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Volumn 21, Issue 11, 2012, Pages 2655-2670

Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae

Author keywords

adaptation; beast; Coffea arabica; coffee berry disease; divergence population genetics; plant pathogen

Indexed keywords

ANGOLA; ARTICLE; ASEXUAL REPRODUCTION; BAYES THEOREM; BIOLOGICAL MODEL; COFFEE; COLLETOTRICHUM; ECOTYPE; FRUIT; GENETICS; HOST PATHOGEN INTERACTION; MICROBIOLOGY; PATHOGENICITY; PHYLOGENY; PHYLOGEOGRAPHY; PLANT DISEASE; SPECIES DIFFERENTIATION;

EID: 84861574799     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05557.x     Document Type: Article
Times cited : (66)

References (66)
  • 1
  • 2
    • 33745622420 scopus 로고    scopus 로고
    • SNAP: Combine and map modules for multilocus population genetic analysis
    • Aylor DL, Price EW, Carbone I, (2006) SNAP: combine and map modules for multilocus population genetic analysis. Bioinformatics, 22, 1399-1401.
    • (2006) Bioinformatics , vol.22 , pp. 1399-1401
    • Aylor, D.L.1    Price, E.W.2    Carbone, I.3
  • 5
    • 84861577364 scopus 로고    scopus 로고
    • The dissemination of coffee cultivation throughout the world
    • Bigger M, (2006) The dissemination of coffee cultivation throughout the world. Tropical Agriculture Association Newsletter, 26, 15-19.
    • (2006) Tropical Agriculture Association Newsletter , vol.26 , pp. 15-19
    • Bigger, M.1
  • 6
    • 42049114268 scopus 로고    scopus 로고
    • Variability of Colletotrichum kahawae in relation to other Colletotrichum species from tropical perennial crops and the development of diagnostic techniques
    • Bridge PD, Waller JM, Davies D, Buddie AG, (2008) Variability of Colletotrichum kahawae in relation to other Colletotrichum species from tropical perennial crops and the development of diagnostic techniques. Journal of Phytopathology, 156, 274-280.
    • (2008) Journal of Phytopathology , vol.156 , pp. 274-280
    • Bridge, P.D.1    Waller, J.M.2    Davies, D.3    Buddie, A.G.4
  • 7
    • 37249003697 scopus 로고    scopus 로고
    • The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
    • Brown JM, Lemmon AR, (2007) The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Systematic Biology, 56, 643-655.
    • (2007) Systematic Biology , vol.56 , pp. 643-655
    • Brown, J.M.1    Lemmon, A.R.2
  • 8
    • 0001125515 scopus 로고    scopus 로고
    • Molecular characterization of slow-growing orange and key lime anthracnose strains of Colletotrichum from citrus as C. acutatum
    • Brown A, Sreenivasaprasad S, Timmer L, (1996) Molecular characterization of slow-growing orange and key lime anthracnose strains of Colletotrichum from citrus as C. acutatum. Phytopathology, 86, 523-527.
    • (1996) Phytopathology , vol.86 , pp. 523-527
    • Brown, A.1    Sreenivasaprasad, S.2    Timmer, L.3
  • 9
    • 47649128649 scopus 로고    scopus 로고
    • The typification of Colletotrichum gloeosporioides
    • Cannon PF, Buddie AG, Bridge PD, (2008) The typification of Colletotrichum gloeosporioides. Mycotaxon, 104, 189-204.
    • (2008) Mycotaxon , vol.104 , pp. 189-204
    • Cannon, P.F.1    Buddie, A.G.2    Bridge, P.D.3
  • 10
    • 0033063281 scopus 로고    scopus 로고
    • Mating system of the filamentous ascomycete, Glomerella cingulata
    • Cisar C, TeBeest D, (1999) Mating system of the filamentous ascomycete, Glomerella cingulata. Current Genetics, 35, 127-133.
    • (1999) Current Genetics , vol.35 , pp. 127-133
    • Cisar, C.1    Tebeest, D.2
  • 11
    • 22144439059 scopus 로고    scopus 로고
    • Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice
    • Couch BC, Fudal I, Lebrun M-H, et al. (2005) Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics, 170, 613-630.
    • (2005) Genetics , vol.170 , pp. 613-630
    • Couch, B.C.1    Fudal, I.2    Lebrun, M.-H.3
  • 12
    • 3042750437 scopus 로고    scopus 로고
    • Sinauer Associates, Inc. Sunderland, Massachusetts.
    • Coyne JA, Orr HA, (2004) Speciation. Sinauer Associates, Inc., Sunderland, Massachusetts.
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 13
    • 58149099415 scopus 로고    scopus 로고
    • Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities
    • Crouch JA, Tredway L, Clarke B, Hillman B, (2009) Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities. Molecular Ecology, 18, 123-135.
