-
1
-
-
30344475502
-
Streptococcus pneumoniae: Epidemiology, risk factors, and clinical features
-
DOI 10.1055/s-2005-925523
-
Ortqvist, A., Hedlund, J., and Kalin, M. (2005) Streptococcus pneumoniae: epidemiology, risk factors, and clinical features. Semin. Respir. Crit. Care Med. 26, 563-574 (Pubitemid 43063071)
-
(2005)
Seminars in Respiratory and Critical Care Medicine
, vol.26
, Issue.6
, pp. 563-574
-
-
Ortqvist, A.1
Hedlund, J.2
Kalin, M.3
-
2
-
-
33645966214
-
Severe sepsis in communityacquired pneumonia: When does it happen, and do systemic inflammatory response syndrome criteria help predict course?
-
Dremsizov, T., Clermont, G., Kellum, J. A., Kalassian, K. G., Fine, M. J., and Angus, D. C. (2006) Severe sepsis in communityacquired pneumonia: when does it happen, and do systemic inflammatory response syndrome criteria help predict course? Chest 129, 968-978
-
(2006)
Chest
, vol.129
, pp. 968-978
-
-
Dremsizov, T.1
Clermont, G.2
Kellum, J.A.3
Kalassian, K.G.4
Fine, M.J.5
Angus, D.C.6
-
3
-
-
0028889934
-
A five-year study of severe community-acquired pneumonia with emphasis on prognosis in patients admitted to an intensive care unit
-
Leroy, O., Santre, C., Beuscart, C., Georges, H., Guery, B., Jacquier, J. M., and Beaucaire, G. (1995) A five-year study of severe community-acquired pneumonia with emphasis on prognosis in patients admitted to an intensive care unit. Intensive Care Med. 21, 24-31
-
(1995)
Intensive Care Med.
, vol.21
, pp. 24-31
-
-
Leroy, O.1
Santre, C.2
Beuscart, C.3
Georges, H.4
Guery, B.5
Jacquier, J.M.6
Beaucaire, G.7
-
4
-
-
0029144668
-
Severe community-acquired pneumococcal pneumonia
-
The French Study Group of Community-Acquired Pneumonia in ICU
-
Moine, P., Vercken, J. B., Chevret, S., and Gajdos, P. (1995) Severe community-acquired pneumococcal pneumonia. The French Study Group of Community-Acquired Pneumonia in ICU. Scand. J. Infect. Dis. 27, 201-206
-
(1995)
Scand. J. Infect. Dis.
, vol.27
, pp. 201-206
-
-
Moine, P.1
Vercken, J.B.2
Chevret, S.3
Gajdos, P.4
-
5
-
-
0036790034
-
Severe community-acquired pneumonia
-
Ewig, S., and Torres, A. (2002) Severe community-acquired pneumonia. Curr. Opin. Crit. Care 8, 453-460
-
(2002)
Curr. Opin. Crit. Care
, vol.8
, pp. 453-460
-
-
Ewig, S.1
Torres, A.2
-
6
-
-
0037086365
-
Hospitalized community-acquired pneumonia in the elderly: Age- and sex-related patterns of care and outcome in the United States
-
Kaplan, V., Angus, D. C., Griffin, M. F., Clermont, G., Scott Watson, R., and Linde-Zwirble, W. T. (2002) Hospitalized community-acquired pneumonia in the elderly: age- and sexrelated patterns of care and outcome in the United States. Amer. J. Respir. Crit. Care Med. 165, 766-772 (Pubitemid 34229645)
-
(2002)
American Journal of Respiratory and Critical Care Medicine
, vol.165
, Issue.6
, pp. 766-772
-
-
Kaplan, V.1
Angus, D.C.2
Griffin, M.F.3
Clermont, G.4
Scott, W.R.5
Linde-Zwirble, W.T.6
-
7
-
-
0025783392
-
Pathogenesis of pneumococcal pneumonia
-
Johnston, R. B., Jr. (1991) Pathogenesis of pneumococcal pneumonia. Rev. Infect. Dis. 13(Suppl. 6), S509-S517
-
(1991)
Rev. Infect. Dis.
, vol.13
, Issue.SUPPL. 6
-
-
Johnston Jr., R.B.1
-
8
-
-
0029346874
-
Participation of pulmonary alveolar epithelial cells in lung inflammation
-
Simon, R. H., and Paine, R., 3rd (1995) Participation of pulmonary alveolar epithelial cells in lung inflammation. J. Lab. Clin. Med. 126, 108-118
-
(1995)
J. Lab. Clin. Med.
, vol.126
, pp. 108-118
-
-
Simon, R.H.1
Paine III, R.2
-
9
-
-
0029641963
-
Pathogenesis of pneumococcal infection
-
Tuomanen, E. I., Austrian, R., and Masure, H. R. (1995) Pathogenesis of pneumococcal infection. New Engl. J. Med. 332, 1280-1284
-
(1995)
New Engl. J. Med.
, vol.332
, pp. 1280-1284
-
-
Tuomanen, E.I.1
Austrian, R.2
Masure, H.R.3
-
10
-
-
0024602827
-
Tissue destruction by neutrophils
-
Weiss, S. J. (1989) Tissue destruction by neutrophils. New Engl. J. Med. 320, 365-376
-
(1989)
New Engl. J. Med.
