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Volumn 7, Issue 5, 2012, Pages

An improved PSO algorithm for generating protective SNP barcodes in breast cancer

Author keywords

[No Author keywords available]

Indexed keywords

STEROID HORMONE; SEX HORMONE;

EID: 84862059143     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037018     Document Type: Article
Times cited : (50)

References (33)
  • 1
    • 78049501006 scopus 로고    scopus 로고
    • A genome-wide association scan on estrogen receptor-negative breast cancer
    • Li J, Humphreys K, Darabi H, Rosin G, Hannelius U, et al. (2010) A genome-wide association scan on estrogen receptor-negative breast cancer. Breast Cancer Res 12: R93.
    • (2010) Breast Cancer Res , vol.12
    • Li, J.1    Humphreys, K.2    Darabi, H.3    Rosin, G.4    Hannelius, U.5
  • 2
    • 77957549881 scopus 로고    scopus 로고
    • GWAS identifies a common breast cancer risk allele among BRCA1 carriers
    • Kraft P, Haiman CA, (2010) GWAS identifies a common breast cancer risk allele among BRCA1 carriers. Nat Genet 42: 819-820.
    • (2010) Nat Genet , vol.42 , pp. 819-820
    • Kraft, P.1    Haiman, C.A.2
  • 3
    • 67349158067 scopus 로고    scopus 로고
    • A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1)
    • Thomas G, Jacobs KB, Kraft P, Yeager M, Wacholder S, et al. (2009) A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1). Nat Genet 41: 579-584.
    • (2009) Nat Genet , vol.41 , pp. 579-584
    • Thomas, G.1    Jacobs, K.B.2    Kraft, P.3    Yeager, M.4    Wacholder, S.5
  • 4
    • 67649173335 scopus 로고    scopus 로고
    • Identification of novel susceptibility genes for breast cancer - Genome-wide association studies or evaluation of candidate genes?
    • Meindl A, (2009) Identification of novel susceptibility genes for breast cancer- Genome-wide association studies or evaluation of candidate genes? Breast Care (Basel) 4: 93-99.
    • (2009) Breast Care (Basel) , vol.4 , pp. 93-99
    • Meindl, A.1
  • 5
    • 84860290615 scopus 로고    scopus 로고
    • Breast cancer genome-wide association studies: there is strength in numbers
    • Fanale D, Amodeo V, Corsini LR, Rizzo S, Bazan V, et al. (2012) Breast cancer genome-wide association studies: there is strength in numbers. Oncogene 31: 2121-2128.
    • (2012) Oncogene , vol.31 , pp. 2121-2128
    • Fanale, D.1    Amodeo, V.2    Corsini, L.R.3    Rizzo, S.4    Bazan, V.5
  • 6
    • 84860390348 scopus 로고    scopus 로고
    • Genetic variation in the genome-wide predicted estrogen response element-related sequences is associated with breast cancer development
    • Yu JC, Hsiung CN, Hsu HM, Bao BY, Chen ST, et al. (2011) Genetic variation in the genome-wide predicted estrogen response element-related sequences is associated with breast cancer development. Breast Cancer Res 13: R13.
    • (2011) Breast Cancer Res , vol.13
    • Yu, J.C.1    Hsiung, C.N.2    Hsu, H.M.3    Bao, B.Y.4    Chen, S.T.5
  • 7
    • 0035930138 scopus 로고    scopus 로고
    • The two faces of janus: sex steroids as mediators of both cell proliferation and cell death
    • Soto AM, Sonnenschein C, (2001) The two faces of janus: sex steroids as mediators of both cell proliferation and cell death. J Natl Cancer Inst 93: 1673-1675.
    • (2001) J Natl Cancer Inst , vol.93 , pp. 1673-1675
    • Soto, A.M.1    Sonnenschein, C.2
