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Volumn 20, Issue 6, 2012, Pages 1007-1018

Structural basis for polyadenosine-RNA binding by Nab2 Zn fingers and its function in mRNA nuclear export

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; MESSENGER RNA; NUCLEAR RNA; POLYADENOSINE RNA BINDING PROTEIN NAB2; RNA HELICASE; RNA HELICASE DBP5; UNCLASSIFIED DRUG;

EID: 84861978013     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2012.03.011     Document Type: Article
Times cited : (33)

References (54)
  • 2
    • 0029845118 scopus 로고    scopus 로고
    • Kap104p: A karyopherin involved in the nuclear transport of messenger RNA binding proteins
    • Aitchison, J.D., Blobel, G., and Rout, M.P. (1996). Kap104p: a karyopherin involved in the nuclear transport of messenger RNA binding proteins. Science 274, 624-627.
    • (1996) Science , vol.274 , pp. 624-627
    • Aitchison, J.D.1    Blobel, G.2    Rout, M.P.3
  • 3
    • 33745736445 scopus 로고    scopus 로고
    • Inositol hexakisphosphate and Gle1 activate the DEAD-box protein Dbp5 for nuclear mRNA export
    • Alcá zar-Romá n, A.R., Tran, E.J., Guo, S., and Wente, S.R. (2006). Inositol hexakisphosphate and Gle1 activate the DEAD-box protein Dbp5 for nuclear mRNA export. Nat. Cell Biol. 8, 711-716.
    • (2006) Nat. Cell Biol. , vol.8 , pp. 711-716
    • Alcázar-Román, A.R.1    Tran, E.J.2    Guo, S.3    Wente, S.R.4
  • 4
    • 0027322091 scopus 로고
    • NAB2: A yeast nuclear polyadenylated RNA-binding protein essential for cell viability
    • Anderson, J.T., Wilson, S.M., Datar, K.V., and Swanson, M.S. (1993). NAB2: a yeast nuclear polyadenylated RNA-binding protein essential for cell viability. Mol. Cell. Biol. 13, 2730-2741.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 2730-2741
    • Anderson, J.T.1    Wilson, S.M.2    Datar, K.V.3    Swanson, M.S.4
  • 5
    • 4344714328 scopus 로고    scopus 로고
    • The yeast Apq12 protein affects nucleocytoplasmic mRNA transport
    • Baker, K.E., Coller, J., and Parker, R. (2004). The yeast Apq12 protein affects nucleocytoplasmic mRNA transport. RNA 10, 1352-1358.
    • (2004) RNA , vol.10 , pp. 1352-1358
    • Baker, K.E.1    Coller, J.2    Parker, R.3
  • 6
    • 71749088820 scopus 로고    scopus 로고
    • Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure
    • Batisse, J., Batisse, C., Budd, A., Böttcher, B., and Hurt, E. (2009). Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. J. Biol. Chem. 284, 34911-34917.
    • (2009) J. Biol. Chem. , vol.284 , pp. 34911-34917
    • Batisse, J.1    Batisse, C.2    Budd, A.3    Böttcher, B.4    Hurt, E.5
  • 7
    • 0023673238 scopus 로고
    • Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins
    • Berg, J.M. (1988). Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins. Proc. Natl. Acad. Sci. USA 85,99-102.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 99-102
    • Berg, J.M.1
  • 8
    • 0023484186 scopus 로고
    • 5-Fluoroorotic acid as a selective agent in yeast molecular genetics
    • Boeke, J.D., Trueheart, J., Natsoulis, G., and Fink, G.R. (1987). 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 154,164-175.
    • (1987) Methods Enzymol. , vol.154 , pp. 164-175
    • Boeke, J.D.1    Trueheart, J.2    Natsoulis, G.3    Fink, G.R.4
  • 9
    • 68949187846 scopus 로고    scopus 로고
    • MRNA nuclear export at a glance
    • Carmody, S.R., and Wente, S.R. (2009). mRNA nuclear export at a glance. J. Cell Sci. 122, 1933-1937.