, vol.320
, pp. 365-376
-
-
Weiss, S.J.1
-
11
-
-
0031912785
-
Cytokine kinetics and other host factors in response to pneumococcal pulmonary infection in mice
-
Bergeron, Y., Ouellet, N., Deslauriers, A. M., Simard, M., Olivier, M., and Bergeron, M. G. (1998) Cytokine kinetics and other host factors in response to pneumococcal pulmonary infection in mice. Infect. Immun. 66, 912-922 (Pubitemid 28101126)
-
(1998)
Infection and Immunity
, vol.66
, Issue.3
, pp. 912-922
-
-
Bergeron, Y.1
Ouellet, N.2
Deslauriers, A.-M.3
Simard, M.4
Olivier, M.5
Bergeron, M.G.6
-
12
-
-
0025819355
-
A model of pneumococcal pneumonia in chronically intoxicated rats
-
Davis, C. C., Mellencamp, M. A., and Preheim, L. C. (1991) A model of pneumococcal pneumonia in chronically intoxicated rats. J. Infect. Dis. 163, 799-805
-
(1991)
J. Infect. Dis.
, vol.163
, pp. 799-805
-
-
Davis, C.C.1
Mellencamp, M.A.2
Preheim, L.C.3
-
13
-
-
0026022817
-
Pneumococcal pneumonia in a rat model of cirrhosis: Effects of cirrhosis on pulmonary defense mechanisms against Streptococcus pneumoniae
-
Mellencamp, M. A., and Preheim, L. C. (1991) Pneumococcal pneumonia in a rat model of cirrhosis: effects of cirrhosis on pulmonary defense mechanisms against Streptococcus pneumoniae. J. Infect. Dis. 163, 102-108
-
(1991)
J. Infect. Dis.
, vol.163
, pp. 102-108
-
-
Mellencamp, M.A.1
Preheim, L.C.2
-
14
-
-
0031022234
-
Role of tumor necrosis factor alpha in pathogenesis of pneumococcal pneumonia in mice
-
Takashima, K., Tateda, K., Matsumoto, T., Iizawa, Y., Nakao, M., and Yamaguchi, K. (1997) Role of tumor necrosis factor alpha in pathogenesis of pneumococcal pneumonia in mice. Infect. Immun. 65, 257-260 (Pubitemid 27008930)
-
(1997)
Infection and Immunity
, vol.65
, Issue.1
, pp. 257-260
-
-
Takashima, K.1
Tateda, K.2
Matsumoto, T.3
Iizawa, Y.4
Nakao, M.5
Yamaguchi, K.6
-
15
-
-
20144387327
-
Application of genome-wide expression analysis to human health and disease
-
DOI 10.1073/pnas.0409768102
-
Cobb, J. P., Mindrinos, M. N., Miller-Graziano, C., Calvano, S. E., Baker, H. V., Xiao, W., Laudanski, K., Brownstein, B. H., Elson, C. M., Hayden, D. L., Herndon, D. N., Lowry, S. F., Maier, R. V., Schoenfeld, D. A., Moldawer, L. L., Davis, R. W., Tompkins, R. G., Baker, H. V., Bankey, P., Billiar, T., Brownstein, B. H., Calvano, S. E., Camp, D., Chaudry, I., Cobb, J. P., Davis, R. W., Elson, C. M., Freeman, B., Gamelli, R., Gibran, N., Harbrecht, B., Hayden, D. L., Heagy, W., Heimbach, D., Herndon, D. N., Horton, J., Hunt, J., Laudanski, K., Lederer, J., Lowry, S. F., Maier, R. V., Mannick, J., McKinley, B., Miller-Graziano, C., Mindrinos, M. N., Minei, J., Moldawer, L. L., Moore, E., Moore, F., Munford, R., Nathens, A., O'Keefe, G., Purdue, G., Rahme, L., Remick, D., Sailors, M., Schoenfeld, D. A., Shapiro, M., Silver, G., Smith, R., Stephanopoulos, G., Stormo, G., Tompkins, R. G., Toner, M., Warren, S., West, M., Wolfe, S., Xiao, W., and Young, V. (2005) Application of genome-wide expression analysis to human health and disease. Proc. Natl. Acad. Sci. U. S. A. 102, 4801-4806 (Pubitemid 40471534)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.13
, pp. 4801-4806
-
-
Cobb, J.P.1
Mindrinos, M.N.2
Miller-Graziano, C.3
Calvano, S.E.4
Baker, H.V.5
Xiao, W.6
Laudanski, K.7
Brownstein, B.H.8
Elson, C.M.9
Hayden, D.L.10
Herndon, D.N.11
Lowry, S.F.12
Maier, R.V.13
Schoenfeld, D.A.14
Moldawer, L.L.15
Davis, R.W.16
Tompkins, R.G.17
-
16
-
-
2942678943
-
Injury research in the genomic era
-
DOI 10.1016/S0140-6736(04)16460-X, PII S014067360416460X
-
Cobb, J. P., and O'Keefe, G. E. (2004) Injury research in the genomic era. Lancet 363, 2076-2083 (Pubitemid 38781112)
-
(2004)
Lancet
, vol.363
, Issue.9426
, pp. 2076-2083
-
-
Cobb, J.P.1
O'Keefe, G.E.2
-
17
-
-
0036162008
-
Functional genomics of critical illness and injury
-
Chung, T. P., Laramie, J. M., Province, M., and Cobb, J. P. (2002) Functional genomics of critical illness and injury. Crit. Care Med. 30, S51-S57 (Pubitemid 34131162)
-
(2002)
Critical Care Medicine
, vol.30
, Issue.1 SUPPL. B
-
-
Chung, T.P.1
Laramie, J.M.2
Province, M.3
Cobb, J.P.4
-
18
-
-
77249111174
-
Sepsis-induced myocardial depression is associated with transcriptional changes in energy metabolism and contractile related genes: A physiological and gene expression-based approach
-
Dos Santos, C. C., Gattas, D. J., Tsoporis, J. N., Smeding, L., Kabir, G., Masoom, H., Akram, A., Plotz, F., Slutsky, A. S., Husain, M., Sibbald, W. J., and Parker, T. G. (2010) Sepsis-induced myocardial depression is associated with transcriptional changes in energy metabolism and contractile related genes: a physiological and gene expression-based approach. Crit. Care Med. 38, 894-902
-
(2010)
Crit. Care Med.
