메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Robust quantification of polymerase chain reactions using global fitting

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANALYTICAL ERROR; ANALYTICAL PARAMETERS; ARTICLE; DATA ANALYSIS; FEEDBACK SYSTEM; FLUORESCENCE ANALYSIS; LIGHT INTENSITY; MATHEMATICAL MODEL; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; SIGNAL NOISE RATIO; METHODOLOGY; THEORETICAL MODEL;

EID: 84861689333     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037640     Document Type: Article
Times cited : (55)

References (21)
  • 1
    • 0022372670 scopus 로고
    • Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
    • Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, et al. (1985) Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230: 1350-1354.
    • (1985) Science , vol.230 , pp. 1350-1354
    • Saiki, R.K.1    Scharf, S.2    Faloona, F.3    Mullis, K.B.4    Horn, G.T.5
  • 2
    • 0022965004 scopus 로고
    • Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction
    • Mullis K, Faloona F, Scharf S, Saiki R, Horn G, et al. (1986) Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harb Symp Quant Biol 51 Pt 1: 263-273.
    • (1986) Cold Spring Harb Symp Quant Biol , vol.51 , Issue.Pt 1 , pp. 263-273
    • Mullis, K.1    Faloona, F.2    Scharf, S.3    Saiki, R.4    Horn, G.5
  • 3
    • 0023461268 scopus 로고
    • Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction
    • Mullis KB, Faloona FA, (1987) Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155: 335-350.
    • (1987) Methods Enzymol , vol.155 , pp. 335-350
    • Mullis, K.B.1    Faloona, F.A.2
  • 4
    • 15744381713 scopus 로고
    • Kinetic PCR analysis: real-time monitoring of DNA amplification reactions
    • Higuchi R, Fockler C, Dollinger G, Watson R, (1993) Kinetic PCR analysis: real-time monitoring of DNA amplification reactions. Biotechnology (N Y) 11: 1026-1030.
    • (1993) Biotechnology (N Y) , vol.11 , pp. 1026-1030
    • Higuchi, R.1    Fockler, C.2    Dollinger, G.3    Watson, R.4
  • 5
    • 0029935969 scopus 로고    scopus 로고
    • Theoretical uncertainty of measurements using quantitative polymerase chain reaction
    • Peccoud J, Jacob C, (1996) Theoretical uncertainty of measurements using quantitative polymerase chain reaction. Biophys J 71: 101-108.
    • (1996) Biophys J , vol.71 , pp. 101-108
    • Peccoud, J.1    Jacob, C.2
  • 6
    • 0036289137 scopus 로고    scopus 로고
    • Validation of a quantitative method for real time PCR kinetics
    • Liu W, Saint DA, (2002) Validation of a quantitative method for real time PCR kinetics. Biochem Biophys Res Commun 294: 347-353.
    • (2002) Biochem Biophys Res Commun , vol.294 , pp. 347-353
    • Liu, W.1    Saint, D.A.2
  • 7
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C, Ruijter JM, Deprez RH, Moorman AF, (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339: 62-66.
    • (2003) Neurosci Lett , vol.339 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Deprez, R.H.3    Moorman, A.F.4
  • 8
    • 16544384956 scopus 로고    scopus 로고
    • Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications
    • Rutledge RG, (2004) Sigmoidal curve-fitting redefines quantitative real-time PCR with the prospective of developing automated high-throughput applications. Nucleic Acids Res 32: e178.
    • (2004) Nucleic Acids Res , vol.32
    • Rutledge, R.G.1
  • 9
    • 44049083782 scopus 로고    scopus 로고
    • Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
    • Spiess AN, Feig C, Ritz C, (2008) Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry. BMC Bioinformatics 9: 221.
    • (2008) BMC Bioinformatics , vol.9 , pp. 221
    • Spiess, A.N.1    Feig, C.2    Ritz, C.3
  • 10
    • 64549150047 scopus 로고    scopus 로고
    • Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data
    • Ruijter JM, Ramakers C, Hoogaars WM, Karlen Y, Bakker O, et al. (2009) Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data. Nucleic Acids Res 37: e45.
    • (2009) Nucleic Acids Res , vol.37
    • Ruijter, J.M.1    Ramakers, C.2    Hoogaars, W.M.3    Karlen, Y.4    Bakker, O.5
  • 11
    • 77953872597 scopus 로고    scopus 로고
    • Assessing the performance capabilities of LRE-based assays for absolute quantitative real-time PCR
