Genome-wide analysis of cytosolic and chloroplastic isoforms of glutathione reductase in plant cells

Plant OMICS

Volumn 5, Issue 2, 2012, Pages 94-102

  Tahmasebi, Ahmad ^a   Aram, Farzaneh ^a   Ebrahimi, Mansour ^b   Mohammadi Dehcheshmeh, Manijeh ^c   Ebrahimie, Esmaeil ^a,c  

^a SHIRAZ UNIVERSITY   (Iran)

^b UNIVERSITY OF QOM   (Iran)

^c UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Bioinformatics; Cytosolic domain; EST; Signal peptide; Subcellular location

Indexed keywords

DICOTYLEDONEAE;

EID: 84861830797     PISSN: 18360661     EISSN: 18363644     Source Type: Journal    
DOI: None     Document Type: Article

References (35)

1. Anderson JV, Chevone BI, Hess JL (1992) Seasonal variation in the antioxidant system of eastern white pine needles: evidence for thermal dependence. Plant Physiol 98: 501-508
2. Ashrafi E, Alemzadeh A, Ebrahimi M, Ebrahimie E, Dadkhodaei N, Ebrahimi M (2011) Determining specific amino acid features in P1B-ATPase heavy metals transporters which provides a unique ability in small number of organisms to cope with heavy metal pollution. Bioinf Biol Insights 5: 59-82
3. Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: 202-208
4. Belmonte MF, Stasolla C (2009) Altered HBK3 expression affects glutathione and ascorbate metabolism during the early phases of Norway spruce (Picea abies) somatic embryogenesis. Plant Physiol Bioch 47: 904-911
5. Bhatnagar-Mathur P, Devi MJ, Vadez V, Sharma KK (2009) Differential antioxidative responses in transgenic peanut bear no relationship to their superior transpiration efficiency under drought stress. J Plant Physiol 166: 1207-1217
6. Chew O, Whelan J, Millar AH (2003) Molecular definition of the ascorbate-glutathione cycle in Arabidopsis mitochondria reveals dual targeting of antioxidant defenses in plants. J Biol Chem 278: 46869-46877
7. Contour-Ansel D, Torres-Franklin ML, Cruz De CMH, D'Arcy-Lameta A, Zuily-Fodil Y (2006) Glutathione reductase in leaves of cowpea: cloning of two cDNAs, expression and enzymatic activity under progressive drought stress, desiccation and abscisic acid treatment. Ann Bot 98: 1279-1287
8. Creissen G, Edwards EA, Enard C, Wellburn A, Mullineaux P (1992) Molecular characterization of glutathione reductase cDNAs from pea (Pisum sativum L.). Plant J 2: 129-131
9. Creissen GP, Mullineaux PM (1995) Cloning and characterisation of glutathione reductase cDNAs and identification of two genes encoding the tobacco enzyme. Planta Med 197: 422-425
10. Dalkin K, Edwards R, Edington B, Dixon RA (1990) Stress responses in Alfalfa (Medicago sativa L.): I. induction of phenylpropanoid biosynthesis and hydrolytic enzymes in elicitor-treated cell suspension cultures. Plant Physiol 92: 440-446
11. Drumm-Herrel H, Gerhausser U, Mohr H (1989) Differential regulation by phytochrome of the appearance of plastidic and cytoplasmatic isoforms of glutathione reductase in mustard (Sinapis alba L.) cotyledons. Planta Med 178: 103-109
12. Ebrahimi M, Ebrahimie E (2010) Sequence-based prediction of enzyme thermostability through bioinformatics algorithms. Curr Bioinform 5: 195-203
13. Ebrahimi M, Ebrahimie E, Ebrahimi M (2009) Searching for patterns of thermostability in proteins and defining the main features contributing to enzyme thermostability through screening, clustering, and decision tree alogorithms. Excli J 8: 218-233
14. Ebrahimi M, Lakizadeh A, Agha-Golzadeh P, Ebrahimie E, Ebrahimi M (2011) Prediction of thermostability from Amino Acid Attributes by combination of clustering with attribute weighting: a new vista in engineering enzymes. Plos One 6: e23146
15. Ebrahimie E, Ebrahimi M, Sarvestani NR, Ebrahimi M (2011) Protein attributes contribute to halo-stability, bioinformatics approach. Saline Systems 7:1