, vol.38
, pp. 894-902
-
-
Dos Santos, C.C.1
Gattas, D.J.2
Tsoporis, J.N.3
Smeding, L.4
Kabir, G.5
Masoom, H.6
Akram, A.7
Plotz, F.8
Slutsky, A.S.9
Husain, M.10
Sibbald, W.J.11
Parker, T.G.12
-
19
-
-
33846017352
-
The nature of systems biology
-
DOI 10.1016/j.tim.2006.11.003, PII S0966842X06002642
-
Bruggeman, F. J., and Westerhoff, H. V. (2007) The nature of systems biology. Trends Microbiol. 15, 45-50 (Pubitemid 46043550)
-
(2007)
Trends in Microbiology
, vol.15
, Issue.1
, pp. 45-50
-
-
Bruggeman, F.J.1
Westerhoff, H.V.2
-
20
-
-
0042665483
-
Immunizations with pneumococcal surface protein A and pneumolysin are protective against pneumonia in a murine model of pulmonary infection with Streptococcus pneumoniae
-
DOI 10.1086/376571
-
Briles, D. E., Hollingshead, S. K., Paton, J. C., Ades, E. W., Novak, L., van Ginkel, F. W., and Benjamin, W. H., Jr. (2003) Immunizations with pneumococcal surface protein A and pneumolysin are protective against pneumonia in a murine model of pulmonary infection with Streptococcus pneumoniae. J. Infect. Dis. 188, 339-348 (Pubitemid 36966099)
-
(2003)
Journal of Infectious Diseases
, vol.188
, Issue.3
, pp. 339-348
-
-
Briles, D.E.1
Hollingshead, S.K.2
Paton, J.C.3
Ades, E.W.4
Novak, L.5
Van Ginkel, F.W.6
Benjamin Jr., W.H.7
-
21
-
-
0033968726
-
Host cellular immune response to pneumococcal lung infection in mice
-
DOI 10.1128/IAI.68.2.492-501.2000
-
Kadioglu, A., Gingles, N. A., Grattan, K., Kerr, A., Mitchell, T. J., and Andrew, P. W. (2000) Host cellular immune response to pneumococcal lung infection in mice. Infect. Immun. 68, 492-501 (Pubitemid 30056499)
-
(2000)
Infection and Immunity
, vol.68
, Issue.2
, pp. 492-501
-
-
Kadioglu, A.1
Gingles, N.A.2
Grattan, K.3
Kerr, A.4
Mitchell, T.J.5
Andrew, P.W.6
-
22
-
-
0035035231
-
The autolytic enzyme lytA of Streptococcus pneumoniae is not responsible for releasing pneumolysin
-
DOI 10.1128/JB.183.10.3108-3116.2001
-
Balachandran, P., Hollingshead, S. K., Paton, J. C., and Briles, D. E. (2001) The autolytic enzyme LytA of Streptococcus pneumoniae is not responsible for releasing pneumolysin. J. Bacteriol. 183, 3108-3116 (Pubitemid 32433528)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.10
, pp. 3108-3116
-
-
Balachandran, P.1
Hollingshead, S.K.2
Paton, J.C.3
Briles, D.E.4
-
24
-
-
79251515144
-
Pneumolysin activates the NLRP3 inflammasome and promotes proinflammatory cytokines independently of TLR4
-
McNeela, E. A., Burke, A., Neill, D. R., Baxter, C., Fernandes, V. E., Ferreira, D., Smeaton, S., El-Rachkidy, R., McLoughlin, R. M., Mori, A., Moran, B., Fitzgerald, K. A., Tschopp, J., Petrilli, V., Andrew, P. W., Kadioglu, A., and Lavelle, E. C. (2010) Pneumolysin activates the NLRP3 inflammasome and promotes proinflammatory cytokines independently of TLR4. PLoS Pathog. 6, e1001191
-
(2010)
PLoS Pathog.
