Genus Paracoccidioides: Species recognition and biogeographic aspects

PLoS ONE

Volumn 7, Issue 5, 2012, Pages

  Theodoro, Raquel Cordeiro ^a   Teixeira, Marcus de Melo ^b   Felipe, Maria Sueli Soares ^b   Paduan, Karina dos Santos ^a   Ribolla, Paulo Martins ^a   San Blas, Gioconda ^c   Bagagli, Eduardo ^a  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^b UNIVERSITY OF BRASILIA   (Brazil)

^c INSTITUTO VENEZOLANO DE INVESTIGACIONES CIENTÍFICAS   (Venezuela)

Author keywords

[No Author keywords available]

Indexed keywords

ARF GENE; ARTICLE; BIOGEOGRAPHY; CONIDIUM; FUNGUS GROWTH; FUNGUS ISOLATION; GENE; GP43 GENE; LACAZIA LOBOI; MORPHOLOGY; NONHUMAN; PARACOCCIDIOIDES; PARACOCCIDIOIDES BRASILIENSIS; PARACOCCIDIOIDES LUTZII; PRP8 GENE; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH AMERICA; SPECIES DIFFERENTIATION; SPECIES IDENTIFICATION; YEAST CELL; CLASSIFICATION; CYTOLOGY; FUNGAL GENE; FUNGUS SPORE; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; PHYLOGEOGRAPHY;

PARACOCCIDIOIDES; PARACOCCIDIOIDES BRASILIENSIS;

GENES, FUNGAL; GENETIC MARKERS; PARACOCCIDIOIDES; PHYLOGEOGRAPHY; POLYMORPHISM, SINGLE NUCLEOTIDE; SPORES, FUNGAL;

EID: 84861645023     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037694     Document Type: Article

References (69)

