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Volumn 318, Issue 12, 2012, Pages 1381-1385

Mitotic chromosome structure

Author keywords

Chromosome; Entropy; Folding; Loop formation; Modeling; Nuclear ARCHITECTURE; Polymer

Indexed keywords

CHROMOSOME SEGREGATION; CHROMOSOME STRUCTURE; CONFORMATION; ENTROPY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION; GENETIC LINKAGE; HUMAN; MACROMOLECULE; MITOSIS; PRIORITY JOURNAL; REVIEW;

EID: 84861919932     PISSN: 00144827     EISSN: 10902422     Source Type: Journal    
DOI: 10.1016/j.yexcr.2012.03.027     Document Type: Review
Times cited : (2)

References (44)
  • 1
    • 77956029272 scopus 로고    scopus 로고
    • Estrogen receptor action in three dimensions - looping the loop
    • Theodorou V., Carroll J.S. Estrogen receptor action in three dimensions - looping the loop. Breast Cancer Res. 2010, 12(1):303. 10.1186/bcr2470.
    • (2010) Breast Cancer Res. , vol.12 , Issue.1 , pp. 303
    • Theodorou, V.1    Carroll, J.S.2
  • 3
    • 77749323471 scopus 로고    scopus 로고
    • Upregulation of c-myc in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells
    • Wright J.B., Brown S.J., Cole M.D. Upregulation of c-myc in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells. Mol. Cell. Biol. 2010, 30(6):1411-1420. 10.1128/MCB.01384-09.
    • (2010) Mol. Cell. Biol. , vol.30 , Issue.6 , pp. 1411-1420
    • Wright, J.B.1    Brown, S.J.2    Cole, M.D.3
  • 5
    • 80053099289 scopus 로고    scopus 로고
    • Maternal diet, aging and diabetes meet at a chromatin loop
    • Ozanne S.E., Sandovici I., Constancia M. Maternal diet, aging and diabetes meet at a chromatin loop. Aging (Albany NY) 2011, 3(5):548-554.
    • (2011) Aging (Albany NY) , vol.3 , Issue.5 , pp. 548-554
    • Ozanne, S.E.1    Sandovici, I.2    Constancia, M.3
  • 6
    • 79952294070 scopus 로고    scopus 로고
    • A chromatin insulator driving three-dimensional polycomb response element (pre) contacts and polycomb association with the chromatin fiber
    • Comet I., Schuettengruber B., Sexton T., Cavalli G. A chromatin insulator driving three-dimensional polycomb response element (pre) contacts and polycomb association with the chromatin fiber. Proc. Natl. Acad. Sci. U. S. A. 2011, 108(6):2294-2299. 10.1073/pnas.1002059108.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , Issue.6 , pp. 2294-2299
    • Comet, I.1    Schuettengruber, B.2    Sexton, T.3    Cavalli, G.4
  • 7
    • 79954510417 scopus 로고    scopus 로고
    • In the loop: long range chromatin interactions and gene regulation
    • Dean A. In the loop: long range chromatin interactions and gene regulation. Brief Funct Genomics 2011, 10(1):3-10. 10.1093/bfgp/elq033.
    • (2011) Brief Funct Genomics , vol.10 , Issue.1 , pp. 3-10
    • Dean, A.1
  • 10
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the sequence: cellular organization of genome function
    • Misteli T. Beyond the sequence: cellular organization of genome function. Cell 2007, 128(4):787-800. 10.1016/j.cell.2007.01.028.
    • (2007) Cell , vol.128 , Issue.4 , pp. 787-800
    • Misteli, T.1
  • 11
    • 70450222694 scopus 로고    scopus 로고
    • A model for all genomes: the role of transcription factories
    • Cook P.R. A model for all genomes: the role of transcription factories. J. Mol. Biol. 2010, 395(1):1-10. 10.1016/j.jmb.2009.10.031.
