Descriptions of rhodopseudomonas parapalustris sp. nov., rhodopseudomonas harwoodiae sp. nov. and rhodopseudomonas pseudopalustris sp. nov., and emended description of rhodopseudomonas palustris

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 8, 2012, Pages 1790-1798

  Venkata Ramana, V ^a   Kalyana Chakravarthy, S ^a   Shalem Raj, P ^a   Vinay Kumar, B ^a   Shobha, E ^a   Ramaprasad, E V V ^a   Sasikala, Ch ^a   Ramana, Ch V ^a  

^a UNIVERSITY OF HYDERABAD   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOHOPANOID; AMINOLIPID; BACTERIAL PROTEIN; BACTERIOCHLOROPHYLL A; CARDIOLIPIN; CAROTENOID; FATTY ACID; GENOMIC DNA; LIPID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RHODOVIOLASCIN; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GEOGRAPHIC DISTRIBUTION; INDIA; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHOTOTROPHIC BACTERIUM; PHYLOGENY; PRIORITY JOURNAL; RHODOPSEUDOMONAS; RHODOPSEUDOMONAS FAECALIS; RHODOPSEUDOMONAS HARWOODIAE; RHODOPSEUDOMONAS PALUSTRIS; RHODOPSEUDOMONAS PARAPALUSTRIS; RHODOPSEUDOMONAS PSEUDOPALUSTRIS; RHODOPSEUDOMONAS RHENOBACENSIS;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FRESH WATER; GEOLOGIC SEDIMENTS; INDIA; LIPIDS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RHODOPSEUDOMONAS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

ALPHAPROTEOBACTERIA; PHOTOBACTERIA; RHODOPSEUDOMONAS; RHODOPSEUDOMONAS FAECALIS; RHODOPSEUDOMONAS PALUSTRIS; RHODOPSEUDOMONAS PALUSTRIS ATCC 17001; RHODOPSEUDOMONAS RHENOBACENSIS;

EID: 84861716066     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.026815-0     Document Type: Article

