The HIV-1 Nef Protein Interacts with two components of the 40S small ribosomal subunit, the RPS10 protein and the 18S rRNA

Virology Journal

Volumn 9, Issue , 2012, Pages

  Abbas, Wasim ^a   Dichamp, Isabelle ^a   Herbein, Georges ^a  

^a Hôpital Saint Jacques   (France)

Author keywords

18S rRNA; HIV; Nef; Ribosome; RPS10; tRNA

Indexed keywords

NEF PROTEIN; RIBOSOME PROTEIN; RNA 18S; SMALL RIBOSOMAL PROTEIN S10; TRANSFER RNA; UNCLASSIFIED DRUG; NEF PROTEIN, HUMAN IMMUNODEFICIENCY VIRUS 1; RIBOSOMAL PROTEIN S10;

ARTICLE; CONTROLLED STUDY; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; IMMUNOPRECIPITATION; IN VITRO STUDY; LIFE CYCLE; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN SYNTHESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SMALL RIBOSOMAL SUBUNIT; ANIMAL; BIOLOGICAL MODEL; CELL CULTURE; HOST PATHOGEN INTERACTION; METABOLISM; PATHOGENICITY; PROTEIN ANALYSIS;

HUMAN IMMUNODEFICIENCY VIRUS 1;

ANIMALS; CELLS, CULTURED; HIV-1; HOST-PATHOGEN INTERACTIONS; HUMANS; IMMUNOPRECIPITATION; MODELS, BIOLOGICAL; NEF GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RIBOSOMAL PROTEINS; RNA, RIBOSOMAL, 18S;

EID: 84861811714     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-9-103     Document Type: Article

References (30)