    • (2009) J. Cell Sci. , vol.122 , pp. 1933-1937
    • Carmody, S.R.1    Wente, S.R.2
  • 11
    • 0344011148 scopus 로고    scopus 로고
    • Evidence that poly(A) binding protein has an evolutionarily conserved function in facilitating mRNA biogenesis and export
    • Chekanova, J.A., and Belostotsky, D.A. (2003). Evidence that poly(A) binding protein has an evolutionarily conserved function in facilitating mRNA biogenesis and export. RNA 9, 1476-1490.
    • (2003) RNA , vol.9 , pp. 1476-1490
    • Chekanova, J.A.1    Belostotsky, D.A.2
  • 12
    • 33646516400 scopus 로고    scopus 로고
    • Transport of messenger RNA from the nucleus to the cytoplasm
    • Cole, C.N., and Scarcelli, J.J. (2006). Transport of messenger RNA from the nucleus to the cytoplasm. Curr. Opin. Cell Biol. 18, 299-306.
    • (2006) Curr. Opin. Cell Biol. , vol.18 , pp. 299-306
    • Cole, C.N.1    Scarcelli, J.J.2
  • 14
    • 0004757060 scopus 로고    scopus 로고
    • San Francisco: University of California, San Francisco
    • Goddard TD and Kneller DG. (2008). SPARKY 3 (San Francisco: University of California, San Francisco). http://www.cgl.ucsf.edu/home/sparky/.
    • (2008) SPARKY , vol.3
    • Goddard, T.D.1    Kneller, D.G.2
  • 16
    • 0037040895 scopus 로고    scopus 로고
    • Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p
    • Green, D.M., Marfatia, K.A., Crafton, E.B., Zhang, X., Cheng, X., and Corbett, A.H. (2002). Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p. J. Biol. Chem. 277, 7752-7760.
    • (2002) J. Biol. Chem. , vol.277 , pp. 7752-7760
    • Green, D.M.1    Marfatia, K.A.2    Crafton, E.B.3    Zhang, X.4    Cheng, X.5    Corbett, A.H.6
  • 17
    • 79960631283 scopus 로고    scopus 로고
    • Nuclear export dynamics of RNA-protein complexes
    • Grünwald, D., Singer, R.H., and Rout, M. (2011). Nuclear export dynamics of RNA-protein complexes. Nature 475, 333-341.
    • (2011) Nature , vol.475 , pp. 333-341
    • Grünwald, D.1    Singer, R.H.2    Rout, M.3
  • 18
    • 40949126458 scopus 로고    scopus 로고
    • Increasing the sensitivity of cryoprobe protein NMR experiments by using the sole low-conductivity arginine glutamate salt
    • Hautbergue, G.M., and Golovanov, A.P. (2008). Increasing the sensitivity of cryoprobe protein NMR experiments by using the sole low-conductivity arginine glutamate salt. J. Magn. Reson. 191, 335-339.
    • (2008) J. Magn. Reson. , vol.191 , pp. 335-339
    • Hautbergue, G.M.1    Golovanov, A.P.2
  • 20
    • 0036308102 scopus 로고    scopus 로고
    • Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
    • Herrmann, T., Güntert, P., and Wüthrich, K. (2002). Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 319,209-227.
    • (2002) J. Mol. Biol. , vol.319 , pp. 209-227
    • Herrmann, T.1    Güntert, P.2    Wüthrich, K.3
  • 22
    • 44449169243 scopus 로고    scopus 로고
    • Regulation of mRNP dynamics along the export pathway
    • Iglesias, N., and Stutz, F. (2008). Regulation of mRNP dynamics along the export pathway. FEBS Lett. 582, 1987-1996.