    • (2010) J. Mol. Biol. , vol.395 , Issue.1 , pp. 1-10
    • Cook, P.R.1
  • 12
    • 79957818768 scopus 로고    scopus 로고
    • Physical nuclear organization: loops and entropy
    • Heermann D.W. Physical nuclear organization: loops and entropy. Curr. Opin. Cell Biol. 2011, 23(3):332-337. 10.1016/j.ceb.2011.03.010.
    • (2011) Curr. Opin. Cell Biol. , vol.23 , Issue.3 , pp. 332-337
    • Heermann, D.W.1
  • 13
    • 79952807125 scopus 로고    scopus 로고
    • Chromatin folding-from biology to polymer models and back
    • Tark-Dame M., van Driel R., Heermann D.W. Chromatin folding-from biology to polymer models and back. J. Cell Sci. 2011, 124(Pt 6):839-845. 10.1242/jcs.077628.
    • (2011) J. Cell Sci. , vol.124 , Issue.PART 6 , pp. 839-845
    • Tark-Dame, M.1    van Driel, R.2    Heermann, D.W.3
  • 14
    • 77951896883 scopus 로고    scopus 로고
    • Standard definitions of persistence length do not describe the local "intrinsic" stiffness of real polymer chains
    • Hsu H.-P., Paul W., Binder K. Standard definitions of persistence length do not describe the local "intrinsic" stiffness of real polymer chains. Macromolecules 2010, 43(6):3094-3102. arXiv:http://pubs.acs.org/doi/pdf/10.1021/ma902715e,URL http://pubs.acs.org/doi/abs/10.1021/ma902715e. 10.1021/ma902715e.
    • (2010) Macromolecules , vol.43 , Issue.6 , pp. 3094-3102
    • Hsu, H.-P.1    Paul, W.2    Binder, K.3
  • 15
    • 70449086211 scopus 로고    scopus 로고
    • Depletion effects massively change chromatin properties and influence genome folding
    • Diesinger P.M., Heermann D.W. Depletion effects massively change chromatin properties and influence genome folding. Biophys. J. 2009, 97(8):2146-2153. 10.1016/j.bpj.2009.06.057.
    • (2009) Biophys. J. , vol.97 , Issue.8 , pp. 2146-2153
    • Diesinger, P.M.1    Heermann, D.W.2
  • 17
    • 77950455981 scopus 로고    scopus 로고
    • Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament
    • Wiggins P.A., Cheveralls K.C., Martin J.S., Lintner R., Kondev J. Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament. Proc. Natl. Acad. Sci. U. S. A. 2010, 107(11):4991-4995. 10.1073/pnas.0912062107.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , Issue.11 , pp. 4991-4995
    • Wiggins, P.A.1    Cheveralls, K.C.2    Martin, J.S.3    Lintner, R.4    Kondev, J.5
  • 18
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • Dekker J., Rippe K., Dekker M., Kleckner N. Capturing chromosome conformation. Science 2002, 295(5558):1306-1311. 10.1126/science.1067799.
    • (2002) Science , vol.295 , Issue.5558 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 19
    • 34548565667 scopus 로고    scopus 로고
    • Quantitative analysis of chromosome conformation capture assays (3c-qpcr)
    • Hagege H., Klous P., Braem C., Splinter E., Dekker J., Cathala G., de Laat W., Forne T. Quantitative analysis of chromosome conformation capture assays (3c-qpcr). Nat. Protoc. 2007, 2(7):1722-1733. URL http://dx.doi.org/10.1038/nprot.2007.243.
    • (2007) Nat. Protoc. , vol.2 , Issue.7 , pp. 1722-1733
    • Hagege, H.1    Klous, P.2    Braem, C.3    Splinter, E.4    Dekker, J.5    Cathala, G.6    de Laat, W.7    Forne, T.8
  • 22
    • 76149088456 scopus 로고    scopus 로고
    • Mapping genomes in 3d
    • Rusk N. Mapping genomes in 3d. Nat. Methods 2010, 7(1):35. URL http://dx.doi.org/10.1038/nmeth.f.286.
