메뉴 건너뛰기




Volumn 52, Issue 4, 2012, Pages 927-934

Searching for coordinated activity cliffs using particle swarm optimization

Author keywords

[No Author keywords available]

Indexed keywords

PARTICLE SWARM OPTIMIZATION (PSO);

EID: 84862021088     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci3000503     Document Type: Article
Times cited : (21)

References (20)
  • 1
    • 33746931581 scopus 로고    scopus 로고
    • On outliers and activity cliffs-why QSAR often disappoints
    • Maggiora, G. M. On Outliers and Activity Cliffs-Why QSAR often Disappoints. J. Chem. Inf. Model. 2006, 46, 1535-1535.
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 1535-1535
    • Maggiora, G.M.1
  • 2
    • 78649844432 scopus 로고    scopus 로고
    • Activity landscape representations for structure-activity relationship analysis
    • Wassermann, A. M.; Wawer, M.; Bajorath, J. Activity Landscape Representations for Structure-Activity Relationship Analysis. J. Med. Chem. 2010, 53, 8209-8223.
    • (2010) J. Med. Chem. , vol.53 , pp. 8209-8223
    • Wassermann, A.M.1    Wawer, M.2    Bajorath, J.3
  • 3
    • 84859179256 scopus 로고    scopus 로고
    • Exploring activity cliffs in medicinal chemistry
    • in press; DOI: 10.1021/jm201706b
    • Stumpfe, D.; Bajorath, J. Exploring Activity Cliffs in Medicinal Chemistry. J. Med. Chem. 2012, 55, in press; DOI: 10.1021/jm201706b.
    • (2012) J. Med. Chem. , vol.55
    • Stumpfe, D.1    Bajorath, J.2
  • 4
    • 79960362109 scopus 로고    scopus 로고
    • Comprehensive analysis of single-and multi-target activity cliffs formed by currently available bioactive compounds
    • Wassermann, A. M.; Dimova, D.; Bajorath, J. Comprehensive Analysis of Single-and Multi-Target Activity Cliffs Formed by Currently Available Bioactive Compounds. Chem. Biol. Drug Des. 2011, 78, 224-228.
    • (2011) Chem. Biol. Drug Des. , vol.78 , pp. 224-228
    • Wassermann, A.M.1    Dimova, D.2    Bajorath, J.3
  • 5
    • 80051982094 scopus 로고    scopus 로고
    • From activity cliffs to activity ridges: Informative data structures for SAR analysis
    • Vogt, M.; Huang, Y.; Bajorath, J. From Activity Cliffs to Activity Ridges: Informative Data Structures for SAR Analysis. J. Chem. Inf. Model. 2011, 51, 1848-1856.
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1848-1856
    • Vogt, M.1    Huang, Y.2    Bajorath, J.3
  • 7
    • 21244468757 scopus 로고    scopus 로고
    • Searching techniques for databases of two-and three-dimensional structures
    • Willett, P. Searching Techniques for Databases of Two-and Three-dimensional Structures. J. Med. Chem. 2005, 48, 1-17.
    • (2005) J. Med. Chem. , vol.48 , pp. 1-17
    • Willett, P.1
  • 8
    • 2042489375 scopus 로고    scopus 로고
    • Symyx Software: San Ramon, CA
    • MACCS Structural Keys; Symyx Software: San Ramon, CA, 2005.
    • (2005) MACCS Structural Keys
  • 10
    • 0037186503 scopus 로고    scopus 로고
    • Feature selection for structure-activity correlation using binary particle swarms
    • DOI 10.1021/jm0104668
    • Agrafiotis, D. K.; Cedeno, W. Feature Selection for Structure-Activity Correlation Using Binary Particle Swarms. J. Med. Chem. 2002, 45, 1098-1107. (Pubitemid 34173920)
    • (2002) Journal of Medicinal Chemistry , vol.45 , Issue.5 , pp. 1098-1107
    • Agrafiotis, D.K.1    Cedeno, W.2
  • 11
    • 2942522879 scopus 로고    scopus 로고
    • QSAR analysis of cyclooxygenase inhibitor using particle swarm optimization and multiple linear regression
    • DOI 10.1016/j.jpba.2004.02.026, PII S0731708504001128
