Translocation of wild populations: Conservation implications for the genetic diversity of the black-lipped pearl oyster Pinctada margaritifera

Molecular Ecology

Volumn 21, Issue 12, 2012, Pages 2949-2962

  Lemer, Sarah ^a,b   Planes, Serge ^b,c  

^a UNIVERSITÉ DE PERPIGNAN   (France)

^b Laboratoire d'Excellence CORAIL   (France)

^c Centre de Biologie et d Ecologie Tropicale et Méditerranéenne   (French Polynesia)

Author keywords

aquaculture; bivalve; outbreeding depression; Pinctada margaritifera; relatedness; transfer

Indexed keywords

ANIMAL; ARTICLE; BREEDING; ENVIRONMENTAL PROTECTION; GENETIC VARIABILITY; GENETICS; GENOTYPE; PINCTADA; POLYNESIA;

ANIMALS; BREEDING; CONSERVATION OF NATURAL RESOURCES; GENETIC VARIATION; GENOTYPE; PINCTADA; POLYNESIA;

BIVALVIA; PINCTADA; PINCTADA MARGARITIFERA;

EID: 84862016374     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05588.x     Document Type: Article

References (88)

1. Alarcon JA, Magoulas A, Georgakopoulos T, Zouros E, Alvarez MC, (2004) Genetic comparison of wild and cultivated European populations of the gilthead sea bream (Sparus aurata). Aquaculture, 230, 65-80.
2. Araki H, Schmid C, (2010) Is hatchery stocking a help or harm? Evidence, limitations and future directions in ecological and genetic surveys. Aquaculture, 308, S2-S11.
3. Araki H, Cooper B, Blouin MS, (2007) Genetic effects of captive breeding cause a rapid, cumulative fitness decline in the wild. Science, 318, 100-103.
4. Arnaud-Haond S, Bonhomme F, Blanc F, (2003a) Large discrepancies in differentiation of allozymes, nuclear and mitochondrial DNA loci in recently founded pacific populations of the pearl oyster Pinctada margaritifera. Journal of Evolutionary Biology, 16, 388-398.
5. Arnaud-Haond S, Vonau V, Bonhomme F, et al. (2003b) Spat collection of the pearl oyster (Pinctada margaritifera cumingii) in French Polynesia: an evaluation of the potential impact on genetic variability of wild and farmed populations after 20 years of commercial exploitation. Aquaculture, 219, 181-192.
6. Arnaud-Haond S, Vonau V, Bonhomme F, et al. (2004) Spatio-temporal variation in the genetic composition of wild populations of pearl oyster (Pinctada margaritifera cumingii) in French Polynesia following 10 years of juvenile translocation. Molecular Ecology, 13, 2001-2007.
7. Arnaud-Haond S, Vonau V, Rouxel C, et al. (2008) Genetic structure at different spatial scales in the pearl oyster (Pinctada margaritifera cumingii) in French Polynesian lagoons: beware of sampling strategy and genetic patchiness. Marine Biology, 155, 147-157.
8. Banks SC, Piggott MP, Williamson JE, et al. (2007) Oceanic variability and coastal topography shape genetic structure in a long-dispersing sea urchin. Ecology, 88, 3055-3064.
9. Beaumont A, (2000) Genetic considerations in transfers and introductions of scallops. Aquaculture International, 8, 493-512.
10. Beaumont M, Bruford M, (1999) Microsatellites in conservation genetics. In: Microsatellites. Evolution and Applications (eds, Goldstein DB, Schlötterer SC,), pp. 165-182. Oxford University Press, Oxford.
11. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F, (2004) Genetix, logiciel sous Windows pour la génétique des populations Version 4.05.02. Universite' de Montpellier II, Montpellier, France.
12. Bell JD, Bartley DM, Lorenzen K, Loneragan NR, (2006) Restocking and stock enhancement of coastal fisheries: potential, problems and progress. Fisheries Research, 80, 1-8.
13. Bell JD, Purcell JW, Nash WJ, (2008) Restoring small-scale fisheries for tropical sea cucumbers. Ocean & Coastal Management, 51, 589-593.
14. Bell JD, Clua E, Hair CA, Galzin R, Doherty PJ, (2009) The capture and culture of post-larval fish and invertebrates for the marine ornamental trade. Reviews in Fisheries Science, 17, 223-240.
15. Blake SG, Blake NJ, Oesterling MJ, Graves JE, (1997) Genetic divergence and loss of diversity in two cultured populations of the bay scallop, Argopecten irradians (Lamarck, 1819). Journal of Shellfish Research, 16, 55-58.
16. Boudry P, Collet B, Cornette F, Hervouet V, Bonhomme F, (2002) High variance in reproductive success of the pacific oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses. Aquaculture, 204, 283-296.