    • (2009) Molecular Ecology , vol.18 , pp. 123-135
    • Crouch, J.A.1    Tredway, L.2    Clarke, B.3    Hillman, B.4
  • 15
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 16
    • 77951219027 scopus 로고    scopus 로고
    • Clark University, Worcester, Massachusetts.
    • Eastman JR, (2006) IDRISI Andes. Clark University, Worcester, Massachusetts.
    • (2006) IDRISI Andes
    • Eastman, J.R.1
  • 17
    • 77957224326 scopus 로고    scopus 로고
    • Reconstructing routes of invasion using genetic data: Why, how and so what?
    • Estoup A, Guillemaud T, (2010) Reconstructing routes of invasion using genetic data: why, how and so what? Molecular Ecology, 19, 4113-4130.
    • (2010) Molecular Ecology , vol.19 , pp. 4113-4130
    • Estoup, A.1    Guillemaud, T.2
  • 18
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 19
    • 0004998945 scopus 로고
    • Coffee Berry Disease and other Colletotrichum diseases of coffee
    • Firman I, Waller J, (1977) Coffee Berry Disease and other Colletotrichum diseases of coffee. Phytopathological Papers, 20, 1-53.
    • (1977) Phytopathological Papers , vol.20 , pp. 1-53
    • Firman, I.1    Waller, J.2
  • 21
    • 33750383703 scopus 로고    scopus 로고
    • Selection against migrant pathogens: The immigrant inviability barrier in pathogens
    • Giraud T, (2006) Selection against migrant pathogens: the immigrant inviability barrier in pathogens. Heredity, 97, 316-318.
    • (2006) Heredity , vol.97 , pp. 316-318
    • Giraud, T.1
  • 22
    • 77954815758 scopus 로고    scopus 로고
    • Linking the emergence of fungal plant diseases with ecological speciation
    • Giraud T, Gladieux P, Gavrilets S, (2010) Linking the emergence of fungal plant diseases with ecological speciation. Trends in Ecology and Evolution, 25, 387-395.
    • (2010) Trends in Ecology and Evolution , vol.25 , pp. 387-395
    • Giraud, T.1    Gladieux, P.2    Gavrilets, S.3
  • 23
    • 77952885552 scopus 로고    scopus 로고
    • Host-specific differentiation among populations of Venturia inaequalis causing scab on apple, pyracantha and loquat
    • Gladieux P, Caffier V, Devaux M, Le Cam B, (2010) Host-specific differentiation among populations of Venturia inaequalis causing scab on apple, pyracantha and loquat. Fungal Genetics and Biology, 6, 511-521.
    • (2010) Fungal Genetics and Biology , vol.6 , pp. 511-521
    • Gladieux, P.1    Caffier, V.2    Devaux, M.3    Le Cam, B.4
  • 24
    • 80054822242 scopus 로고    scopus 로고
    • Emergence of novel fungal pathogens by ecological speciation: Importance of the reduced viability of immigrants
    • Gladieux P, Guérin F, Giraud T, et al. (2011) Emergence of novel fungal pathogens by ecological speciation: importance of the reduced viability of immigrants. Molecular Ecology, 20, 4521-4532.
    • (2011) Molecular Ecology , vol.20 , pp. 4521-4532
    • Gladieux, P.1    Guérin, F.2    Giraud, T.3
  • 25
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J, Drummond AJ, (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27, 570-580.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 27
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with application to the divergence of Drosophila pseudoobscura and D. persimilis
    • Hey J, Nielsen R, (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with application to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 28
    • 33847253975 scopus 로고    scopus 로고
    • Integration within the Felsenstrein equation for improved Markov chain Monte Carlo methods in population genetics
    • Hey J, Nielsen R, (2007) Integration within the Felsenstrein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences, USA, 104, 2785-2790.
    • (2007) Proceedings of the National Academy of Sciences, USA , vol.104 , pp. 2785-2790
    • Hey, J.1    Nielsen, R.2
  • 29
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho SYW, Phillips MJ, Cooper A, Drummond AJ, (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22, 1561-1568.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 30
    • 79960629871 scopus 로고    scopus 로고
    • Time-dependent rates of molecular evolution
    • Ho SYW, Lanfear R, Bromham L, et al. (2011) Time-dependent rates of molecular evolution. Molecular Ecology, 20, 3087-3101.
