2004. Golgi enzymes are enriched in perforated zones of golgi cisternae but are depleted in COPI vesicles. Mol Biol Cell 15: 4710-4724.
27. Lanoix J, Ouwendijk J, Lin CC, Stark A, Love HD, Ostermann J, Nilsson T. 1999. GTP hydrolysis by arf-1 mediates sorting and concentration of Golgi resident enzymes into functional COP I vesicles. EMBO J 18: 4935-4948.
28. Lanoix J, Ouwendijk J, Stark A, Szafer E, Cassel D, Dejgaard K, Weiss M, Nilsson T. 2001. Sorting of Golgi resident proteins into different subpopulations of COPI vesicles: A role for ArfGAP1. J Cell Biol 155: 1199-1212.
29. Letourneur F, Gaynor EC, Hennecke S, Demolliere C, Duden R, Emr SD, Riezman H, Cosson P. 1994. Coatomer is essential for retrieval of dilysine-tagged proteins to the endoplasmic reticulum. Cell 79: 1199-1207.
30. Lin CC, Love HD, Gushue JN, Bergeron JJ, Ostermann J. 1999. ER/Golgi intermediates acquire Golgi enzymes by brefeldin A-sensitive retrograde transport in vitro. J Cell Biol 147: 1457-1472.
31. Long Q, Lei T, Feng B, Yin C, Jin D, Wu Y, Zhu X, Chen X, Gan L, Yang Z. 2010. Peroxisome proliferator-activated receptor-g increases adiponectin secretion via transcriptional repression of endoplasmic reticulum chaperone protein ERp44. Endocrinology 151: 3195-3203.
32. Love HD, Lin CC, Short CS, Ostermann J. 1998. Isolation of functional Golgi-derived vesicles with a possible role in retrograde transport. J Cell Biol 140: 541-551.
33. Malsam J, Satoh A, Pelletier L, Warren G. 2005. Golgin tethers define subpopulations of COPI vesicles. Science 307: 1095-1098.
34. Mariappan M, Radhakrishnan K, Dierks T, Schmidt B, von Figura K. 2008. ERp44 mediates a thiol-independent retention of formylglycine-generating enzyme in the endoplasmic reticulum. J Biol Chem 283: 6375-6383.
35. Martinez-Menarguez JA, Geuze HJ, Slot JW, Klumperman J. 1999. Vesicular tubular clusters between the ER and Golgi mediate concentration of soluble secretory proteins by exclusion from COPI-coated vesicles. Cell 98: 81-90.
36. Martinez-Menarguez JA, Prekeris R, Oorschot VM, Scheller R, Slot JW, Geuze HJ, Klumperman J. 2001. Peri-Golgi vesicles contain retrograde but not anterograde proteins consistent with the cisternal progression model of intra-Golgi transport. J Cell Biol 155: 1213-1224.
37. Miesenbock G, Rothman JE. 1995. The capacity to retrieve escaped ER proteins extends to the trans-most cisterna of the Golgi stack. J Cell Biol 129: 309-319.
38. Munro S, Pelham HR. 1987. A C-terminal signal prevents secretion of luminal ER proteins. Cell 48: 899-907.
39. Nilsson T, Jackson M, Peterson PA. 1989. Short cytoplasmic sequences serve as retention signals for transmembrane proteins in the endoplasmic reticulum. Cell 58: 707-718.
40. Nilsson T, Pypaert M, Hoe MH, Slusarewicz P, Berger EG, Warren G. 1993. Overlapping distribution of two glycosyltransferases in the Golgi apparatus of HeLa cells. J Cell Biol 120: 5-13.
41. Nilsson T, Au CE, Bergeron JJ. 2009. Sorting out glycosylation enzymes in the Golgi apparatus. FEBS Lett 583: 3764-3769.
42. Nilsson T, Mann M, Aebersold R, Yates JR III, Bairoch A, Bergeron JJ. 2010. Mass spectrometry in high-throughput proteomics: Ready for the big time. Nat Method 7: 681-685.
43. Novick P, Ferro S, Schekman R. 1981. Order of events in the yeast secretory pathway. Cell 25: 461-469.
44. Orci L, Glick BS, Rothman JE. 1986. A new type of coated vesicular carrier that appears not to contain clathrin: Its possible role in protein transport within the Golgi stack. Cell 46: 171-184.