1. Untereiner WA, Scott JA, Naveau FA, Sigler L, Bachewish J, et al. (2004) The Ajellomycetaceae, a new family of vertebrate-associate Onygenales. Mycol. 96 (4): 812-821.
2. Franco M, (1987) Host-parasite relationships in Paracoccidioidomycosis. J Med Vet Mycol 25: 5-18.
3. McEwen JG, Bedoya V, Patino MM, Salazar ME, Restrepo A, (1987) Experimental murine Paracoccidioidomycosis induced by the inhalation of conidia. J Med Vet Mycol 25: 165-175.
4. Herr RA, Tarcha EJ, Taborda PR, Taylor JW, Ajello L, et al. (2001) Phylogenetic analysis of Lacazia loboi places this previously uncharacterized pathogen within the dimorphic onygenales. J Clin Microbiol 39: 309-314.
5. Bagagli E, Bosco SMG, Theodoro RC, Franco M, (2006) Phylogenetic and evolutionary aspects of Paracoccidioides brasiliensis reveal a long coexistence with animal hosts that explain several biological features of the pathogen. Infect Genet Evol 6: 344-351.
6. Vilela R, Rosa PS, Belone AF, Taylor JW, Diorio SM, et al. (2009) Molecular phylogeny of animal pathogen Lacazia loboi inferred from rDNA and DNA coding sequences. Mycol Res 113: 851-857.
7. Teixeira MM, Theodoro RC, Carvalho MJ, Fernandes L, Paes HC, et al. (2009) Phylogenetic analysis reveals a high level of speciation in the Paracoccidioides genus. Mol Phylogenet Evol 52: 273-283.
8. Taborda PR, Taborda VA, McGinnis MR, (1999) Lacazia loboi, the etiologic agent of Lobomycosis. J Clin Microbiol 37: 2031-2033.
9. Bagagli E, Franco M, Bosco SMG, Hebeler-Barbosa F, Trinca LA, et al. (2003) High frequency of Paracoccidioides brasiliensis infection in armadillo (Dasypus novemcinctus): an ecological study. Med Mycol 41: 217-223.
10. Corredor GG, Peralta LA, Castaño JH, Zuluaga JS, Henao B, et al. (2005) The naked-tailed armadillo Cabassous centralis (Miller 1899): a new host to Paracoccidioides brasiliensis. Molecular identification of the isolate. Med Mycol 43 (3): 275-280.
11. Ricci G, Mota FT, Wakamatsu A, Serafim RC, Borra RC, et al. (2004) Canine Paracoccidioidomycosis. Med Mycol 42: 379-83.
12. Farias MR, Werner J, Muro MD, Marques SA, Marques MEA, et al. (2005) Canine Paracoccidioidomycosis: case report of generalized lymphadenitis. Rev Inst Med Trop 47 (14): 64.
13. Hebeler-Barbosa F, Morais FV, Montenegro MR, Kuramae EE, Taylor JW, et al. (2003) Sequence comparison of the internal transcribed spacer regions and gp43 in Paracoccidioides brasiliensis for patients and armadillos Dasypus novemcinctus. J Clin Microbiol 41: 5735-5737.
14. Matute DR, McEwen JG, Montes BA, San-Blas G, Bagagli E, et al. (2006a) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. MolBiolEvol 23: 65-73.
15. Matute DR, Sepulveda EV, Quesada LM, Goldman GH, Taylor JW, et al. (2006b) Microsatellite Analysis of three phylogenetic species of Paracoccidioides brasiliensis. J ClinMicrobiol 44: 2153-2157.
16. Carrero LL, Niño-Vega G, Teixeira MM, Carvalho MJA, Soares CMA, et al. (2008) New Paracoccidioides brasiliensis isolate reveals unexpected genomic variability in this human pathogen. Fungal Genet Biol 45 (5): 605-612.
17. Taylor JW, Turner E, Townsend JP, Dettman JR, Jacobson D, (2006) Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi. Philos Trans R Soc Lond B Biol Sci 361: 1947-1963.
18. Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Gêiser DM, et al. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Gen Biol 31 (1): 21-32.
19. Salgado-Salazar C, Jones LR, Restrepo A, McEwen JG, (2010) The human fungal pathogen Paracoccidioides brasiliensis (Onygenales: Ajellomycetaceae) is a complex of two species: phylogenetic evidence from five mitochondrial markers. Cladistics 26: 1-12.
20. Batista J Jr, Camargo ZP, Fernandes GF, Vicentini AP, Fontes CJF, et al. (2008) Is the geographical origin of a Paracoccidioides brasiliensis isolate important for antigen production for regional diagnosis of paracoccidioidomycosis? Mycoses 53: 176-180.
21. Carvalho KC, Ganiko L, Batista WL, Morais FV, Marques ER, et al. (2010) Virulence of Paracoccidioides brasiliensis and gp43 expression in isolates bearing known PbGP43 genotype. Microbes Infect 7: 55-65.