    • (2008) FEBS Lett. , vol.582 , pp. 1987-1996
    • Iglesias, N.1    Stutz, F.2
  • 24
    • 58649121693 scopus 로고    scopus 로고
    • Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 30 end processing factor Pcf11
    • Johnson, S.A., Cubberley, G., and Bentley, D.L. (2009). Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 30 end processing factor Pcf11. Mol. Cell 33, 215-226.
    • (2009) Mol. Cell , vol.33 , pp. 215-226
    • Johnson, S.A.1    Cubberley, G.2    Bentley, D.L.3
  • 26
    • 68549092769 scopus 로고    scopus 로고
    • Messenger RNA export from the nucleus: A series of molecular wardrobe changes
    • Kelly, S.M., and Corbett, A.H. (2009). Messenger RNA export from the nucleus: a series of molecular wardrobe changes. Traffic 10, 1199-1208.
    • (2009) Traffic , vol.10 , pp. 1199-1208
    • Kelly, S.M.1    Corbett, A.H.2
  • 28
    • 77956218755 scopus 로고    scopus 로고
    • Recognition of polyadenosine RNA by the zinc finger domain of nuclear poly(A) RNA-binding protein 2 (Nab2) is required for correct mRNA 30-end formation
    • Kelly, S.M., Leung, S.W., Apponi, L.H., Bramley, A.M., Tran, E.J., Chekanova, J.A., Wente, S.R., and Corbett, A.H. (2010). Recognition of polyadenosine RNA by the zinc finger domain of nuclear poly(A) RNA-binding protein 2 (Nab2) is required for correct mRNA 30-end formation. J. Biol. Chem. 285, 26022-26032.
    • (2010) J. Biol. Chem. , vol.285 , pp. 26022-26032
    • Kelly, S.M.1    Leung, S.W.2    Apponi, L.H.3    Bramley, A.M.4    Tran, E.J.5    Chekanova, J.A.6    Wente, S.R.7    Corbett, A.H.8
  • 29
    • 34648816826 scopus 로고    scopus 로고
    • Exporting RNA from the nucleus to the cytoplasm
    • Köhler, A., and Hurt, E. (2007). Exporting RNA from the nucleus to the cytoplasm. Nat. Rev. Mol. Cell Biol. 8, 761-773.
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 761-773
    • Köhler, A.1    Hurt, E.2
  • 30
    • 67349250405 scopus 로고    scopus 로고
    • Splice variants of the human ZC3H14 gene generate multiple isoforms of a zinc finger polyadenosine RNA binding protein
    • Leung, S.W., Apponi, L.H., Cornejo, O.E., Kitchen, C.M., Valentini, S.R., Pavlath, G.K., Dunham, C.M., and Corbett, A.H. (2009). Splice variants of the human ZC3H14 gene generate multiple isoforms of a zinc finger polyadenosine RNA binding protein. Gene 439, 71-78.
    • (2009) Gene , vol.439 , pp. 71-78
    • Leung, S.W.1    Apponi, L.H.2    Cornejo, O.E.3    Kitchen, C.M.4    Valentini, S.R.5    Pavlath, G.K.6    Dunham, C.M.7    Corbett, A.H.8
  • 31
    • 27944474017 scopus 로고    scopus 로고
    • The DEAD-box protein Dbp5p is required to dissociate Mex67p from exported mRNPs at the nuclear rim
    • Lund, M.K., and Guthrie, C. (2005). The DEAD-box protein Dbp5p is required to dissociate Mex67p from exported mRNPs at the nuclear rim. Mol. Cell 20, 645-651.
    • (2005) Mol. Cell , vol.20 , pp. 645-651
    • Lund, M.K.1    Guthrie, C.2
  • 32
    • 0037470143 scopus 로고    scopus 로고
    • Domain analysis of the Saccharomyces cerevisiae heterogeneous nuclear ribonucleoprotein, Nab2p. Dissecting the requirements for Nab2p-facilitated poly(A) RNA export
    • Marfatia, K.A., Crafton, E.B., Green, D.M., and Corbett, A.H. (2003). Domain analysis of the Saccharomyces cerevisiae heterogeneous nuclear ribonucleoprotein, Nab2p. Dissecting the requirements for Nab2p-facilitated poly(A) RNA export. J. Biol. Chem. 278, 6731-6740.