  • 8
    • 44549087499 scopus 로고    scopus 로고
    • Sex-steroid hormones and EGF signalling in breast and prostate cancer cells: targeting the association of Src with steroid receptors
    • Auricchio F, Migliaccio A, Castoria G, (2008) Sex-steroid hormones and EGF signalling in breast and prostate cancer cells: targeting the association of Src with steroid receptors. Steroids 73: 880-884.
    • (2008) Steroids , vol.73 , pp. 880-884
    • Auricchio, F.1    Migliaccio, A.2    Castoria, G.3
  • 10
    • 79959715529 scopus 로고    scopus 로고
    • Targeting rapid action of sex steroid receptors in breast and prostate cancers
    • Giovannelli P, Di Donato M, Giraldi T, Migliaccio A, Castoria G, et al. (2011) Targeting rapid action of sex steroid receptors in breast and prostate cancers. Front Biosci 17: 2224-2232.
    • (2011) Front Biosci , vol.17 , pp. 2224-2232
    • Giovannelli, P.1    Di Donato, M.2    Giraldi, T.3    Migliaccio, A.4    Castoria, G.5
  • 11
    • 77953090173 scopus 로고    scopus 로고
    • Novel roles of prolactin and estrogens in breast cancer: resistance to chemotherapy
    • LaPensee EW, Ben-Jonathan N, (2010) Novel roles of prolactin and estrogens in breast cancer: resistance to chemotherapy. Endocr Relat Cancer 17: R91-107.
    • (2010) Endocr Relat Cancer , vol.17 , pp. 91-107
    • LaPensee, E.W.1    Ben-Jonathan, N.2
  • 13
    • 70350702803 scopus 로고    scopus 로고
    • Common germline polymorphisms in COMT, CYP19A1, ESR1, PGR, SULT1E1 and STS and survival after a diagnosis of breast cancer
    • Udler MS, Azzato EM, Healey CS, Ahmed S, Pooley KA, et al. (2009) Common germline polymorphisms in COMT, CYP19A1, ESR1, PGR, SULT1E1 and STS and survival after a diagnosis of breast cancer. Int J Cancer 125: 2687-2696.
    • (2009) Int J Cancer , vol.125 , pp. 2687-2696
    • Udler, M.S.1    Azzato, E.M.2    Healey, C.S.3    Ahmed, S.4    Pooley, K.A.5
  • 14
    • 34047201701 scopus 로고    scopus 로고
    • Association between common variation in 120 candidate genes and breast cancer risk
    • Pharoah PD, Tyrer J, Dunning AM, Easton DF, Ponder BA, (2007) Association between common variation in 120 candidate genes and breast cancer risk. PLoS Genet 3: e42.
    • (2007) PLoS Genet , vol.3
    • Pharoah, P.D.1    Tyrer, J.2    Dunning, A.M.3    Easton, D.F.4    Ponder, B.A.5
  • 15
    • 33846637325 scopus 로고    scopus 로고
    • Phytoestrogen exposure, polymorphisms in COMT, CYP19, ESR1, and SHBG genes, and their associations with prostate cancer risk
    • Low YL, Taylor JI, Grace PB, Mulligan AA, Welch AA, et al. (2006) Phytoestrogen exposure, polymorphisms in COMT, CYP19, ESR1, and SHBG genes, and their associations with prostate cancer risk. Nutr Cancer 56: 31-39.
    • (2006) Nutr Cancer , vol.56 , pp. 31-39
    • Low, Y.L.1    Taylor, J.I.2    Grace, P.B.3    Mulligan, A.A.4    Welch, A.A.5
  • 16
    • 40049098166 scopus 로고    scopus 로고
    • Cumulative association of five genetic variants with prostate cancer
    • Zheng SL, Sun J, Wiklund F, Smith S, Stattin P, et al. (2008) Cumulative association of five genetic variants with prostate cancer. N Engl J Med 358: 910-919.
    • (2008) N Engl J Med , vol.358 , pp. 910-919
    • Zheng, S.L.1    Sun, J.2    Wiklund, F.3    Smith, S.4    Stattin, P.5
  • 17
    • 42149086090 scopus 로고    scopus 로고
