Comparison and evaluation of molecular methods used for identification and discrimination of lactic acid bacteria

Journal of the Science of Food and Agriculture

Volumn 92, Issue 9, 2012, Pages 1931-1936

  Pál, Károly ^a   Szén, Orsolya ^a   Kiss, Attila ^a   Naár, Zoltán ^a  

^a ESZTERHÁZY KÁROLY UNIVERSITY   (Hungary)

Author keywords

16S rDNA; ARDRA; Bifidobacteria; Lactic acid bacteria; RAPD; Sequencing

Indexed keywords

ARTICLE; BIFIDOBACTERIUM; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; EVALUATION; FOOD ANALYSIS; FOOD CONTROL; GENETICS; HUMAN; LACTOBACILLUS; METHODOLOGY; MOLECULAR TYPING; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION MAPPING; SPECIES DIFFERENCE;

BIFIDOBACTERIUM; FOOD ANALYSIS; FOOD MICROBIOLOGY; HUMANS; LACTOBACILLUS; MOLECULAR TYPING; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RESTRICTION MAPPING; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); BIFIDOBACTERIUM; LACTOBACILLUS; LACTOBACILLUS CASEI;

EID: 84861986820     PISSN: 00225142     EISSN: 10970010     Source Type: Journal    
DOI: 10.1002/jsfa.5564     Document Type: Article

References (16)

1. Naidu AS, Bidlack WR and Clemens RA, Probiotic spectra of lactic acid bacteria (LAB). Crit Rev Food Sci Nutr 38: 13-126 (1999).
2. Alvarez-Olmos MI and Oberhelman RA, Probiotic agents and infectious diseases: a modern perspective on a traditional therapy. Clin Infect Dis 32: 1567-1576 (2001).
3. Tilsala-Timisjärvi A and Alatossava T, Strain-specific identification of probiotic Lactobacillus rhamnosus with randomly amplified polymorphic DNA-derived PCR primers. Appl Environ Microbiol 64: 4816-4819 (1998).
4. Roy D and Sirois S, Molecular differentiation of Bifidobacterium species with amplified ribosomal DNA restriction analysis and alignment of short regions of the ldh gene. FEMS Microbiol Lett 191: 17-24 (2000).
5. Moreira JLS, Mota RM, Horta MF, Teixeira SMR, Neumann E, Nicoli JR, et al, Identification to the species level of Lactobacillus isolated in probiotic prospecting studies of human, animal or food origin by 16S-23S rRNA restriction profiling. BMC Microbiol 5: 15-23 (2005).
6. Collado MC, Moreno Y, Cobo JM and Hernández M, Microbiological evaluation and molecular characterization of bifidobacteria strains in commercial fermented milks. Eur Food Res Technol 222: 112-117 (2006).
7. Sidarenka AV, Novik GI and Akimov VN, Application of molecular methods to classification and identification of bacteria of the genus Bifidobacterium. Microbiology 77: 251-260 (2008).
8. Vaneechoutte M, Rosseau R, De Vos P, Gillis M, Janssens D, Paepe N, et al, Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA). FEMS Microbiol Lett 93: 227-234 (1992).
9. Janda JM and Abbott SL, 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J Clin Microbiol 45: 2761-2764 (2007).
10. Ward LJH and Timmins MJ, Differentiation of Lactobacillus casei, Lactobacillus paracasei and Lactobacillus rhamnosus by polymerase chain reaction. Lett Appl Microbiol 29: 90-92 (1999).
11. Desai AR, Shah NP and Powell IB, Discrimination of dairy industry isolates of the Lactobacillus casei group. J Dairy Sci 89: 3345-3351 (2006).
12. Baker GC, Smith JJ and Cowan DA, Review and re-analysis of domain-specific 16S primers. J Microbiol Meth 55: 541-555 (2003).
13. Huang CH and Lee FL, Development of novel species-specific primers for species identification of the Lactobacillus casei group based on RAPD fingerprints. J Sci Food Agric 89: 1831-1837 (2009).
14. Rodas AM, Ferrer S and Pardo I, 16S-ARDRA, a tool for identification of lactic acid bacteria isolated from grape must and wine. Syst Appl Microbiol 26: 412-422 (2003).
15. Christensen JE, Reynolds CE, Shukla SK and Reed KD, Rapid molecular diagnosis of Lactobacillus bacteremia by terminal restriction fragment length polymorphism analysis of the 16S rRNA gene. Clin Med Res 2: 37-45 (2004).
16. Mori K, Yamazaki K, Ishiyama T, Katsumata M, Kobayashi K, Kawai Y, et al, Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei related taxa. Int J Syst Bacteriol 47: 54-57 (1997).