22. Hahn RC, Macedo AM, Fontes CJF, Batista RD, Santos NL, et al. (2003) Randomly Amplified Polymorphic DNA as a valuable tool for epidemiological studies of Paracoccidioides brasiliensis. J Clin Microbiol 41: 2849-2854.
23. Cisalpino PS, Puccia R, Yamauchi LM, Cano MIN, Silveira JF, et al. (1996) Cloning, Characterization, and Epitope Expression of the Major Diagnostic Antigen of Paracoccidioides brasiliensis. J Biol Chem 271: 4553-4560.
24. Morais FV, Barros TF, Fukada MK, Cisalpino PS, Puccia R, (2000) Polymorphism in the gene coding for the immunodominant antigen gp43 from the pathogenic fungus Paracoccidioides brasiliensis. J ClinMicrobiol 38: 3960-3966.
25. Puccia R, McEwen JG, Cisalpino PS, (2008) Diversity in Paracoccidioides brasiliensis: the PbGP43 gene as a genetic marker. Mycopathologia 165: 275-287.
26. Theodoro RC, Bagagli E, Oliveira C, (2008a) Phylogenetic analysis of PRP8 intein in Paracoccidioides brasiliensis species complex. Fungal Genet Biol 45: 1284-1291.
27. Kwon-Chung KJ, (1973) Studies on Emmonsiella capsulate: Heterothalism and development of the ascocarp. Mycologia 65: 109-121.
28. McCullough MJ, Disalvo AF, Clemons KV, Park P, Stevens DA, (2000) Molecular epidemioloy of Blastomyces dermatitidis. Clin Infec Dis 30: 328-335.
29. Kumar S, Tamura K, Nei M, (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5: 150-163.
30. Panchal M, (2007) The automation of Nested Clade Phylogeographic Analysis. Bioinformatics 23: 509-510.
31. Clement M, Posada D, Crandall KA, (2000) TCS: A computer program to estimate genes genealogies. Mol Ecol 9 (10): 1657-1659.
32. Posada D, Crandall KA, Templeton AR, (2000) GeoDis: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol Ecol 9 (4): 487-488.
33. Bandelt HJ, Forster P, Röhl A, (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
34. Kasuga T, White TJ, Taylor JW, (2002) Estimation of nucleotide substitution rates in Eurotiomycete fungi. Mol Biol Evol 19: 2318-2324.
35. Drummond A, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7, 214.
36. Ree RH, Smith SA, (2008) Maximum Likelihood Inference of Geographic Range Evolution by dispersal, local extinction and cladogenesis. Syst Biol 57 (1): 4-14.
37. Theodoro RC, Bosco SMG, Araújo JP JR, Candeias JM, Macoris SAG, et al. (2008b) Dimorphism, Thermal Tolerance, Virulence and Heat Shock Protein 70 Transcription in different isolates of Paracoccidioides brasiliensis. Mycopathologia. 165: 355-365.
38. Fisher MC, Koenig GL, White TJ, Taylor JW, (2002) Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis. Mycologia 94 (1): 73-84.
39. Terçarioli GR, Theodoro RC, Bosco SMG, Reis GM, Macoris ASG, et al. (2007) Ecological study of Paracoccidioides brasiliensis in soil: growth ability, conidia production and molecular detection. BMC Microbiology 7. 15 Available: http://www.biomedcentral.com/1471-2180/7/92/Mozilla/Del.icio.us. Accessed 2011 Feb.
40. Sheff KW, York ER, Driebe EM, Barker BM, Rounsley SD, et al. (2010) Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii. Med Mycol 48: 466-469.
41. Takayama A, Itano EN, Sano A, Ono MA, Kamei K, (2009) An atypical Paracoccidioides brasiliensis clinical isolate based on multiple gene analysis. Med Mycol 48: 64-72.
42. Calcagno AM, Niño-Vega G, San-Blas F, San-Blas G, (1998) Geographic Discrimination of Paracoccidioides brasiliensis Strains by Randomly Amplified Polymorphic DNA Analysis. J Clin Microbiol 36: 1733-1736.
43. Naiff RD, Ferreira LCP, Barrte TV, Naiff MF, Arias JR, (1986) Paracoccidioidomicose enzoótica em tatus (Dasypus novemcinctus) no Estado do Pará. Rev Inst Med Trop São Paulo 28: 19-27.
44. Silva-Vergara ML, Martinez R, Camargo ZP, (2000) Isolation of Paracoccidioides brasiliensis from armadillos (Dasypus novemcinctus) in an area where the fungus was recently isolated from soil. Med Mycol 38: 193-199.
45. Corredor GG, Castaño JH, Peralta A, Díez S, Arango M, et al. (1999) Isolation of Paracoccidioides brasiliensis from the nine-banded armadillo Dasypus novemcinctus, in an endemic area for Paracoccidioidomycosis in Colombia. Rev Iberoam Micol 16 (4): 216-220.