    • Lu, J. X.; Shen, Q.; Jiang, J. H.; Shen, G. L.; Yu, R. Q. QSAR Analysis of Cyclooxygenase Inhibitors Using Particle Swarm Optimization and Multiple Linear Regression. J Pharm. Biomed. Anal. 2004, 35, 679-687. (Pubitemid 38757658)
    • (2004) Journal of Pharmaceutical and Biomedical Analysis , vol.35 , Issue.4 , pp. 679-687
    • Lu, J.-X.1    Shen, Q.2    Jiang, J.-H.3    Shen, G.-L.4    Yu, R.-Q.5
  • 12
    • 36348989005 scopus 로고    scopus 로고
    • PSO@AUTODOCK: A fast flexible molecular docking program based on swarm intelligence
    • DOI 10.1111/j.1747-0285.2007.00588.x
    • Namasivayam, V.; Gunther, R. PSO@Autodock3: A Fast Flexible Molecular Docking Program Based on Swarm Intelligence. Chem. Biol. Drug Des. 2007, 70, 475-484. (Pubitemid 350150870)
    • (2007) Chemical Biology and Drug Design , vol.70 , Issue.6 , pp. 475-484
    • Namasivayam, V.1    Gunther, R.2
  • 13
    • 45449111186 scopus 로고    scopus 로고
    • Concept of combinatorial de novo design of drug-like molecules by particle swarm optimization
    • DOI 10.1111/j.1747-0285.2008.00672.x
    • Hartenfeller, M.; Proschak, E.; Schuller, A.; Schneider, G. Concept of Combinatorial De Novo Design of Drug-like Molecules by Particle Swarm Optimization. Chem. Biol. Drug Des. 2008, 72, 16-26. (Pubitemid 351852775)
    • (2008) Chemical Biology and Drug Design , vol.72 , Issue.1 , pp. 16-26
    • Hartenfeller, M.1    Proschak, E.2    Schuller, A.3    Schneider, G.4
  • 14
    • 79960730936 scopus 로고    scopus 로고
    • Extraction of discontinuous structure-activity relationships from compound data sets through particle swarm optimization
    • Namasivayam, V.; Iyer, P.; Bajorath, J. Extraction of Discontinuous Structure-Activity Relationships from Compound Data Sets through Particle Swarm Optimization. J. Chem. Inf. Model. 2011, 51, 1545-1551.
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1545-1551
    • Namasivayam, V.1    Iyer, P.2    Bajorath, J.3
  • 15
    • 84155162374 scopus 로고    scopus 로고
    • Exploring SAR continuity in the vicinity of activity cliffs
    • Namasivayam, V.; Iyer, P.; Bajorath, J. Exploring SAR continuity in the vicinity of activity cliffs. Chem. Biol. Drug Des. 2012, 79, 22-29.
    • (2012) Chem. Biol. Drug Des. , vol.79 , pp. 22-29
    • Namasivayam, V.1    Iyer, P.2    Bajorath, J.3
  • 16
    • 36148989137 scopus 로고    scopus 로고
    • SAR Index: Quantifying the nature of structure-activity relationships
    • DOI 10.1021/jm0705713
    • Peltason, L.; Bajorath, J. SAR Index: Quantifying the Nature of Structure-Activity Relationships. J. Med. Chem. 2007, 50, 5571-5578. (Pubitemid 350106013)
    • (2007) Journal of Medicinal Chemistry , vol.50 , Issue.23 , pp. 5571-5578
    • Peltason, L.1    Bajorath, J.2
  • 17
    • 84879015433 scopus 로고    scopus 로고
    • Parameter selection in particle swarm optimization
    • Evolutionary Programming VII
    • Shi, Y.; Eberhart, R. C. Parameter Selection in Particle Swarm Optimization. Proceedings of the Seventh Annual Conference on Evolutionary Programming; 1998; pp 591-600. (Pubitemid 128118969)
    • (1998) Lecture Notes in Computer Science , Issue.1447 , pp. 591-600
    • Shi, Y.1    Eberhart, R.C.2
  • 18
    • 34548077926 scopus 로고    scopus 로고
    • Stagnation analysis in particle swarm optimization or what happens when nothing happens
    • University of Essex:, ISSN
    • Clerc, M. Stagnation Analysis in Particle Swarm Optimization or What Happens When Nothing Happens. Technical Report CSM-460; Department of Computer Science, University of Essex: 2006; ISSN: 1744-8050
    • (2006) Technical Report CSM-460; Department of Computer Science , pp. 1744-8050
    • Clerc, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.