, vol.6
-
-
McNeela, E.A.1
Burke, A.2
Neill, D.R.3
Baxter, C.4
Fernandes, V.E.5
Ferreira, D.6
Smeaton, S.7
El-Rachkidy, R.8
McLoughlin, R.M.9
Mori, A.10
Moran, B.11
Fitzgerald, K.A.12
Tschopp, J.13
Petrilli, V.14
Andrew, P.W.15
Kadioglu, A.16
Lavelle, E.C.17
-
25
-
-
80855127655
-
Pneumolysin with low hemolytic activity confers an early growth advantage to Streptococcus pneumoniae in the blood
-
Harvey, R. M., Ogunniyi, A. D., Chen, A. Y., and Paton, J. C. (2011) Pneumolysin with low hemolytic activity confers an early growth advantage to Streptococcus pneumoniae in the blood. Infect. Immun. 79, 4122-4130
-
(2011)
Infect. Immun.
, vol.79
, pp. 4122-4130
-
-
Harvey, R.M.1
Ogunniyi, A.D.2
Chen, A.Y.3
Paton, J.C.4
-
26
-
-
75749155809
-
Efficacy profiles of daptomycin for treatment of invasive and noninvasive pulmonary infections with Streptococcus pneumoniae
-
Henken, S., Bohling, J., Martens-Lobenhoffer, J., Paton, J. C., Ogunniyi, A. D., Briles, D. E., Salisbury, V. C., Wedekind, D., Bode-Boger, S. M., Welsh, T., Bange, F. C., Welte, T., and Maus, U. A. (2010) Efficacy profiles of daptomycin for treatment of invasive and noninvasive pulmonary infections with Streptococcus pneumoniae. Antimicrob. Agents Chemo. 54, 707-717
-
(2010)
Antimicrob. Agents Chemo.
, vol.54
, pp. 707-717
-
-
Henken, S.1
Bohling, J.2
Martens-Lobenhoffer, J.3
Paton, J.C.4
Ogunniyi, A.D.5
Briles, D.E.6
Salisbury, V.C.7
Wedekind, D.8
Bode-Boger, S.M.9
Welsh, T.10
Bange, F.C.11
Welte, T.12
Maus, U.A.13
-
27
-
-
34247588139
-
Lung-specific overexpression of CC chemokine ligand (CCL) 2 enhances the host defense to Streptococcus pneumoniae infection in mice: Mole of the CCL2-CCR2 axis
-
Winter, C., Taut, K., Srivastava, M., Langer, F., Mack, M., Briles, D. E., Paton, J. C., Maus, R., Welte, T., Gunn, M. D., and Maus, U. A. (2007) Lung-specific overexpression of CC chemokine ligand (CCL) 2 enhances the host defense to Streptococcus pneumoniae infection in mice: role of the CCL2-CCR2 axis. J. Immunol. 178, 5828-5838 (Pubitemid 46674380)
-
(2007)
Journal of Immunology
, vol.178
, Issue.9
, pp. 5828-5838
-
-
Winter, C.1
Taut, K.2
Srivastava, M.3
Langer, F.4
Mack, M.5
Briles, D.E.6
Paton, J.C.7
Maus, R.8
Welte, T.9
Gunn, M.D.10
Maus, U.A.11
-
28
-
-
34247607711
-
Importance of phosphoinositide 3-kinase gamma in the host defense against pneumococcal infection
-
DOI 10.1164/rccm.200610-1533OC
-
Maus, U. A., Backi, M., Winter, C., Srivastava, M., Schwarz, M. K., Ruckle, T., Paton, J. C., Briles, D., Mack, M., Welte, T., Maus, R., Bohle, R. M., Seeger, W., Rommel, C., Hirsch, E., Lohmeyer, J., and Preissner, K. T. (2007) Importance of phosphoinositide 3-kinase gamma in the host defense against pneumococcal infection. Am. J. Respir. Crit. Care Med. 175, 958-966 (Pubitemid 46684707)
-
(2007)
American Journal of Respiratory and Critical Care Medicine
, vol.175
, Issue.9
, pp. 958-966
-
-
Maus, U.A.1
Backi, M.2
Winter, C.3
Srivastava, M.4
Schwarz, M.K.5
Ruckle, T.6
Paton, J.C.7
Briles, D.8
Mack, M.9
Welte, T.10
Maus, R.11
Bohle, R.M.12
Seeger, W.13
Rommel, C.14
Hirsch, E.15
Lohmeyer, J.16
Preissner, K.T.17
-
29
-
-
0020638911
-
Effect of immunization with pneumolysin on survival time of mice challenged with Streptococcus pneumoniae
-
Paton, J. C., Lock, R. A., Hansman, D. J. (1983) Effect of immunization with pneumolysin on survival time of mice challenged with Streptococcus pneumoniae. Infect. Immun. 40, 548-552 (Pubitemid 13133264)