46. Bagagli E, Sano A, Coelho KIR, Alquati S, Miyaji M, et al. (1998) Isolation of Paracoccidioides brasiliensis from armadillos (Dasypus novemcinctus) captured in an endemic area of paracoccidioidomycosis. Am J Trop Med & Hyg 58: 505-512.
47. Hoorn C, (1993) Marine incursions and the influence of Andean tectonics on the Miocene depositional history of northwestern Amazonia: Results of a palynostratigraphic study. Palaeogeogr Palaeocl 105: 267-309.
48. Hoorn C, Guerrero J, Sarmiento GA, Lorente MA, (1995) Andean tectonics as a cause of changing drainage patterns in Miocene northern South America. Geology 23: 237-240.
49. Lundberg JG, Marshall LG, Guerrero J, Horton B, Lalabarba MCSL, et al. (1998) The Stage for Neotropical fish diversification: A history of tropical South American rivers. In: Malabarba LR, Reis RE, Vari RP, Lucena ZM, Lucena CAS, editors. Phylogeny and classification of neotropical fishes. Porto Alegre: Edipucrs 14-48.
50. Wesselingh FP, Räsänen ME, Irion G, Vonhof HB, Kaandorp R, et al. (2002) Lake Pebas: A paleoecological reconstruction of a Miocene, long-lived lake complex in western Amazonia. Cainozoic Res 1: 35-81.
51. Wesselingh FP, (2006) Miocene long-lived lake Pebas as a stage of molluscradiations, with implications for landscape evolution in western Amazonia. Scripta Geol 133: 1-17.
52. Wesselingh FP, Salo JA, (2006) A Miocene perspective on the evolution of the Amazonian biota. Scripta Geol. 133: 439-458.
53. Richini-Pereira VB, Bosco SMG, Theodoro RC, Macoris SAG, Bagagli E, (2009) Molecular approaches for eco-epidemiological studies of Paracoccidioides brasiliensis. Mem Inst Oswaldo Cruz 104: 636-643.
54. Purtilo DT Walsh GP, Storrs EE, Gannon C, (1975) The immune system of the nine-banded armadillo (Dasypus novemcinctus Linn). Anat Rec Philad 181: 725-734.
55. Ulrich M, Convit J, Centeno M, Rapetti M, (1976) Immunological characteristics of the armadillo, Dasypus sabanicola. Clin Exp Immunol 25: 170-176.
56. Torres I, García AM, Hernández O, González A, McEwen JG, et al. (2010) Presence and expression of the mating type locus in Paracoccidioides brasiliensis isolates. Fungal Genet Biol 47 (4): 373-380.
57. Keely SP, Stringer JR, (2005) Nomenclature and genetic variation of Pneumocystis. In: Walzer PD, Cushion MT, editors. Pneumocystis pneumonia New York Marcel Dekker pp. 39-59.
58. Fournier E, Giraud T, (2008) Sympatric genetic differentiation of a generalist pathogenic fungus, Botrytis cinerea, on two different host plants, grapevine and bramble. J Evol Biol 21: 122-132.
59. Coyne JA, Orr HA, (2004) Speciation. Sunderland Sinauer.
60. Aguiar MAM, Baranger M, Baptestini EM, Kaufman L, Bar-Yam Y, (2009) Global patterns of speciation and diversity. Nature 460: 384-387.
61. Ramos-e-Silva M, Vilela FAS, Brito AC, Carneiro SC, (2009) Lobomycosis. Literature review and future perspectives. Actas Dermosifiliogr 100: 92-100.
62. Symmers WSTC, (1983) A possible case of Lobo's disease acquired in Europe from a bottle-nosed dolphin (Tursiops runcates). Bull Soc Pathol Exot Filiales 76: 777-784.
63. Burns RA, Roy JS, Woods C, Padhey AA, Warnock DW, (2000) Report of the first human case of lobomycosis in the United States. J Clin Microbiol 38: 1283-1285.
64. Migaki G, Valerio MG, Irvine B, Gardner FM, (1971) Lobo's disesase in an Atlantic bottle-nosed dolphin. J Amer Vet Med Assoc 159: 578-582.
65. Cowan DF, (1993) Lobo's disesase in a bottle-nosed dolphin (Tursiops runcates) from Matagorda Bay, Texas. J Wildl Dis 29: 488-489.
66. De Vries GA, Laarman JJ, (1973) A case of Lobo's disease in the dolphin Sotalia guianensis. Aquat Mamm 1: 1-8.
67. Bagagli E, Theodoro RC, Bosco SMG, McEwen JG, (2008) Paracoccidioides brasiliensis: phylogenetic and ecological aspects. Mycopathologia 165: 197-207.
68. Hamilton H, Caballero S, Collins AG, Brownell RL Jr, (2001) Evolution of river dolphins. Proc R Soc Lond B 268: 549-556.
69. Cassens I, Vicario S, Waddell VG, Balchowsky H, Belle DV, et al. (2000) Independent adaptation to riverine habitats allowed survival of ancient cetacean lineages. PNAS 97: 11343-11347.