45. Pelham HR, Rothman JE. 2000. The debate about transport in the Golgi-two sides of the same coin? Cell 102: 713-719.
46. Phillips SA, Kung J, Ciaraldi TP, Choe C, Christiansen L, Mudaliar S, Henry RR. 2009. Selective regulation of cellular and secreted multimeric adiponectin by antidiabetic therapies in humans. Am J Physiol Endocrinol Metab 297: E767-E773.
47. Qiang L, Wang H, Farmer SR. 2007. Adiponectin secretion is regulated by SIRT1 and the endoplasmic reticulum oxidoreductase Ero1-L α. Mol Cell Biol 27: 4698-4707.
48. Quinn P, Griffiths G, Warren G. 1984. Density of newly synthesized plasma membrane proteins in intracellular membranes II. Biochemical studies. J Cell Biol 98: 2142-2147.
49. Rabouille C, Hui N, Hunte F, Kieckbusch R, Berger EG, Warren G, Nilsson T. 1995. Mapping the distribution of Golgi enzymes involved in the construction of complex oligosaccharides. J Cell Sci 108: 1617-1627.
50. Roth J, Berger EG. 1982. Immunocytochemical localization of galactosyltransferase in HeLa cells: Codistribution with thiamine pyrophosphatase in trans-Golgi cisternae. J Cell Biol 93: 223-229.
51. Rothman JE, Fine RE. 1980. Coated vesicles transport newly synthesized membrane glycoproteins from endoplasmic reticulum to plasma membrane in two successive stages. Proc Natl Acad Sci 77: 780-784.
52. Saraste J, Kuismanen E. 1992. Pathways of protein sorting and membrane traffic between the rough endoplasmic reticulum and the Golgi complex. Seminars Cell Biol 3: 343-355.
53. Schmitz KR, Liu J, Li S, Setty TG, Wood CS, Burd CG, Ferguson KM. 2008. Golgi localization of glycosyltransferases requires a Vps74p oligomer. Dev Cell 14: 523-534.
54. Schrag JD, Procopio DO, Cygler M, Thomas DY, Bergeron JJ. 2003. Lectin control of protein folding and sorting in the secretory pathway. Trends Biochem Sci 28: 49-57.
55. Scott KL, Kabbarah O, Liang MC, Ivanova E, Anagnostou V, Wu J, Dhakal S, Wu M, Chen S, Feinberg T, et al. 2009. GOLPH3 modulates mTOR signalling and rapamycin sensitivity in cancer. Nature 459: 1085-1090.
56. Takamori S, Holt M, Stenius K, Lemke EA, Gronborg M, Riedel D, Urlaub H, Schenck S, Brugger B, Ringler P, et al. 2006. Molecular anatomy of a trafficking organelle. Cell 127: 831-846.
57. Tateishi Y, Hattori M, Nakayama T, Iwai M, Bannai H, Nakamura T, Michikawa T, Inoue T, Mikoshiba K. 2005. Cluster formation of inositol 1,4,5-trisphosphate receptor requires its transition to open state. J Biol Chem 280: 6816-6822.
58. Tu L, Tai WC, Chen L, Banfield DK. 2008. Signal-mediated dynamic retention of glycosyltransferases in the Golgi. Science 321: 404-407.
59. Wang ZV, Schraw TD, Kim JY, Khan T, Rajala MW, Follenzi A, Scherer PE. 2007. Secretion of the adipocyte-specific secretory protein adiponectin critically depends on thiol-mediated protein retention. Mol Cell Biol 27: 3716-3731.
60. Wang Y, Lam KS, Yau MH, Xu A. 2008. Post-translational modifications of adiponectin: Mechanisms and functional implications. Biochem J 409: 623-633.
61. Wolf G. 2008. New insights into thiol-mediated regulation of adiponectin secretion. Nutr Rev 66: 642-645.
62. Wood CS, Schmitz KR, Bessman NJ, Setty TG, Ferguson KM, Burd CG. 2009. PtdIns4P recognition by Vps74/GOLPH3 links PtdIns 4-kinase signaling to retrograde Golgi trafficking. J Cell Biol 187: 967-975.
63. Wu CC, Taylor RS, Lane DR, Ladinsky MS, Weisz JA, Howell KE. 2000. GMx33: A novel family of trans-Golgi proteins identified by proteomics. Traffic 1: 963-975.