    • (2010) Nat. Methods , vol.7 , Issue.1 , pp. 35
    • Rusk, N.1
  • 23
    • 80355130040 scopus 로고    scopus 로고
    • Associated chromosome trap for identifying long-range dna interactions
    • Ling J., Hoffman A.R. Associated chromosome trap for identifying long-range dna interactions. J. Vis. Exp. 2011, 50:e2621. 10.3791/2621.
    • (2011) J. Vis. Exp. , vol.50
    • Ling, J.1    Hoffman, A.R.2
  • 26
    • 77952936833 scopus 로고    scopus 로고
    • Chromatin dynamics
    • Hubner M.R., Spector D.L. Chromatin dynamics. Annu. Rev. Biophys. 2010, 39:471-489. 10.1146/annurev.biophys.093008.131348.
    • (2010) Annu. Rev. Biophys. , vol.39 , pp. 471-489
    • Hubner, M.R.1    Spector, D.L.2
  • 27
    • 85029419605 scopus 로고    scopus 로고
    • Expression-dependent folding of interphase chromatin, PLoS One
    • H. Jerabek, D. W. Heermann, Expression-dependent folding of interphase chromatin, PLoS One.
    • Jerabek, H.1    Heermann, D.W.2
  • 28
    • 33846283384 scopus 로고    scopus 로고
    • Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
    • Lanctot C., Cheutin T., Cremer M., Cavalli G., Cremer T. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat. Rev. Genet. 2007, 8(2):104-115. 10.1038/nrg2041.
    • (2007) Nat. Rev. Genet. , vol.8 , Issue.2 , pp. 104-115
    • Lanctot, C.1    Cheutin, T.2    Cremer, M.3    Cavalli, G.4    Cremer, T.5
  • 29
    • 79251574319 scopus 로고    scopus 로고
    • Repulsive forces between looping chromosomes induce entropy-driven segregation
    • Bohn M., Heermann D.W. Repulsive forces between looping chromosomes induce entropy-driven segregation. PLoS One 2011, 6(1):e14428. 10.1371/journal.pone.0014428.
    • (2011) PLoS One , vol.6 , Issue.1
    • Bohn, M.1    Heermann, D.W.2
  • 30
    • 33646729244 scopus 로고    scopus 로고
    • Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
    • Branco M.R., Pombo A. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol. 2006, 4(5):e138. URL http://dx.doi.org/10.13712Fjournal.pbio.0040138. 10.1371/journal.pbio.0040138.
    • (2006) PLoS Biol. , vol.4 , Issue.5
    • Branco, M.R.1    Pombo, A.2
  • 31
    • 79952280910 scopus 로고    scopus 로고
    • Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes
    • Finan K., Cook P.R., Marenduzzo D. Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes. Chromosome Res. 2011, 19(1):53-61. 10.1007/s10577-010-9150-y.
    • (2011) Chromosome Res. , vol.19 , Issue.1 , pp. 53-61
    • Finan, K.1    Cook, P.R.2    Marenduzzo, D.3
  • 32
    • 77954719357 scopus 로고    scopus 로고
    • Entropy as the driver of chromosome segregation
    • Jun S., Wright A. Entropy as the driver of chromosome segregation. Nat. Rev. Microbiol. 2010, 8(8):600-607. 10.1038/nrmicro2391.
    • (2010) Nat. Rev. Microbiol. , vol.8 , Issue.8 , pp. 600-607
    • Jun, S.1    Wright, A.2
  • 33
    • 70349944662 scopus 로고    scopus 로고
    • Entropic organization of interphase chromosomes
    • Cook P.R., Marenduzzo D. Entropic organization of interphase chromosomes. J. Cell Biol. 2009, 186(6):825-834. 10.1083/jcb.200903083.
    • (2009) J. Cell Biol. , vol.186 , Issue.6 , pp. 825-834
    • Cook, P.R.1    Marenduzzo, D.2
  • 34
    • 0037974405 scopus 로고    scopus 로고
    • Entropy loss in long-distance dna looping