    • Rutledge RG, Stewart D, (2010) Assessing the performance capabilities of LRE-based assays for absolute quantitative real-time PCR. PLoS ONE 5: e9731.
    • (2010) PLoS ONE , vol.5
    • Rutledge, R.G.1    Stewart, D.2
  • 12
    • 79960517751 scopus 로고    scopus 로고
    • Linear methods for analysis and quality control of relative expression ratios from quantitative real-time polymerase chain reaction experiments
    • Page RB, Stromberg AJ, (2011) Linear methods for analysis and quality control of relative expression ratios from quantitative real-time polymerase chain reaction experiments. ScientificWorldJournal 11: 1383-1393.
    • (2011) ScientificWorldJournal , vol.11 , pp. 1383-1393
    • Page, R.B.1    Stromberg, A.J.2
  • 13
    • 77957930021 scopus 로고    scopus 로고
    • A mechanistic model of PCR for accurate quantification of quantitative PCR data
    • Boggy GJ, Woolf PJ, (2010) A mechanistic model of PCR for accurate quantification of quantitative PCR data. PLoS ONE 5: e12355.
    • (2010) PLoS ONE , vol.5
    • Boggy, G.J.1    Woolf, P.J.2
  • 14
    • 64149097786 scopus 로고    scopus 로고
    • The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
    • Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55: 611-622.
    • (2009) Clin Chem , vol.55 , pp. 611-622
    • Bustin, S.A.1    Benes, V.2    Garson, J.A.3    Hellemans, J.4    Huggett, J.5
  • 15
    • 0025861818 scopus 로고
    • Detection of specific polymerase chain reaction product by utilizing the 5′----3′ exonuclease activity of Thermus aquaticus DNA polymerase
    • Holland PM, Abramson RD, Watson R, Gelfand DH, (1991) Detection of specific polymerase chain reaction product by utilizing the 5′----3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci U S A 88: 7276-7280.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 7276-7280
    • Holland, P.M.1    Abramson, R.D.2    Watson, R.3    Gelfand, D.H.4
  • 16
    • 58149197860 scopus 로고    scopus 로고
    • Critical evaluation of methods used to determine amplification efficiency refutes the exponential character of real-time PCR
    • Rutledge RG, Stewart D, (2008) Critical evaluation of methods used to determine amplification efficiency refutes the exponential character of real-time PCR. BMC Mol Biol 9: 96.
    • (2008) BMC Mol Biol , vol.9 , pp. 96
    • Rutledge, R.G.1    Stewart, D.2
  • 17
    • 44649096316 scopus 로고    scopus 로고
    • Characterization of a dITPase from the hyperthermophilic archaeon Thermococcus onnurineus NA1 and its application in PCR amplification
    • Kim YJ, Ryu YG, Lee HS, Cho Y, Kwon ST, et al. (2008) Characterization of a dITPase from the hyperthermophilic archaeon Thermococcus onnurineus NA1 and its application in PCR amplification. Appl Microbiol Biotechnol 79: 571-578.
    • (2008) Appl Microbiol Biotechnol , vol.79 , pp. 571-578
    • Kim, Y.J.1    Ryu, Y.G.2    Lee, H.S.3    Cho, Y.4    Kwon, S.T.5
  • 18
    • 74149094746 scopus 로고    scopus 로고
    • Facilitation of polymerase chain reaction with thermostable inorganic pyrophosphatase from hyperthermophilic archaeon Pyrococcus horikoshii
    • Park SY, Lee B, Park KS, Chong Y, Yoon MY, et al. (2010) Facilitation of polymerase chain reaction with thermostable inorganic pyrophosphatase from hyperthermophilic archaeon Pyrococcus horikoshii. Appl Microbiol Biotechnol 85: 807-812.
    • (2010) Appl Microbiol Biotechnol , vol.85 , pp. 807-812
    • Park, S.Y.1    Lee, B.2    Park, K.S.3    Chong, Y.4    Yoon, M.Y.5
  • 19
    • 0004084224 scopus 로고
    • Information theory
    • New York, Dover Publications
    • Goldman S, (1968) Information theory. New York, Dover Publications.
    • (1968)
    • Goldman, S.1
  • 20
    • 0029826566 scopus 로고    scopus 로고
    • Efficiency of DNA replication in the polymerase chain reaction
    • Stolovitzky G, Cecchi G, (1996) Efficiency of DNA replication in the polymerase chain reaction. Proc Natl Acad Sci U S A 93: 12947-12952.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 12947-12952
    • Stolovitzky, G.1    Cecchi, G.2
  • 21
    • 44449099134 scopus 로고    scopus 로고
    • A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR
    • Rutledge RG, Stewart D, (2008) A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR. BMC Biotechnol 8: 47.
    • (2008) BMC Biotechnol , vol.8 , pp. 47
    • Rutledge, R.G.1    Stewart, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.