-
(1983)
Infection and Immunity
, vol.40
, Issue.2
, pp. 548-552
-
-
Paton, J.C.1
Lock, R.A.2
Hansman, D.J.3
-
30
-
-
3142754927
-
Pneumolysin-induced lung injury is independent of leukocyte trafficking into the alveolar space
-
Maus, U. A., Srivastava, M., Paton, J. C., Mack, M., Everhart, M. B., Blackwell, T. S., Christman, J. W., Schlondorff, D., Seeger, W., and Lohmeyer, J. (2004) Pneumolysin-induced lung injury is independent of leukocyte trafficking into the alveolar space. J. Immunol. 173, 1307-1312 (Pubitemid 38924309)
-
(2004)
Journal of Immunology
, vol.173
, Issue.2
, pp. 1307-1312
-
-
Maus, U.A.1
Srivastava, M.2
Paton, J.C.3
Mack, M.4
Everhart, M.B.5
Blackwell, T.S.6
Christman, J.W.7
Schlondorff, D.8
Seeger, W.9
Lohmeyer, J.10
-
31
-
-
0036084395
-
Role of resident alveolar macrophages in leukocyte traffic into the alveolar air space of intact mice
-
Maus, U. A., Koay, M. A., Delbeck, T., Mack, M., Ermert, M., Ermert, L., Blackwell, T. S., Christman, J. W., Schlondorff, D., Seeger, W., and Lohmeyer, J. (2002) Role of resident alveolar macrophages in leukocyte traffic into the alveolar air space of intact mice. Amer. J. Physiol. 282, L1245-1252 (Pubitemid 34654580)
-
(2002)
American Journal of Physiology - Lung Cellular and Molecular Physiology
, vol.282
, Issue.6
-
-
Maus, U.A.1
Audrey, K.M.2
Delbeck, T.3
Mack, M.4
Ermert, M.5
Ermert, L.6
Blackwell, T.S.7
Christman, J.W.8
Schlondorff, D.9
Seeger, W.10
Lohmeyer, J.11
-
32
-
-
0037443571
-
Monocytes are potent facilitators of alveolar neutrophil emigration during lung inflammation: Role of the CCL2-CCR2 axis
-
Maus, U. A., Waelsch, K., Kuziel, W. A., Delbeck, T., Mack, M., Blackwell, T. S., Christman, J. W., Schlondorff, D., Seeger, W., and Lohmeyer, J. (2003) Monocytes are potent facilitators of alveolar neutrophil emigration during lung inflammation: role of the CCL2-CCR2 axis. J. Immunol. 170, 3273-3278 (Pubitemid 36302205)
-
(2003)
Journal of Immunology
, vol.170
, Issue.6
, pp. 3273-3278
-
-
Maus, U.A.1
Waelsch, K.2
Kuziel, W.A.3
Delbeck, T.4
Mack, M.5
Blackwell, T.S.6
Christman, J.W.7
Schlondorff, D.8
Seeger, W.9
Lohmeyer, J.10
-
33
-
-
0017143484
-
A new device for the freeze-clamping of tissue samples
-
Quistorff, B., and Pedersen, E. (1976) A new device for the freeze-clamping of tissue samples. Anal. Biochem. 73, 236-239
-
(1976)
Anal. Biochem.
, vol.73
, pp. 236-239
-
-
Quistorff, B.1
Pedersen, E.2
-
34
-
-
46249088370
-
lumi: A pipeline for processing Illumina microarray
-
DOI 10.1093/bioinformatics/btn224
-
Du, P., Kibbe, W. A., and Lin, S. M. (2008) lumi: a pipeline for processing Illumina microarray. Bioinformatics 24, 1547-1548 (Pubitemid 351911712)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
35
-
-
56549128685
-
Rapid sample preparation and simultaneous quantitation of prostaglandins and lipoxygenase derived fatty acid metabolites by liquid chromatography-mass spectrometry from small sample volumes
-
Unterwurzacher, I., Koal, T., Bonn, G. K., Weinberger, K. M., and Ramsay, S. L. (2008) Rapid sample preparation and simultaneous quantitation of prostaglandins and lipoxygenase derived fatty acid metabolites by liquid chromatography-mass spectrometry from small sample volumes. Clin. Chem. Lab. Med. 46, 1589-1597
-
(2008)
Clin. Chem. Lab. Med.