1. Recent mechanistic insights into eukaryotic ribosomes. Rodnina MV, Wintermeyer W, Curr Opin Cell Biol 2009 21 435 443 10.1016/j.ceb.2009.01.023 19243929
2. Pre-ribosomes on the road from the nucleolus to the cytoplasm. Tschochner H, Hurt E, Trends Cell Biol 2003 13 255 263 10.1016/S0962-8924(03)00054-0 12742169 (Pubitemid 36556010)
3. A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders. Uechi T, Tanaka T, Kenmochi N, Genomics 2001 72 223 230 10.1006/geno.2000.6470 11401437 (Pubitemid 32281523)
4. Preferential cleavage in pre-ribosomal RNA by protein B23 endoribonuclease. Savkur RS, Olson MO, Nucleic Acids Res 1998 26 4508 4515 10.1093/nar/26.19.4508 9742256 (Pubitemid 28442146)
5. Multiple ribosomal RNA cleavage pathways in mammalian cells. Bowman LH, Rabin B, Schlessinger D, Nucleic Acids Res 1981 9 4951 4966 10.1093/nar/9.19. 4951 7312622
6. A protein inventory of human ribosome biogenesis reveals an essential function of exportin 5 in 60S subunit export. Wild T, Horvath P, Wyler E, Widmann B, Badertscher L, Zemp I, Kozak K, Csucs G, Lund E, Kutay U, PLoS Biol 2010 8 1000522 10.1371/journal.pbio.1000522 21048991
7. Ribosomal protein S3: a KH domain subunit in NF-kappaB complexes that mediates selective gene regulation. Wan F, Anderson DE, Barnitz RA, Snow A, Bidere N, Zheng L, Hegde V, Lam LT, Staudt LM, Levens D, Deutsch WA, Lenardo MJ, Cell 2007 131 927 939 10.1016/j.cell.2007.10.009 18045535 (Pubitemid 350138085)
8. How common are extraribosomal functions of ribosomal proteins? Warner JR, McIntosh KB, Mol Cell 2009 34 3 11 10.1016/j.molcel.2009.03.006 19362532
9. Methylation of ribosomal protein S10 by protein-arginine methyltransferase 5 regulates ribosome biogenesis. Ren J, Wang Y, Liang Y, Zhang Y, Bao S, Xu Z, J Biol Chem 2010 285 12695 12705 10.1074/jbc.M110.103911 20159986
10. Ribosomal protein genes RPS10 and RPS26 are commonly mutated in Diamond-Blackfan anemia. Doherty L, Sheen MR, Vlachos A, Choesmel V, O'Donohue MF, Clinton C, Schneider HE, Sieff CA, Newburger PE, Ball SE, Niewiadomska E, Matysiak M, Glader B, Arceci RJ, Farrar JE, Atsidaftos E, Lipton JM, Gleizes PE, Gazda HT, Am J Hum Genet 2010 86 222 228 10.1016/j.ajhg.2009.12.015 20116044
11. The spatial arrangement of the complex between eukaryotic initiation factor eIF-3 and 40S ribosomal subunit, Cross-linking between factor and ribosomal proteins. Westermann P, Nygard O, Biochim Biophys Acta 1983 741 103 108 6615839
12. Evidence that ribosomal protein S10 participates in control of transcription termination. Friedman DI, Schauer AT, Baumann MR, Baron LS, Adhya SL, Proc Natl Acad Sci U S A 1981 7 1115 1118 (Pubitemid 11102170)
13. Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex. Luo X, Hsiao HH, Bubunenko M, Weber G, Court DL, Gottesman ME, Urlaub H, Wahl MC, Mol Cell 2008 32 791 802 10.1016/j.molcel.2008. 10.028 19111659
14. RNA polymerase elongation factors. Roberts JW, Shankar S, Filter JJ, Annu Rev Microbiol 2008 62 211 233 10.1146/annurev.micro.61.080706.093422 18729732
15. Proteins shared by the transcription and translation machines. Squires CL, Zaporojets D, Annu Rev Microbiol 2000 54 775 798 10.1146/annurev.micro.54.1. 775 11018144
16. A NusE: NusG complex links transcription and translation. Burmann BM, Schweimer K, Luo X, Wahl MC, Stitt BL, Gottesman ME, Rosch P, Science 2010 328 501 504 10.1126/science.1184953 20413501
17. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, Choesmel V, Faubladier M, Fichant G, Gleizes PE, J Cell Biol 2010 190 853 866 10.1083/jcb.201005117 20819938
18. HIV-1 Nef: at the crossroads. Foster JL, Garcia JV, Retrovirology 2008 5 84 10.1186/1742-4690-5-84 18808677
19. Inhibition of HIV-1 progeny virion release by cell-surface CD4 is relieved by expression of the viral Nef protein. Ross TM, Oran AE, Cullen BR, Curr Biol 1999 9 613 621 10.1016/S0960-9822(99)80283-8 10375525 (Pubitemid 29291941)
20. Immune evasion and counteraction of restriction factors by HIV-1 and other primate lentiviruses. Kirchhoff F, Cell Host Microbe 2010 8 55 67 10.1016/j.chom.2010.06.004 20638642
21. HIV-1 Nef protein protects infected primary cells against killing by cytotoxic T lymphocytes. Collins KL, Chen BK, Kalams SA, Walker BD, Baltimore D, Nature 1998 391 397 401 10.1038/34929 9450757 (Pubitemid 28093515)
22. HIV-1 Nef inhibits ASK1-dependent death signalling providing a potential mechanism for protecting the infected host cell. Geleziunas R, Xu W, Takeda K, Ichijo H, Greene WC, Nature 2001 410 834 838 10.1038/35071111 11298454 (Pubitemid 32303784)
23. Resistance to apoptosis in HIV-infected CD4+ T lymphocytes is mediated by macrophages: role for Nef and immune activation in viral persistence. Mahlknecht U, Deng C, Lu MC, Greenough TC, Sullivan JL, O'Brien WA, Herbein G, J Immunol 2000 165 6437 6446 11086083
24. Macrophage signaling in HIV-1 infection. Herbein G, Gras G, Khan KA, Abbas W, Retrovirology 2010 7 34 10.1186/1742-4690-7-34 20380698
25. T-tropic human immunodeficiency virus (HIV) type 1 Nef protein enters human monocyte-macrophages and induces resistance to HIV replication: a possible mechanism of HIV T-tropic emergence in AIDS. Alessandrini L, Santarcangelo AC, Olivetta E, Ferrantelli F, D'Aloja P, Pugliese K, Pelosi E, Chelucci C, Mattia G, Peschle C, Verani P, Federico M, J Gen Virol 2000 81 2905 2917 11086122 (Pubitemid 32000638)
26. Exogenous Nef protein activates NF-kappa B, AP-1, and c-Jun N-terminal kinase and stimulates HIV transcription in promonocytic cells. Role in AIDS pathogenesis. Varin A, Manna SK, Quivy V, Decrion AZ, Van Lint C, Herbein G, Aggarwal BB, J Biol Chem 2003 278 2219 2227 10.1074/jbc.M209622200 12419805 (Pubitemid 36801289)
27. Human immunodeficiency virus (HIV) Nef is an RNA binding protein in cell-free systems. Echarri A, Gonzalez ME, Carrasco L, J Mol Biol 1996 262 640 651 10.1006/jmbi.1996.0542 8876644 (Pubitemid 26343512)
28. Analysis of RNA-protein complexes by RNA coimmunoprecipitation and RT-PCR analysis from Caenorhabditis elegans. Jedamzik B, Eckmann CR, Cold Spring Harb Protoc 2009 4 5300
29. Primer tRNAs for reverse transcription. Mak J, Kleiman L, J Virol 1997 71 8087 8095 9343157 (Pubitemid 27446382)
30. Synthetic Vpr protein activates activator protein-1, c-Jun N-terminal kinase, and NF-kappaB and stimulates HIV-1 transcription in promonocytic cells and primary macrophages. Varin A, Decrion AZ, Sabbah E, Quivy V, Sire J, Van Lint C, Roques BP, Aggarwal BB, Herbein G, J Biol Chem 2005 280 42557 42567 10.1074/jbc.M502211200 16243842 (Pubitemid 43049213)