    • Combinational polymorphisms of four DNA repair genes XRCC1, XRCC2, XRCC3, and XRCC4 and their association with oral cancer in Taiwan
    • Yen CY, Liu SY, Chen CH, Tseng HF, Chuang LY, et al. (2008) Combinational polymorphisms of four DNA repair genes XRCC1, XRCC2, XRCC3, and XRCC4 and their association with oral cancer in Taiwan. J Oral Pathol Med 37: 271-277.
    • (2008) J Oral Pathol Med , vol.37 , pp. 271-277
    • Yen, C.Y.1    Liu, S.Y.2    Chen, C.H.3    Tseng, H.F.4    Chuang, L.Y.5
  • 18
    • 40349090639 scopus 로고    scopus 로고
    • SNP combinations in chromosome-wide genes are associated with bone mineral density in Taiwanese women
    • Lin GT, Tseng HF, Chang CK, Chuang LY, Liu CS, et al. (2008) SNP combinations in chromosome-wide genes are associated with bone mineral density in Taiwanese women. Chinese Journal of Physiology 91: 1-10.
    • (2008) Chinese Journal of Physiology , vol.91 , pp. 1-10
    • Lin, G.T.1    Tseng, H.F.2    Chang, C.K.3    Chuang, L.Y.4    Liu, C.S.5
  • 19
    • 47749124258 scopus 로고    scopus 로고
    • Post genome-wide association studies of novel genes associated with type 2 diabetes show gene-gene interaction and high predictive value
    • Cauchi S, Meyre D, Durand E, Proenca C, Marre M, et al. (2008) Post genome-wide association studies of novel genes associated with type 2 diabetes show gene-gene interaction and high predictive value. PLoS ONE 3: e2031.
    • (2008) PLoS ONE , vol.3
    • Cauchi, S.1    Meyre, D.2    Durand, E.3    Proenca, C.4    Marre, M.5
  • 21
    • 80053591338 scopus 로고    scopus 로고
    • Genetic variants in TGF-beta pathway are associated with ovarian cancer risk
    • Yin J, Lu K, Lin J, Wu L, Hildebrandt MA, et al. (2011) Genetic variants in TGF-beta pathway are associated with ovarian cancer risk. PLoS ONE 6: e25559.
    • (2011) PLoS ONE , vol.6
    • Yin, J.1    Lu, K.2    Lin, J.3    Wu, L.4    Hildebrandt, M.A.5
  • 22
    • 80052450814 scopus 로고    scopus 로고
    • Disease gene interaction pathways: a potential framework for how disease genes associate by disease-risk modules
    • Chen L, Li W, Zhang L, Wang H, He W, et al. (2011) Disease gene interaction pathways: a potential framework for how disease genes associate by disease-risk modules. PLoS ONE 6: e24495.
    • (2011) PLoS ONE , vol.6
    • Chen, L.1    Li, W.2    Zhang, L.3    Wang, H.4    He, W.5
  • 23
    • 84856220925 scopus 로고    scopus 로고
    • SNP-SNP interactions between DNA repair genes were associated with breast cancer risk in a Korean population
    • Han W, Kim KY, Yang SJ, Noh DY, Kang D, et al. (2011) SNP-SNP interactions between DNA repair genes were associated with breast cancer risk in a Korean population. Cancer 118 (3): 594-602.
    • (2011) Cancer , vol.118 , Issue.3 , pp. 594-602
    • Han, W.1    Kim, K.Y.2    Yang, S.J.3    Noh, D.Y.4    Kang, D.5
  • 24
    • 70449398106 scopus 로고    scopus 로고
    • Association of common variants in mismatch repair genes and breast cancer susceptibility: a multigene study
    • Conde J, Silva SN, Azevedo AP, Teixeira V, Pina JE, et al. (2009) Association of common variants in mismatch repair genes and breast cancer susceptibility: a multigene study. BMC Cancer 9: 344.
    • (2009) BMC Cancer , vol.9 , pp. 344
    • Conde, J.1    Silva, S.N.2    Azevedo, A.P.3    Teixeira, V.4    Pina, J.E.5
  • 25