, vol.46
, pp. 1589-1597
-
-
Unterwurzacher, I.1
Koal, T.2
Bonn, G.K.3
Weinberger, K.M.4
Ramsay, S.L.5
-
36
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R. C., Carey, V. J., Bates, D. M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., Hornik, K., Hothorn, T., Huber, W., Iacus, S., Irizarry, R., Leisch, F., Li, C., Maechler, M., Rossini, A. J., Sawitzki, G., Smith, C., Smyth, G., Tierney, L., Yang, J. Y., and Zhang, J. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
37
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
DOI 10.1038/nbt1239, PII NBT1239
-
Shi, L., Reid, L. H., Jones, W. D., Shippy, R., Warrington, J. A., Baker, S. C., Collins, P. J., de Longueville, F., Kawasaki, E. S., Lee, K. Y., Luo, Y., Sun, Y. A., Willey, J. C., Setterquist, R. A., Fischer, G. M., Tong, W., Dragan, Y. P., Dix, D. J., Frueh, F. W., Goodsaid, F. M., Herman, D., Jensen, R. V., Johnson, C. D., Lobenhofer, E. K., Puri, R. K., Schrf, U., Thierry-Mieg, J., Wang, C., Wilson, M., Wolber, P. K., Zhang, L., Amur, S., Bao, W., Barbacioru, C. C., Lucas, A. B., Bertholet, V., Boysen, C., Bromley, B., Brown, D., Brunner, A., Canales, R., Cao, X. M., Cebula, T. A., Chen, J. J., Cheng, J., Chu, T. M., Chudin, E., Corson, J., Corton, J. C., Croner, L. J., Davies, C., Davison, T. S., Delenstarr, G., Deng, X., Dorris, D., Eklund, A. C., Fan, X. H., Fang, H., Fulmer-Smentek, S., Fuscoe, J. C., Gallagher, K., Ge, W., Guo, L., Guo, X., Hager, J., Haje, P. K., Han, J., Han, T., Harbottle, H. C., Harris, S. C., Hatchwell, E., Hauser, C. A., Hester, S., Hong, H., Hurban, P., Jackson, S. A., Ji, H., Knight, C. R., Kuo, W. P., LeClerc, J. E., Levy, S., Li, Q. Z., Liu, C., Liu, Y., Lombardi, M. J., Ma, Y., Magnuson, S. R., Maqsodi, B., McDaniel, T., Mei, N., Myklebost, O., Ning, B., Novoradovskaya, N., Orr, M. S., Osborn, T. W., Papallo, A., Patterson, T. A., Perkins, R. G., Peters, E. H., Peterson, R., Philips, K. L., Pine, P. S., Pusztai, L., Qian, F., Ren, H., Rosen, M., Rosenzweig, B. A., Samaha, R. R., Schena, M., Schroth, G. P., Shchegrova, S., Smith, D. D., Staedtler, F., Su, Z., Sun, H., Szallasi, Z., Tezak, Z., Thierry-Mieg, D., Thompson, K. L., Tikhonova, I., Turpaz, Y., Vallanat, B., Van, C., Walker, S. J., Wang, S. J., Wang, Y., Wolfinger, R., Wong, A., Wu, J., Xiao, C., Xie, Q., Xu, J., Yang, W., Zhang, L., Zhong, S., Zong, Y., and Slikker, W., Jr. (2006) The MicroArray Quality Control (MAQC) project shows interand intraplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24, 1151-1161 (Pubitemid 44359727)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.9
, pp. 1151-1161
-
-
Shi, L.1
-
38
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K. F., Itoh, M., Kawashima, S., Katayama, T., Araki, M., and Hirakawa, M. (2006) From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34, D354-357
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
39
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D. W., Lempicki, R. A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Lempicki, R.A.2
-
40
-
-
80051547662
-
Characteristics of clinical sepsis reflected in a reliable and reproducible rodent sepsis model
-
Gonnert, F. A., Recknagel, P., Seidel, M., Jbeily, N., Dahlke, K., Bockmeyer, C. L., Winning, J., Lösche, W., Claus, R. A., and Bauer, M. (2011) Characteristics of clinical sepsis reflected in a reliable and reproducible rodent sepsis model. J. Surg. Res. 170, 123-134
-
(2011)
J. Surg. Res.
, vol.170
, pp. 123-134
-
-
Gonnert, F.A.1
Recknagel, P.2
Seidel, M.3
Jbeily, N.4
Dahlke, K.5
Bockmeyer, C.L.6
Winning, J.7
Lösche, W.8
Claus, R.A.9
Bauer, M.10
-
41
-
-
2142825136
-
The Role of Cholesterol in the Activity of Pneumolysin, a Bacterial Protein Toxin
-
Nollmann, M., Gilbert, R., Mitchell, T., Sferrazza, M., and Byron, O. (2004) The role of cholesterol in the activity of pneumolysin, a bacterial protein toxin. Biophys. J. 86, 3141-3151 (Pubitemid 38552714)
-
(2004)
Biophysical Journal
, vol.86
, Issue.5
, pp. 3141-3151
-
-
Nollmann, M.1
Gilbert, R.2
Mitchell, T.3
Sferrazza, M.4
Byron, O.5
-
42
-
-
34347224405
-
Cholesterol as treatment for pneumococcal keratitis: Cholesterol-specific inhibition of pneumolysin in the cornea
-
DOI 10.1167/iovs.07-0017
-
Marquart, M. E., Monds, K. S., McCormick, C. C., Dixon, S. N., Sanders, M. E., Reed, J. M., McDaniel, L. S., Caballero, A. R., and O'Callaghan, R. J. (2007) Cholesterol as treatment for pneumococcal keratitis: cholesterol-specific inhibition of pneumolysin in the cornea. Invest. Ophthalmol. Vis. Sci. 48, 2661-2666 (Pubitemid 351261218)
-
(2007)
Investigative Ophthalmology and Visual Science
, vol.48
, Issue.6
, pp. 2661-2666
-
-
Marquart, M.E.1
Monds, K.S.2
McCormick, C.C.3
Dixon, S.N.4
Sanders, M.E.5
Reed, J.M.6
McDaniel, L.S.7
Caballero, A.R.8
O'Callaghan, R.J.9
-
43
-
-
0028924974
-
A pneumolysin-negative mutant of Streptococcus pneumoniae causes chronic bacteremia rather than acute sepsis in mice
-
Benton, K. A., Everson, M. P., and Briles, D. E. (1995) A pneumolysin-negative mutant of Streptococcus pneumoniae causes chronic bacteremia rather than acute sepsis in mice. Infect. Immun. 63, 448-455
-
(1995)
Infect. Immun.