17. Bouza C, Sanchez L, Martinez P, (1997) Gene diversity analysis in natural populations and cultured stocks of turbot (Scophthalmus maximus L). Animal Genetics, 28, 28-36.
18. Buston PM, Fauvelot C, Wong MYL, Planes S, (2009) Genetic relatedness in groups of the humbug damselfish Dascyllus aruanus: small, similar-sized individuals may be close kin. Molecular Ecology, 18, 4707-4715.
19. Coeroli M, Degaillande D, Landret JP, Coatanea D, (1984) Recent innovations in cultivation of mollusks in French Polynesia. Aquaculture, 39, 45-67.
20. Crawford NG, (2010) Smogd: software for the measurement of genetic diversity. Molecular Ecology Resources, 10, 556-557.
21. Crutsinger GM, Souza L, Sanders NJ, (2008) Intraspecific diversity and dominant genotypes resist plant invasions. Ecology Letters, 11, 16-23.
22. Durand P, Wada KT, Blanc F, (1993) Genetic variation in wild and hatchery stocks of the black pearl oyster, Pinctada margaritifera, from Japan. Aquaculture, 110, 27-40.
23. Eldridge WH, Naish KA, (2007) Long-term effects of translocation and release numbers on fine-scale population structure among coho salmon (Oncorhynchus kisutch). Molecular Ecology, 16, 2407-2421.
24. Estoup A, Angers B, (1998) Microsatellites and minisatellites for molecular ecology: theoretical and empirical considerations. In: Advances in Molecular Ecology (ed., Carvalho GR,), pp. 55-86. IOS Press, Amsterdam.
25. Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
26. Evans B, Bartlett J, Sweijd N, Cook P, Elliott NG, (2004) Loss of genetic variation at microsatellite loci in hatchery produced abalone in Australia (Haliotis rubra) and South Africa (Haliotis midae). Aquaculture, 233, 109-127.
27. Excoffier L, Laval G, Schneider S, (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 47-50.
28. Frankham R, (2005) Genetics and extinction. Biological Conservation, 126, 131-140.
29. Gaffney PM, (2006) The role of genetics in shellfish restoration. Aquatic Living Resources, 19, 277-282.
30. Gaffney PM, Rubin VP, Hedgecock D, et al. (1996) Genetic effects of artificial propagation: signals from wild and hatchery populations of red abalone in California. Aquaculture, 143, 257-266.
31. Gaffney PM, Pascal C, Barnhart J, Grant W, Seeb J, (2010) Genetic homogeneity of weathervane scallops (Patinopecten caurinus) in the northeastern Pacific. Canadian Journal of Fisheries and Aquatic Sciences, 67, 1827-1839.
32. Gardner C, Frusher S, Mills D, Oliver M, (2006) Simultaneous enhancement of rock lobster fisheries and provision of puerulus for aquaculture. Fisheries Research, 80, 122-128.
33. Gervis M, Sims N, (1992) The Biology and Culture of Pearl Oysters (bivalvia: Pteriidae), p. 49. ICLAM Stud Rev, Manila, Philippines.
34. Goodnight KF, Queller DC, (1999) Computer software for performing likelihood tests of pedigree relationship using genetic markers. Molecular Ecology, 8, 1231-1234.
35. Hair C, Bell J, Doherty P, (2002) The use of wild-caught juveniles in coastal aquaculture and its application to coral reef fishes. In: Responsible Marine Aquaculture (eds, Stickney RR, McVey JP,), pp. 327-353. CAB International, New York City, New York.
36. Hansen MM, Ruzzante DE, Nielsen EE, Mensberg KLD, (2000) Microsatellite and mitochondrial DNA polymorphism reveals life-history dependent interbreeding between hatchery and wild brown trout (Salmo trutta L.). Molecular Ecology, 9, 583-594.
37. Hansen MM, Fraser DJ, Meier K, Mensberg KLD, (2009) Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines. Molecular Ecology, 18, 2549-2562.
38. Hedgecock D, (1994) Temporal and spatial genetic-structure of marine animal populations in the California current. California Cooperative Oceanic Fisheries Investigations Reports, 35, 73-81.
39. Hedgecock D, Sly F, (1990) Genetic drift and effective population sizes of hatchery-propagated stocks of the pacific oyster, Crassostrea gigas. Aquaculture, 88, 21-38.
40. Hedgecock D, Chow V, Waples RS, (1992) Effective population numbers of shellfish broodstocks estimated from temporal variance in allelic frequencies. Aquaculture, 108, 215-232.
41. ST: how wrong have we been? Molecular Ecology, 18, 2080-2083.
