Integrated platform for proteome profiling with combination of microreversed phase based protein and peptide separation via online solvent exchange and protein digestion

Analytical Chemistry

Volumn 84, Issue 11, 2012, Pages 5124-5132

  Yuan, Huiming ^a   Zhou, Yuan ^a,b   Xia, Simin ^a,b   Zhang, Lihua ^a   Zhang, Xiaodan ^a   Wu, Qi ^a,b   Liang, Zhen ^a   Zhang, Yukui ^a  

^a DALIAN INSTITUTE OF CHEMICAL PHYSICS   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS TIME; HIGH-THROUGHPUT; HOLLOW FIBER MEMBRANES; INTEGRATED PLATFORM; ION CHROMATOGRAM; MICRO-REACTOR; OFFLINE; ON-LINE DIGESTION; PEPTIDE SEPARATION; PH ADJUSTMENT; PHASE BASED; PROTEIN DIGESTION; PROTEIN SEPARATIONS; PROTEIN SEQUENCES; PROTEOME PROFILING; PROTEOMES; RAT BRAIN; SIGNAL INTENSITIES; SOLVENT EXCHANGES; TANDEM MASS SPECTROMETRY;

ACETONITRILE; CHROMATOGRAPHIC ANALYSIS; ELECTROSPRAY IONIZATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PEPTIDES; SEPARATION;

INTEGRATION;

ACETONITRILE; ACETONITRILE DERIVATIVE; PROTEOME; SOLVENT; TRYPSIN;

ANIMAL; ARTICLE; BRAIN LEVEL; CATTLE; CHEMISTRY; FRACTIONATION; HIGH THROUGHPUT SCREENING; HORSE; LABORATORY AUTOMATION; METHODOLOGY; PH; PROTEIN DEGRADATION; RAT; REVERSED PHASE LIQUID CHROMATOGRAPHY; TANDEM MASS SPECTROMETRY;

ACETONITRILES; ANIMALS; AUTOMATION, LABORATORY; BRAIN CHEMISTRY; CATTLE; CHEMICAL FRACTIONATION; CHROMATOGRAPHY, REVERSE-PHASE; HIGH-THROUGHPUT SCREENING ASSAYS; HORSES; HYDROGEN-ION CONCENTRATION; PROTEOLYSIS; PROTEOME; RATS; SOLVENTS; TANDEM MASS SPECTROMETRY; TRYPSIN;

EID: 84861895091     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac3006796     Document Type: Article

References (35)