    • 64549155302 scopus 로고    scopus 로고
    • Combinational polymorphisms of seven CXCL12-related genes are protective against breast cancer in Taiwan
    • Lin GT, Tseng HF, Yang CH, Hou MF, Chuang LY, et al. (2009) Combinational polymorphisms of seven CXCL12-related genes are protective against breast cancer in Taiwan. OMICS 13: 165-172.
    • (2009) OMICS , vol.13 , pp. 165-172
    • Lin, G.T.1    Tseng, H.F.2    Yang, C.H.3    Hou, M.F.4    Chuang, L.Y.5
  • 26
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • Ritchie MD, Hahn LW, Roodi N, Bailey LR, Dupont WD, et al. (2001) Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am J Hum Genet 69: 138-147.
    • (2001) Am J Hum Genet , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5
  • 27
    • 33845903040 scopus 로고    scopus 로고
    • Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions
    • Chung Y, Lee SY, Elston RC, Park T, (2007) Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions. Bioinformatics 23: 71-76.
    • (2007) Bioinformatics , vol.23 , pp. 71-76
    • Chung, Y.1    Lee, S.Y.2    Elston, R.C.3    Park, T.4
  • 28
    • 42949084703 scopus 로고    scopus 로고
    • Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions
    • Mechanic LE, Luke BT, Goodman JE, Chanock SJ, Harris CC, (2008) Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions. BMC Bioinformatics 9: 146.
    • (2008) BMC Bioinformatics , vol.9 , pp. 146
    • Mechanic, L.E.1    Luke, B.T.2    Goodman, J.E.3    Chanock, S.J.4    Harris, C.C.5
  • 29
    • 39649099379 scopus 로고    scopus 로고
    • A support vector machine approach for detecting gene-gene interaction
    • Chen SH, Sun J, Dimitrov L, Turner AR, Adams TS, et al. (2008) A support vector machine approach for detecting gene-gene interaction. Genet Epidemiol 32: 152-167.
    • (2008) Genet Epidemiol , vol.32 , pp. 152-167
    • Chen, S.H.1    Sun, J.2    Dimitrov, L.3    Turner, A.R.4    Adams, T.S.5
  • 30
    • 68149144254 scopus 로고    scopus 로고
    • Novel generating protective single nucleotide polymorphism barcode for breast cancer using particle swarm optimization
    • Yang CH, Chang HW, Cheng YH, Chuang LY, (2009) Novel generating protective single nucleotide polymorphism barcode for breast cancer using particle swarm optimization. Cancer Epidemiol 33: 147-154.
    • (2009) Cancer Epidemiol , vol.33 , pp. 147-154
    • Yang, C.H.1    Chang, H.W.2    Cheng, Y.H.3    Chuang, L.Y.4
  • 31
    • 79958727313 scopus 로고    scopus 로고
    • Computational analysis of simulated SNP interactions between 26 growth factor-related genes in a breast cancer association study
    • Yang CH, Chuang LY, Chen YJ, Tseng HF, Chang HW, (2011) Computational analysis of simulated SNP interactions between 26 growth factor-related genes in a breast cancer association study. OMICS 15: 399-407.
    • (2011) OMICS , vol.15 , pp. 399-407
    • Yang, C.H.1    Chuang, L.Y.2    Chen, Y.J.3    Tseng, H.F.4    Chang, H.W.5
  • 32
    • 33845903040 scopus 로고    scopus 로고
    • Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions
    • Chung Y, Lee SY, Elston RC, Park T, (2006) Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions. Bioinformatics 23: 71.
    • (2006) Bioinformatics , vol.23 , pp. 71
    • Chung, Y.1    Lee, S.Y.2    Elston, R.C.3    Park, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.