42. Herbinger CM, Smith CA, Langy S, (2006) Development and characterization of novel tetra- and dinucleotide microsatellite markers for the French Polynesia black-lipped pearl oyster, Pinctada margaritifera. Molecular Ecology Notes, 6, 107-109.
43. Huvet A, Boudry P, Ohresser M, Delsert C, Bonhomme F, (2000) Variable microsatellites in the pacific oyster Crassostrea gigas and other cupped oyster species. Animal Genetics, 31, 71-72.
44. Johnson MS, (2000) Measuring and interpreting genetic structure to minimize the genetic risks of translocations. Aquaculture Research, 31, 133-143.
45. ST and its relatives do not measure differentiation. Molecular Ecology, 17, 4015-4026.
46. Kenchington EL, Patwary MU, Zouros E, Bird CJ, (2006) Genetic differentiation in relation to marine landscape in a broadcast-spawning bivalve mollusc (Placopecten magellanicus). Molecular Ecology, 15, 1781-1796.
47. Kong LF, Li Q, (2007) Genetic comparison of cultured and wild populations of the clam Coelomactra antiquata (Spengler) in china using AFLP markers. Aquaculture, 271, 152-161.
48. Konovalov DA, Manning C, Henshaw MT, (2004) Kingroup: a program for pedigree relationship reconstruction and kin group assignments using genetic markers. Molecular Ecology Notes, 4, 779-782.
49. Lallias D, Boudry P, Lapegue S, King JW, Beaumont AR, (2010) Strategies for the retention of high genetic variability in European flat oyster (Ostrea edulis) restoration programmes. Conservation Genetics, 11, 1899-1910.
50. Larson RJ, Julian RM, (1999) Spatial and temporal genetic patchiness in marine populations and their implications for fisheries management. California Cooperative Oceanic Fisheries Investigations Reports, 40, 94-99.
51. Launey S, Ledu C, Boudry P, Bonhomme F, Naciri-Graven Y, (2002) Geographic structure in the European flat oyster (Ostrea edulis L.) as revealed by microsatellite polymorphism. Journal of Heredity, 93, 331-338.
52. Le Pennec M, Anastas M, Bichet H, et al. (2010) Huëtre perlière et perles de Tahiti. Université de la Polynésie française, Tahiti.
53. Lemay MA, Boulding EG, (2009) Microsatellite pedigree analysis reveals high variance in reproductive success and reduced genetic diversity in hatchery-spawned northern abalone. Aquaculture, 295, 22-29.
54. Lemer S, Rochel E, Planes S, (2011) Correction method for null alleles in species with variable microsatellite flanking regions, a case study of the black-lipped pearl oyster Pinctada margaritifera. Journal of Heredity, 102, 243-246.
55. Levin PS, Achord S, Feist BE, Zabel RW, (2002) Non-indigenous brook trout and the demise of Pacific salmon: a forgotten threat? Proceedings of the Royal Society B-Biological Sciences, 269, 1663-1670.
56. Li Q, Xu KF, Yu RH, (2007) Genetic variation in Chinese hatchery populations of the Japanese scallop (Patinopecten yessoensis) inferred from microsatellite data. Aquaculture, 269, 211-219.
57. Lind CE, Evans BS, Knauer J, Taylor JJU, Jerry DR, (2009) Decreased genetic diversity and a reduced effective population size in cultured silver-upped pearl oysters (Pinctada maxima). Aquaculture, 286, 12-19.
58. McClelland EK, Naish KA, (2007) What is the fitness outcome of crossing unrelated fish populations? A meta-analysis and an evaluation of future research directions. Conservation Genetics, 8, 397-416.
59. McGinnity P, Jennings E, DeEyto E, et al. (2009) Impact of naturally spawning captive-bred Atlantic salmon on wild populations: depressed recruitment and increased risk of climate-mediated extinction. Proceedings of the Royal Society B-Biological Sciences, 276, 3601-3610.
60. McLean JE, Seamons TR, Dauer MB, Bentzen P, Quinn TP, (2008) Variation in reproductive success and effective number of breeders in a hatchery population of steelhead trout (Oncorhynchus mykiss): examination by microsatellite-based parentage analysis. Conservation Genetics, 9, 295-304.
61. Miller LM, Close T, Kapuscinski AR, (2004) Lower fitness of hatchery and hybrid rainbow trout compared to naturalized populations in Lake Superior tributaries. Molecular Ecology, 13, 3379-3388.
62. Moritz C, (1999) Conservation units and translocations: strategies for conserving evolutionary processes. Hereditas, 130, 217-228.