    • Hanke A., Metzler R. Entropy loss in long-distance dna looping. Biophys. J. 2003, 85(1):167-173. 10.1016/S0006-3495(03)74463-4.
    • (2003) Biophys. J. , vol.85 , Issue.1 , pp. 167-173
    • Hanke, A.1    Metzler, R.2
  • 35
    • 75749147065 scopus 로고    scopus 로고
    • Topological interactions between ring polymers: implications for chromatin loops
    • Bohn M., Heermann D.W. Topological interactions between ring polymers: implications for chromatin loops. J. Chem. Phys. 2010, 132(4):044904. 10.1063/1.3302812.
    • (2010) J. Chem. Phys. , vol.132 , Issue.4 , pp. 044904
    • Bohn, M.1    Heermann, D.W.2
  • 36
    • 72449158408 scopus 로고    scopus 로고
    • Topological and entropic repulsion in biopolymers
    • Marenduzzo D., Orlandini E. Topological and entropic repulsion in biopolymers. J. Stat. Mech. Theory Exp. 2009, 2009(09):L09002. URL http://stacks.iop.org/1742-5468/2009/i=09/a=L09002.
    • (2009) J. Stat. Mech. Theory Exp. , vol.2009 , Issue.9
    • Marenduzzo, D.1    Orlandini, E.2
  • 37
    • 0000610880 scopus 로고    scopus 로고
    • Entropic attraction and repulsion in binary colloids probed with a line optical tweezer
    • Crocker J.C., Matteo J.A., Dinsmore A.D., Yodh A.G. Entropic attraction and repulsion in binary colloids probed with a line optical tweezer. Phys. Rev. Lett. 1999, 82:4352-4355. URL http://link.aps.org/doi/10.1103/PhysRevLett.82.4352. 10.1103/PhysRevLett.82.4352.
    • (1999) Phys. Rev. Lett. , vol.82 , pp. 4352-4355
    • Crocker, J.C.1    Matteo, J.A.2    Dinsmore, A.D.3    Yodh, A.G.4
  • 38
    • 33747615506 scopus 로고    scopus 로고
    • Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome
    • Jun S., Mulder B. Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome. Proc. Natl. Acad. Sci. U. S. A. 2006, 103(33):12388-12393. 10.1073/pnas.0605305103.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , Issue.33 , pp. 12388-12393
    • Jun, S.1    Mulder, B.2
  • 39
    • 84455173322 scopus 로고    scopus 로고
    • Loops determine the mechanical properties of mitotic chromosomes
    • Zhang Y., Heermann D.W. Loops determine the mechanical properties of mitotic chromosomes. PLoS One 2011, 6(12):e29225. URL http://dx.doi.org/10.13712Fjournal.pone.0029225. 10.1371/journal.pone.0029225.
    • (2011) PLoS One , vol.6 , Issue.12
    • Zhang, Y.1    Heermann, D.W.2
  • 42
    • 84855297335 scopus 로고    scopus 로고
    • A decade of 3c technologies: insights into nuclear organization
    • de Wit E., de Laat W. A decade of 3c technologies: insights into nuclear organization. Genes Dev. 2012, 26(1):11-24.
    • (2012) Genes Dev. , vol.26 , Issue.1 , pp. 11-24
    • de Wit, E.1    de Laat, W.2
  • 43
    • 79956064734 scopus 로고    scopus 로고
    • Chromatin: constructing the big picture
    • van Steensel B. Chromatin: constructing the big picture. EMBO J. 2011, 30(10):1885-1895. 10.1038/emboj.2011.135.
    • (2011) EMBO J. , vol.30 , Issue.10 , pp. 1885-1895
    • van Steensel, B.1
  • 44
    • 77957867310 scopus 로고    scopus 로고
    • Diffusion-driven looping provides a consistent framework for chromatin organization
    • Bohn M., Heermann D.W. Diffusion-driven looping provides a consistent framework for chromatin organization. PLoS One 2010, 5(8):e12218. 10.1371/journal.pone.0012218.
    • (2010) PLoS One , vol.5 , Issue.8
    • Bohn, M.1    Heermann, D.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.