    • (2003) J. Biol. Chem. , vol.278 , pp. 6731-6740
    • Marfatia, K.A.1    Crafton, E.B.2    Green, D.M.3    Corbett, A.H.4
  • 33
    • 0025753244 scopus 로고
    • Mutations in the yeast RNA14 and RNA15 genes result in an abnormal mRNA decay rate; sequence analysis reveals an RNA-binding domain in the RNA15 protein
    • Minvielle-Sebastia, L., Winsor, B., Bonneaud, N., and Lacroute, F. (1991). Mutations in the yeast RNA14 and RNA15 genes result in an abnormal mRNA decay rate; sequence analysis reveals an RNA-binding domain in the RNA15 protein. Mol. Cell. Biol. 11, 3075-3087.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 3075-3087
    • Minvielle-Sebastia, L.1    Winsor, B.2    Bonneaud, N.3    Lacroute, F.4
  • 35
    • 70349306459 scopus 로고    scopus 로고
    • Assembly of an export-competent mRNP is needed for efficient release of the 30-end processing complex after polyadenylation
    • Qu, X., Lykke-Andersen, S., Nasser, T., Saguez, C., Bertrand, E., Jensen, T.H., and Moore, C. (2009). Assembly of an export-competent mRNP is needed for efficient release of the 30-end processing complex after polyadenylation. Mol. Cell. Biol. 29, 5327-5338.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 5327-5338
    • Qu, X.1    Lykke-Andersen, S.2    Nasser, T.3    Saguez, C.4    Bertrand, E.5    Jensen, T.H.6    Moore, C.7
  • 38
    • 55749110920 scopus 로고    scopus 로고
    • Synthetic genetic array analysis in Saccharomyces cerevisiae provides evidence for an interaction between RAT8/DBP5 and genes encoding P-body components
    • Scarcelli, J.J., Viggiano, S., Hodge, C.A., Heath, C.V., Amberg, D.C., and Cole, C.N. (2008). Synthetic genetic array analysis in Saccharomyces cerevisiae provides evidence for an interaction between RAT8/DBP5 and genes encoding P-body components. Genetics 179, 1945-1955.
    • (2008) Genetics , vol.179 , pp. 1945-1955
    • Scarcelli, J.J.1    Viggiano, S.2    Hodge, C.A.3    Heath, C.V.4    Amberg, D.C.5    Cole, C.N.6
  • 40
    • 0032080030 scopus 로고    scopus 로고
    • Dbp5p/ Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export
    • Snay-Hodge, C.A., Colot, H.V., Goldstein, A.L., and Cole, C.N. (1998). Dbp5p/ Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export. EMBO J. 17, 2663-2676.
    • (1998) EMBO J. , vol.17 , pp. 2663-2676
    • Snay-Hodge, C.A.1    Colot, H.V.2    Goldstein, A.L.3    Cole, C.N.4
  • 41
    • 33846702294 scopus 로고    scopus 로고
    • Ratcheting mRNA out of the nucleus
    • Stewart, M. (2007). Ratcheting mRNA out of the nucleus. Mol. Cell 25, 327-330.
    • (2007) Mol. Cell , vol.25 , pp. 327-330
    • Stewart, M.1
  • 42
    • 78049296915 scopus 로고    scopus 로고
    • Nuclear export of mRNA
    • Stewart, M. (2010). Nuclear export of mRNA. Trends Biochem. Sci. 35, 609-617.
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 609-617
    • Stewart, M.1
  • 43
    • 0033569797 scopus 로고    scopus 로고
    • The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p
    • Strahm, Y., Fahrenkrog, B., Zenklusen, D., Rychner, E., Kantor, J., Rosbach, M., and Stutz, F. (1999). The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p. EMBO J. 18, 5761-5777.