63. Muhlfeld CC, Kalinowski ST, McMahon TE, et al. (2009) Hybridization rapidly reduces fitness of a native trout in the wild. Biology Letters, 5, 328-331.
64. Nei M, (1987) Molecular Evolutionary Genetics. Columbia University Press, New York City, New York.
65. Noakes DJ, Beamish RJ, Kent ML, (2000) On the decline of pacific salmon and speculative links to salmon farming in British Columbia. Aquaculture, 183, 363-386.
66. Nuñez MA, Simberloff D, Relva MA, (2008) Seed predation as a barrier to alien conifer invasions. Biological Invasions, 10, 1389-1398.
67. Peakall R, Smouse P, (2006) Genalex 6: genetic analysis in excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
68. Pereira JC, Lino PG, Leitao A, et al. (2010) Genetic differences between wild and hatchery populations of Diplodus sargus and D. vulgaris inferred from RAPD markers: implications for production and restocking programs design. Journal of Applied Genetics, 51, 67-72.
69. Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
70. Raymond M, Rousset F, (1995) An exact test for population differentiation. Evolution, 49, 1280-1283.
71. Rice WR, (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
72. Saavedra C, Guerra A, (1996) Allozyme heterozygosity, founder effect and fitness traits in a cultivated population of the European oyster, Ostrea edulis. Aquaculture, 139, 203-224.
73. Sarver D, Sims N, (1996) Overcoming the scarcity of pearl oyster (Pinctada margaritifera) in Micronesia and Hawaii: new areas and opportunities for pearl farming. In: Aquaculture '95 Book of Abstracts. World Aquaculture Society, pp. 406-407, Baton Rouge.
74. Selkoe KA, Watson JR, White C, et al. (2010) Taking the chaos out of genetic patchiness: seascape genetics reveals ecological and oceanographic drivers of genetic patterns in three temperate reef species. Molecular Ecology, 19, 3708-3726.
75. Smith C, Benzie JAH, Wilson KJ, (2003) Isolation and characterization of eight microsatellite loci from silver-lipped pearl oyster Pinctada maxima. Molecular Ecology Notes, 3, 125-127.
76. Southgate PC, Beer AC, (1997) Hatchery and early nursery culture of the blacklip pearl oyster (Pinctada margaritifera L.). Journal of Shellfish Research, 16, 561-567.
77. Susñik S, Berrebi P, Dovc P, Hansen MM, Snoj A, (2004) Genetic introgression between wild and stocked salmonids and the prospects for using molecular markers in population rehabilitation: the case of the Adriatic grayling (Thymallus thymallus L. 1785). Heredity, 93, 273-282.
78. Tallmon DA, Koyuk A, Luikart G, Beaumont MA, (2008) Onesamp: a program to estimate effective population size using approximate Bayesian computation. Molecular Ecology Resources, 8, 299-301.
79. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P, (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
80. Vasemägi A, Gross R, Paaver T, Koljonen ML, Nilsson J, (2005) Extensive immigration from compensatory hatchery releases into wild Atlantic salmon population in the Baltic sea: spatio-temporal analysis over 18 years. Heredity, 95, 76-83.
81. Waples RS, (2006) A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci. Conservation Genetics, 7, 167-184.
82. Waples RS, Do C, (2008) Ldne: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources, 8, 753-756.
83. Ward RD, (2006) The importance of identifying spatial population structure in restocking and stock enhancement programmes. Fisheries Research, 80, 9-18.
84. Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
85. Weir BS, Anderson AD, Hepler AB, (2006) Genetic relatedness analysis: modern data and new challenges. Nature Reviews Genetics, 7, 771-780.
86. Whitlock MC, (2000) Fixation of new alleles and the extinction of small populations: drift load, beneficial alleles, and sexual selection. Evolution, 54, 1855-1861.
87. Yu DH, Chu KH, (2006) Genetic variation in wild and cultured populations of the pearl oyster Pinctada fucata from southern China. Aquaculture, 258, 220-227.
88. Yu Z, Guo X, (2005) Genetic analysis of selected strains of the eastern oyster (Crassostrea virginica Gmelin) using AFLP and microsatellite markers. Marine Biotechnology, 6, 575-586.