References (39)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Britton, G., Liaaen-Jensen, S. & Pfander, H. (2004). Carotenoids with a C40 skeleton (b) hydroxycarotenoids. In Carotenoids Handbook, Main List, pp. 51-212. Edited by G. Britton, S. Liaaen-Jensen & H. Pfander. Basel, Boston & Berlin: Birkhauser Verlag.
3. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
4. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Czurda, V. & Maresch, E. (1937). Beitrag zur Kenntnis der Athiorhodobakterien-Gesellschaften. Arch Mikrobiol 8, 99-124 (in German).
6. Hiraishi, A. (1997). Transfer of the bacteriochlorophyll b-containing phototrophic bacteria Rhodopseudomonas viridis and Rhodopseudomonas sulfoviridis to the genus Blastochloris gen. nov. Int J Syst Bacteriol 47, 217-219.
7. Hiraishi, A. & Hoshino, Y. (1984). Distribution of rhodoquinone in Rhodospirillaceae and its taxonomic implications. J Gen Appl Microbiol 30, 435-448.
8. Hiraishi, A. & Ueda, Y. (1994). Rhodoplanes gen. nov., a new genus of phototrophic bacteria including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov. Int J Syst Bacteriol 44, 665-673.
9. Hiraishi, A., Hoshino, Y. & Kitamura, H. (1984). Isoprenoid quinine composition in the classification of Rhodospirillaceae. J Gen Appl Microbiol 30, 197-210.
10. Hougardy, A., Tindall, B. J. & Klemme, J. H. (2000). Rhodopseudomonas rhenobacensis sp. nov., a new nitrate-reducing purple non-sulfur bacterium. Int J Syst Evol Microbiol 50, 985-992.
11. Imhoff, J. F. (1984). Quinones of phototrophic purple bacteria. FEMS Microbiol Lett 25, 85-89.
12. Imhoff, J. F. (2005). Genus Rhodopseudomonas. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, pp. 473-476. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
13. Imhoff, J. F. & Pfennig, N. (2001). Thioflavicoccus mobilis gen. nov., sp. nov., a novel purple sulfur bacterium with bacteriochlorophyll b. Int J Syst Evol Microbiol 51, 105-110.
14. Imhoff, J. F., Kushner, D. J., Kushwaha, S. C. & Kates, M. (1982). Polar lipids in phototrophic bacteria of the Rhodospirillaceae and Chromatiaceae families. J Bacteriol 150, 1192-1201.
15. Imhoff, J. F., Trüper, H. G. & Pfennig, N. (1984). Rearrangement of the species and genera of the phototrophic ''purple nonsulfur bacteria''. Int J Syst Bacteriol 34, 340-343.
16. Imhoff, J. F., Süling, J. & Petri, R. (1998). Phylogenetic relationships among the Chromatiaceae, their taxonomic reclassification and description of the new genera Allochromatium, Halochromatium, Isochromatium, Marichromatium, Thiococcus, Thiohalocapsa and Thermochromatium. Int J Syst Bacteriol 48, 1129-1143.
17. Kämpfer, P., Rosselló-Mora, R., Scholz, H. C., Welinder-Olsson, C., Falsen, E. & Busse, H.-J. (2006). Description of Pseudochrobactrum gen. nov., with the two species Pseudochrobactrum asaccharolyticum sp. nov. and Pseudochrobactrum saccharolyticum sp. nov. Int J Syst Evol Microbiol 56, 1823-1829.
18. Kates, M. (1972). Techniques of Lipidology. New York: Elsevier.
19. Kates, M. (1986). Techniques of Lipidology: Isolation, Analysis, and Identification of Lipids. Amsterdam: Elsevier.
20. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
21. Lakshmi, K. V. N. S., Sasikala, Ch. & Ramana, C. V. (2009). Rhodoplanes pokkaliisoli sp. nov., a phototrophic alphaproteobacterium isolated from a waterlogged brackish paddy soil. Int J Syst Evol Microbiol 59, 2153-2157.
22. Lane, D. J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L. & Pace, N. R. (1985). Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci U S A 82, 6955-6959.
23. Larimer, F. W., Chain, P., Hauser, L., Lamerdin, J., Malfatti, S., Do, L., Land, M. L., Pelletier, D. A., Beatty, J. T. & other authors (2004). Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nat Biotechnol 22, 55-61.
24. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
25. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
26. Neunlist, S., Holst, O. & Rohmer, M. (1985). Prokaryotic triterpenoids. The hopanoids of the purple non-sulphur bacterium Rhodomicrobium vannielii: an aminotriol and its aminoacyl derivatives, N-tryptophanyl and N-ornithinyl aminotriol. Eur J Biochem 147, 561-568.
27. Okamura, K., Takata, K. & Hiraishi, A. (2009). Intrageneric relationships of members of the genus Rhodopseudomonas. J Gen Appl Microbiol 55, 469-478.
28. Oren, A., Duker, S. & Ritter, S. (1996). The polar lipid composition of Walsby's square bacterium. FEMS Microbiol Lett 138, 135-140.
29. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74, 5463-5467.
30. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
31. Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
32. Srinivas, T. N. R., Kumar, P. A., Sasikala, Ch. & Ramana, C. V. (2007). Rhodovulum imhoffii sp. nov. Int J Syst Evol Microbiol 57, 228-232.
33. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
34. Tindall, B. J. (1990a). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
35. Tindall, B. J. (1990b). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
36. Tindall, B. J., Rosselló-Móra, R., Busse, H.-J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
37. Tourova, T. P. & Antonov, A. S. (1988). Identification of microorganisms by rapid DNA-DNA hybridization. MethodsMicrobiol 19, 333-355.
38. Trüper, H. G. & Pfennig, N. (1981). Isolation of members of the families Chromatiaceae and Chlorobiaceae. In The Prokaryotes: a Handbook on Habitats, Isolation, and Identification of Bacteria, pp. 279-289. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
39. van Niel, C. B. (1944). The culture, general physiology, morphology and classification of the non-sulfur purple and brown bacteria. Bacteriol Rev 8, 1-118.