, vol.63
, pp. 448-455
-
-
Benton, K.A.1
Everson, M.P.2
Briles, D.E.3
-
44
-
-
0037452778
-
Recognition of pneumolysin by Toll-like receptor 4 confers resistance to pneumococcal infection
-
DOI 10.1073/pnas.0435928100
-
Malley, R., Henneke, P., Morse, S. C., Cieslewicz, M. J., Lipsitch, M., Thompson, C. M., Kurt-Jones, E., Paton, J. C., Wessels, M. R., and Golenbock, D. T. (2003) Recognition of pneumolysin by Toll-like receptor 4 confers resistance to pneumococcal infection. Proc. Natl. Acad. Sci. U. S. A. 100, 1966-1971 (Pubitemid 36254557)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.4
, pp. 1966-1971
-
-
Malley, R.1
Henneke, P.2
Morse, S.C.3
Cieslewicz, M.J.4
Lipsitch, M.5
Thompson, C.M.6
Kurt-Jones, E.7
Paton, J.C.8
Wessels, M.R.9
Golenbock, D.T.10
-
45
-
-
0033168728
-
Cutting edge: Recognition of Gram-positive bacterial cell wall components by the innate immune system occurs via Toll-like receptor 2
-
Yoshimura, A., Lien, E., Ingalls, R. R., Tuomanen, E., Dziarski, R., and Golenbock, D. (1999) Cutting edge: recognition of gram-positive bacterial cell wall components by the innate immune system occurs via Toll-like receptor 2. J. Immunol. 163, 1-5 (Pubitemid 29295815)
-
(1999)
Journal of Immunology
, vol.163
, Issue.1
, pp. 1-5
-
-
Yoshimura, A.1
Lien, E.2
Ingalls, R.R.3
Tuomanen, E.4
Dziarski, R.5
Golenbock, D.6
-
46
-
-
34748817460
-
Toll-like receptor-dependent discrimination of streptococci
-
DOI 10.1177/09680519060120050601
-
Santos-Sierra, S., Golenbock, D. T., and Henneke, P. (2006) Toll-like receptor-dependent discrimination of streptococci. J. Endotoxin Res. 12, 307-312 (Pubitemid 47471342)
-
(2006)
Journal of Endotoxin Research
, vol.12
, Issue.5
, pp. 307-312
-
-
Santos-Sierra, S.1
Golenbock, D.T.2
Henneke, P.3
-
47
-
-
78649752711
-
Cholesterol 25-hydroxylase production by dendritic cells and macrophages is regulated by type I interferons
-
Park, K., and Scott, A. L. (2010) Cholesterol 25-hydroxylase production by dendritic cells and macrophages is regulated by type I interferons. J. Leukoc. Biol. 88, 1081-1087
-
(2010)
J. Leukoc. Biol.
, vol.88
, pp. 1081-1087
-
-
Park, K.1
Scott, A.L.2
-
48
-
-
0034672672
-
Oxysterol biosynthetic enzymes
-
Russell, D. W. (2000) Oxysterol biosynthetic enzymes. Biochim. Biophys. Acta 1529, 126-135
-
(2000)
Biochim. Biophys. Acta
, vol.1529
, pp. 126-135
-
-
Russell, D.W.1
-
49
-
-
0034463053
-
Identification of the lipophilic factor produced by macrophages that stimulates steroidogenesis
-
DOI 10.1210/en.141.3.953
-
Nes, W. D., Lukyanenko, Y. O., Jia, Z. H., Quideau, S., Howald, W. N., Pratum, T. K., West, R. R., and Hutson, J. C. (2000) Identification of the lipophilic factor produced by macrophages that stimulates steroidogenesis. Endocrinology 141, 953-958 (Pubitemid 32260438)
-
(2000)
Endocrinology
, vol.141
, Issue.3
, pp. 953-958
-
-
Nes, W.D.1
Lukyanenko, Y.O.2
Jia, Z.H.3
Quideau, S.4
Howald, W.N.5
Pratum, T.K.6
West, R.R.7
Hutson, J.C.8
-
50
-
-
0030941803
-
The SREBP pathway: Regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor
-
DOI 10.1016/S0092-8674(00)80213-5
-
Brown, M. S., and Goldstein, J. L. (1997) The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor. Cell 89, 331-340 (Pubitemid 27220877)
-
(1997)
Cell
, vol.89
, Issue.3
, pp. 331-340
-
-
Brown, M.S.1
Goldstein, J.L.2
-
51
-
-
22144490879
-
Serum lipids and disease severity in children with severe meningococcal sepsis
-
DOI 10.1097/01.CCM.0000171272.50888.AD
-
Vermont, C. L., den Brinker, M., Kakeci, N., de Kleijn, E. D., de Rijke, Y. B., Joosten, K. F., de Groot, R., and Hazelzet, J. A. (2005) Serum lipids and disease severity in children with severe meningococcal sepsis. Crit. Care Med. 33, 1610-1615 (Pubitemid 40980620)
-
(2005)
Critical Care Medicine
, vol.33
, Issue.7
, pp. 1610-1615
-
-
Vermont, C.L.1
Den, B.M.2
Kakeci, N.3
De Kleijn, E.D.4
De Rijke, Y.B.5
Joosten, K.F.M.6
De Groot, R.7
Hazelzet, J.A.8
-
52
-
-
77955273590
-
Factors involved in the paradox of reverse epidemiology
-
Martin-Ponce, E., Santolaria, F., Aleman-Valls, M. R., Gonzalez-Reimers, E., Martinez-Riera, A., Rodriguez-Gaspar, M., and Rodriguez-Rodriguez, E. (2010) Factors involved in the paradox of reverse epidemiology. Clin. Nutr. 29, 501-506
-
(2010)
Clin. Nutr.