    • (1999) EMBO J. , vol.18 , pp. 5761-5777
    • Strahm, Y.1    Fahrenkrog, B.2    Zenklusen, D.3    Rychner, E.4    Kantor, J.5    Rosbach, M.6    Stutz, F.7
  • 44
    • 4143093698 scopus 로고    scopus 로고
    • Nuclear export of the yeast mRNA-binding protein Nab2 is linked to a direct interaction with Gfd1 and to Gle1 function
    • Suntharalingam, M., Alcázar-Romá n, A.R., and Wente, S.R. (2004). Nuclear export of the yeast mRNA-binding protein Nab2 is linked to a direct interaction with Gfd1 and to Gle1 function. J. Biol. Chem. 279, 35384-35391.
    • (2004) J. Biol. Chem. , vol.279 , pp. 35384-35391
    • Suntharalingam, M.1    Alcázar-Román, A.R.2    Wente, S.R.3
  • 45
    • 57149097433 scopus 로고    scopus 로고
    • Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1
    • Teplova, M., and Patel, D.J. (2008). Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1. Nat. Struct. Mol. Biol. 15, 1343-1351.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 1343-1351
    • Teplova, M.1    Patel, D.J.2
  • 46
    • 36749016233 scopus 로고    scopus 로고
    • The DEAD-box protein Dbp5 controls mRNA export by triggering specific RNA:protein remodeling events
    • Tran, E.J., Zhou, Y., Corbett, A.H., and Wente, S.R. (2007). The DEAD-box protein Dbp5 controls mRNA export by triggering specific RNA:protein remodeling events. Mol. Cell 28, 850-859.
    • (2007) Mol. Cell , vol.28 , pp. 850-859
    • Tran, E.J.1    Zhou, Y.2    Corbett, A.H.3    Wente, S.R.4
  • 47
    • 15444368318 scopus 로고    scopus 로고
    • Perinuclear Mlp proteins downregulate gene expression in response to a defect in mRNA export
    • Vinciguerra, P., Iglesias, N., Camblong, J., Zenklusen, D., and Stutz, F. (2005). Perinuclear Mlp proteins downregulate gene expression in response to a defect in mRNA export. EMBO J. 24, 813-823.
    • (2005) EMBO J. , vol.24 , pp. 813-823
    • Vinciguerra, P.1    Iglesias, N.2    Camblong, J.3    Zenklusen, D.4    Stutz, F.5
  • 49
    • 33745742173 scopus 로고    scopus 로고
    • Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export
    • Weirich, C.S., Erzberger, J.P., Flick, J.S., Berger, J.M., Thorner, J., and Weis, K. (2006). Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export. Nat. Cell Biol. 8, 668-676.
    • (2006) Nat. Cell Biol. , vol.8 , pp. 668-676
    • Weirich, C.S.1    Erzberger, J.P.2    Flick, J.S.3    Berger, J.M.4    Thorner, J.5    Weis, K.6
  • 52
    • 0030923720 scopus 로고    scopus 로고
    • Interaction between the small GTPase Ran/Gsp1p and Ntf2p is required for nuclear transport
    • Wong, D.H., Corbett, A.H., Kent, H.M., Stewart, M., and Silver, P.A. (1997). Interaction between the small GTPase Ran/Gsp1p and Ntf2p is required for nuclear transport. Mol. Cell. Biol. 17, 3755-3767.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 3755-3767
    • Wong, D.H.1    Corbett, A.H.2    Kent, H.M.3    Stewart, M.4    Silver, P.A.5
  • 53
    • 0036234027 scopus 로고    scopus 로고
    • Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit water
    • Xia, B., Tsui, V., Case, D.A., Dyson, H.J., and Wright, P.E. (2002). Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit water. J. Biomol. NMR 22, 317-331.
    • (2002) J. Biomol. NMR , vol.22 , pp. 317-331
    • Xia, B.1    Tsui, V.2    Case, D.A.3    Dyson, H.J.4    Wright, P.E.5


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