1. Tao, D. Y.; Qiao, X. Q.; Sun, L. L.; Hou, C. Y.; Gao, L.; Zhang, L. H.; Shan, Y. C.; Liang, Z.; Zhang, Y. K. J. Proteome Res. 2011, 10, 732-738
2. Lau, E.; Lam, M. P. Y.; Siu, S. O.; Kong, R. P. W.; Chan, W. L.; Zhou, Z. L.; Huang, J. R.; Lo, C.; Chu, I. K. Mol. Biosys. 2011, 7, 1399-1408
3. Donato, P.; Cacciola, F.; Sommelia, E.; Fanali, C.; Dugo, L.; Dacha, M.; Campiglia, P.; Novellino, E.; Dugo, P.; Mondello, L. Anal. Chem. 2011, 83 (7) 2485-2491
4. Deng, W. J.; Nie, S.; Dai, J.; Wu, J. R.; Zeng, R. Mol. Cell. Proteomics 2010, 9, 100-116
5. Fang, X.; Yang, L.; Wang, W.; Song, T.; Lee, C. S.; Devoe, D. L.; Balgley, B. M. C. Anal. Chem. 2007, 79, 5785-5792
6. Tao, D. Y.; Sun, L. L.; Zhu, G. J.; Liang, Y.; Liang, Z.; Zhang, L. H.; Zhang, Y. K. J. Sep. Sci. 2011, 34, 83-89
7. Martosella, J.; Zolotarjova, N.; Liu, H. B.; Nicol, G.; Boyes, B. E. J. Proteome Res. 2005, 4, 1522-1537
8. Gao, M. X.; Zhang, J.; Deng, C. H.; Yang, P. Y.; Zhang, X. M. J. Proteome Res. 2006, 5, 2853-2860
9. Choi, H.; Lee, S. K.; Kwon, K. H.; Yoo, J. S.; Ji, K.; Kim, J. Y. Bull. Kor. Chem. Soc. 2011, 32, 599-604
10. Lopez-Ferrer, D.; Petritis, K.; Robinson, E. W.; Hixson, K. K.; Tian, Z. X.; Lee, J. H.; Lee, S. W.; Tolic, N.; Weitz, K. K.; Belov, M. E.; Smith, R. D.; Pasa-Tolic, L. Mol. Cell. Proteomics 2011, 10 M110.001479
11. Vaezzadeh, A. R.; Deshusses, J. M. P.; Waridel, P.; Francois, P.; Zimmermann-Ivol, C. G.; Lescuyer, P.; Schrenzel, J.; Hochstrasser, D. F. J. Microbiol. Meth. 2010, 80, 56-62
12. Wang, S.; Bao, H. M.; Zhang, L. Y.; Yang, P. Y.; Chen, G. Anal. Chem. 2008, 80, 5640-5647
13. Bao, H. M.; Liu, T.; Chen, X.; Chen, G. J. Proteome Res. 2008, 7, 5339-5344
14. Yao, G. P.; Deng, C. H.; Zhang, X. M.; Yang, P. Y. Angew. Chem. Int. Ed. 2010, 122, 8361-8365
15. Ma, J. F.; Hou, C. Y.; Liang, Y.; Wang, T. T.; Liang, Z.; Zhang, L. H.; Zhang, Y. K. Proteomics 2011, 11, 991-995
16. Yamaguchi, H.; Miyazaki, M.; Honda, T.; Briones-Nagata, M. P.; Arima, K.; Maeda, H. Electrophoresis 2009, 30, 3257-3264
17. Wu, S. B.; Sun, L. L.; Ma, J. F.; Yang, K. G.; Liang, Z.; Zhang, L. H.; Zhang, Y. K. Talanta 2011, 83, 1748-1753
18. Spross, J.; Sinz, A. Anal. Chem. 2010, 82, 1434-1443
19. Wei, L. M.; Zhang, W.; Lu, H. J.; Yang, P. Y. Talanta 2010, 80, 1298-1304
20. Cingoz, A.; Hugon-Chapuis, F.; Pichon, V. J. Chromatogr. B 2010, 878, 213-221
21. Geiser, L.; Eeltink, S.; Svec, F.; Frechet, J. M. J. J. Chromatogr. A 2008, 1188, 88-96
22. Li, Y. H.; Wojcik, R.; Dovichi, N. J. J. Chromatogr. A 2011, 1218, 2007-2011
23. Yuan, H. M.; Zhou, Y.; Zhang, L. H.; Liang, Z.; Zhang, Y. K. J. Chromatogr. A 2009, 1216, 7478-7482
24. Yuan, H. M.; Zhang, L. H.; Hou, C. Y.; Zhu, G. J.; Tao, D. Y.; Liang, Z.; Zhang, Y. K. Anal. Chem. 2009, 81, 8708-8714
25. Dowell, J. A.; Frost, D. C.; Zhang, J.; Li, L. J. Anal. Chem. 2008, 80, 6715-6723
26. Slysz, G. W.; Schriemer, D. C. Anal. Chem. 2005, 77, 1572-1579
27. Sun, L. L.; Duan, J. C.; Tao, D. Y.; Liang, Z.; Zhang, W. B.; Zhang, L. H.; Zhang, Y. K. Rapid Commun. Mass. Spec. 2008, 22, 2391-2397
28. Sun, L. L.; Ma, J. F.; Qiao, X. Q.; Tao, D. Y.; Zhang, Y. Y.; Shan, Y. C.; Liang, Z.; Zhang, L. H.; Zhang, Y. K. Anal. Chem. 2010, 82, 2574-2579
29. Ma, J. F.; Liu, J. X.; Sun, L. L.; Gao, L.; Liang, Z.; Zhang, L. H.; Zhang, Y. K. Anal. Chem. 2009, 81, 6534-6540
30. Xu, L.; Sun, Y. J. Chromatogr. A 2008, 1183, 129-134
31. Wang, L. H.; Li, D. Q.; Fu, Y.; Wang, H. P.; Zhang, J. F.; Yuan, Z. F.; Sun, R. X.; Zeng., R.; He, S. M.; Gao, W. Rapid Commun. Mass. Spec. 2007, 21, 2985-2991
32. Dong, J.; Yu, L.; Zhang, X. L.; Xue, X. Y.; Guo, Z. M.; Liang, X. M. Anal. Bioanal. Chem. 2011, 399, 3415-3421
33. Duan, J. C.; Liang, Z.; Yang, C.; Zhang, J.; Zhang, L. H.; Zhang, W. B.; Zhang, Y. K. Proteomics 2006, 6, 412-419
34. Liang, Y.; Tao, D. Y.; Ma, J. F.; Sun, L. L.; Liang, Z.; Zhang, L. H.; Zhang, Y. K. J. Chromatogr. A 2011, 1218, 2898-2905
35. Ma, J. F.; Liang, Z.; Qiao, X. Q.; Deng, Q. L.; Tao, D. Y.; Zhang, L. H.; Zhang, Y. K. Anal. Chem. 2008, 80, 2949-2956