, vol.29
, pp. 501-506
-
-
Martin-Ponce, E.1
Santolaria, F.2
Aleman-Valls, M.R.3
Gonzalez-Reimers, E.4
Martinez-Riera, A.5
Rodriguez-Gaspar, M.6
Rodriguez-Rodriguez, E.7
-
53
-
-
0034883374
-
Relationship of hypolipidemia to cytokine concentrations and outcomes in critically ill surgical patients
-
Gordon, B. R., Parker, T. S., Levine, D. M., Saal, S. D., Wang, J. C., Sloan, B. J, Barie, P. S., and Rubin, A. L. (2001) Relationship of hypolipidemia to cytokine concentrations and outcomes in critically ill surgical patients. Crit. Care Med. 29, 1563-1568 (Pubitemid 32762337)
-
(2001)
Critical Care Medicine
, vol.29
, Issue.8
, pp. 1563-1568
-
-
Gordon, B.R.1
Parker, T.S.2
Levine, D.M.3
Saal, S.D.4
Wang, J.C.L.5
Sloan, B.-J.6
Barie, P.S.7
Rubin, A.L.8
-
54
-
-
0347436239
-
Following severe injury, hypocholesterolemia improves with convalescence but persists withorgan failure or onset of infection
-
Dunham, C. M., Fealk, M. H., and Sever, W. E., 3rd (2003) Following severe injury, hypocholesterolemia improves with convalescence but persists withorgan failure or onset of infection. Crit. Care 7, R145-153
-
(2003)
Crit. Care
, vol.7
-
-
Dunham, C.M.1
Fealk, M.H.2
Sever III, W.E.3
-
55
-
-
0038582331
-
Lipoprotein metabolism in patients with severe sepsis
-
DOI 10.1097/01.CCM.0000059724.08290.51
-
Van Leeuwen, H. J., Heezius, E. C., Dallinga, G. M., van Strijp, J. A., Verhoef, J., and van Kessel, K. P. (2003) Lipoprotein metabolism in patients with severe sepsis. Crit. Care Med. 31, 1359-1366 (Pubitemid 36583844)
-
(2003)
Critical Care Medicine
, vol.31
, Issue.5
, pp. 1359-1366
-
-
Van Leeuwen, H.J.1
Heezius, E.C.J.M.2
Dallinga, G.M.3
Van Strijp, J.A.G.4
Verhoef, J.5
Van Kessel, K.P.M.6
-
56
-
-
57349114776
-
HDL: Bridging past and present with a look at the future
-
Scanu, A. M., and Edelstein, C. (2008) HDL: bridging past and present with a look at the future. FASEB J. 22, 4044-4054
-
(2008)
FASEB J.
, vol.22
, pp. 4044-4054
-
-
Scanu, A.M.1
Edelstein, C.2
-
57
-
-
78549231272
-
Lipid-activated nuclear receptors and sepsis
-
De Lima-Salgado, T. M., Cruz, L. M., and Souza, H. P. (2001) Lipid-activated nuclear receptors and sepsis. Endocr. Metab. Immune Disord. Drug Targets 10, 258-265
-
(2001)
Endocr. Metab. Immune Disord. Drug Targets
, vol.10
, pp. 258-265
-
-
De Lima-Salgado, T.M.1
Cruz, L.M.2
Souza, H.P.3
-
58
-
-
4143149127
-
High-density lipoproteins in sepsis and septic shock: Metabolism, actions, and therapeutic applications
-
Wu, A., Hinds, C. J., and Thiemermann, C. (2004) High-density lipoproteins in sepsis and septic shock: metabolism, actions, and therapeutic applications. Shock 21, 210-221
-
(2004)
Shock
, vol.21
, pp. 210-221
-
-
Wu, A.1
Hinds, C.J.2
Thiemermann, C.3
|