16. Edwards EA, Enard C, Creissen GP, Mullineaux PM (1994) Synthesis and properties of glutathione reductase in stressed peas. Planta Med 192: 137-143
17. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791
18. Fink RC, Scandalios JG (2002) Molecular evolution and structure-function relationships of the superoxide dismutase gene families in angiosperms and their relationship to other eukaryotic and prokaryotic superoxide dismutases. Arch Biochem Biophys 399: 19-36
19. Foyer C, Lelandais M, Galap C, Kunert KJ (1991) Effects of elevated cytosolic glutathione reductase activity on the cellular glutathione pool and photosynthesis in leaves under normal and stress conditions. Plant Physiol 97: 863-872
20. Fridovich I (1975) Superoxide dismutases. Annu Rev Biochem 44: 147-159
21. Gadea J, Conejero V, Vera P (1999) Developmental regulation of a cytosolic ascorbate peroxidase gene from tomato plants. Mol Gen Genet 262: 212-219
22. Giacomelli L, Masi A, Ripoll DR, Lee MJ, Van Wijk KJ (2007) Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low. Plant Mol Biol 65: 627-644
23. Hyun T, Eom S, Kim J (2011) Genomic analysis and gene structure of the two invertase families in the domesticated apple (Malus × domestica Borkh.) Plant Omics J 4:391-399
24. Kaminaka H, Morita S, Nakajima M, Masumura T, Tanaka K (1998) Gene cloning and expression of cytosolic glutathione reductase in rice (Oriza sativa L.). Plant Cell Physiol 39: 1269-1280
25. Karuppanapandian T, Moon J, Kim Ch, Manoharan K, Kim W (2011) Reactive oxygen species in plants: their generation, signal transduction, and scavenging mechanisms. Aust J Crop Sci 5:709-725
26. Meister A, Anderson ME (1983) Glutathione. Annu Rev Biochem 52: 711-760
27. Nakashima H, Nishikawa K (1994) Discrimination of intracellular and extracellular proteins using amino-acidcomposition and residue-pair frequencies. J Mol Biol 238: 54-61
28. Romero-Puertas MC, Corpas FJ, Sandalio LM, Leterrier M, Rodriguez-Serrano M, Del Rio LA, Palma JM (2006) Glutathione reductase from pea leaves: response to abiotic stress and characterization of the peroxisomal isozyme. New Phytol 170:43-52
29. Rost B (2001) Review: protein secondary structure prediction continues to rise. J Struct Biol 134:204-218
30. Roy S, Maheshwari N, Chauhan R, Sen NK, Sharma A (2011) Structure prediction and functional characterization of secondary metabolite proteins of Ocimum. Bioinformation 6: 315-319
31. Tahrokh E, Ebrahimi M, Ebrahimi M, Zamansani F, Sarvestani NR, Mohammadi-Dehcheshmeh M, Ghaemi MR, Esmaeil Ebrahimie (2011) Comparative study of ammonium transporters in different organisms by study of a large number of structural protein features via data mining algorithms. Genes Genom 33: 561-571
32. Tarrago L, Laugier E, Zaffagnini M, Marchand C, Le Marechal P, Rouhier N, Lemaire SD, Rey P (2009) Regeneration mechanisms of Arabidopsis thaliana methionine sulfoxide reductases B by glutaredoxins and thioredoxins. J Biol Chem 284: 18963-18971
33. Wu G, Nie L, Zhang W (2006) Predicted highly expressed genes in Nocardia farcinica and the implication for its primary metabolism and nocardial virulence. Anton Van Lee 89: 135-146
34. Yoshida A, Noguchi T, Taniguchi S, Mitani Y, Ueda M, Urabe K, Adachi T, Okamura Y, Shigemasa C, Abe K (1986) Receptor dynamics and tyrosine aminotransferase induction during the course of chronic treatment of rats with glucocorticoid. Endocrinol Japon 33: 769-775
35. Zaffagnini M, Michelet L, Massot V, Trost P, Lemaire SD (2008) Biochemical characterization of glutaredoxins from Chlamydomonas reinhardtii reveals the unique properties of a chloroplastic CGFS-type glutaredoxin. J Biol Chem 283: 8868-8876