    • (2011) Molecular Ecology , vol.20 , pp. 3087-3101
    • Ho, S.Y.W.1    Lanfear, R.2    Bromham, L.3
  • 31
    • 0033886350 scopus 로고    scopus 로고
    • A new statistic for detecting genetic differentiation
    • Hudson RR, (2000) A new statistic for detecting genetic differentiation. Genetics, 155, 2011-2014.
    • (2000) Genetics , vol.155 , pp. 2011-2014
    • Hudson, R.R.1
  • 32
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson RR, Kaplan N, (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics, 111, 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.2
  • 33
    • 39749135587 scopus 로고    scopus 로고
    • Global trends in emerging infectious diseases
    • Jones KE, Patel NG, Levy MA, et al. (2008) Global trends in emerging infectious diseases. Nature, 451, 990-993.
    • (2008) Nature , vol.451 , pp. 990-993
    • Jones, K.E.1    Patel, N.G.2    Levy, M.A.3
  • 34
    • 34347369183 scopus 로고    scopus 로고
    • Domesticated nature: Shaping landscapes and ecosystems for human welfare
    • Kareiva P, Watts S, McDonald R, Boucher T, (2007) Domesticated nature: shaping landscapes and ecosystems for human welfare. Science, 103, 1866-1869.
    • (2007) Science , vol.103 , pp. 1866-1869
    • Kareiva, P.1    Watts, S.2    McDonald, R.3    Boucher, T.4
  • 35
    • 0036897707 scopus 로고    scopus 로고
    • Estimation of nucleotide substitution rates in Eurotiomycete fungi
    • Kasuga T, White TJ, Taylor JW, (2002) Estimation of nucleotide substitution rates in Eurotiomycete fungi. Molecular Biology, 19, 2318-2324.
    • (2002) Molecular Biology , vol.19 , pp. 2318-2324
    • Kasuga, T.1    White, T.J.2    Taylor, J.W.3
  • 36
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K, Toh H, (2009) Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics, 9, 286-298.
    • (2009) Briefings in Bioinformatics , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 37
    • 77951198520 scopus 로고    scopus 로고
    • Characterization of Colletotrichum kahawae isolates causing coffee berry disease in Angola
    • Manuel L, Talhinhas P, Várzea V, Neves-Martins J, (2010) Characterization of Colletotrichum kahawae isolates causing coffee berry disease in Angola. Journal of Phytopathology, 158, 310-313.
    • (2010) Journal of Phytopathology , vol.158 , pp. 310-313
    • Manuel, L.1    Talhinhas, P.2    Várzea, V.3    Neves-Martins, J.4
  • 38
    • 0007948518 scopus 로고
    • A preliminary account of a disease of green coffee berries in Kenya
    • McDonald J, (1926) A preliminary account of a disease of green coffee berries in Kenya. Transactions of the British Mycological Society, 11, 145-154.
    • (1926) Transactions of the British Mycological Society , vol.11 , pp. 145-154
    • McDonald, J.1
  • 39
    • 45849122039 scopus 로고    scopus 로고
    • Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
    • Minin VN, Bloomquist EW, Suchard MA, (2008) Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Molecular Biology and Evolution, 25, 1459-1471.
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1459-1471
    • Minin, V.N.1    Bloomquist, E.W.2    Suchard, M.A.3
  • 40
    • 4344694998 scopus 로고    scopus 로고
    • Evidence for sympatric speciation by host shift in the sea
    • Munday PL, Herwerden LV, Dudgeon CL, (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology, 14, 1498-1504.
    • (2004) Current Biology , vol.14 , pp. 1498-1504
    • Munday, P.L.1    Herwerden, L.V.2    Dudgeon, C.L.3
  • 42
    • 15444364671 scopus 로고    scopus 로고
    • Reproductive isolation caused by natural selection against immigrants from divergent habitats
    • Nosil P, Vines TH, Funk DJ, (2005) Reproductive isolation caused by natural selection against immigrants from divergent habitats. Evolution, 59, 715-719.
    • (2005) Evolution , vol.59 , pp. 715-719
    • Nosil, P.1    Vines, T.H.2    Funk, D.J.3
  • 43
    • 0005073679 scopus 로고
    • Investigations on a disease of Coffea arabica caused by a form of Colletotrichum coffeanum Noack. I. Some factors affecting infection by the pathogen
    • Nutman F, Roberts F, (1960) Investigations on a disease of Coffea arabica caused by a form of Colletotrichum coffeanum Noack. I. Some factors affecting infection by the pathogen. Transactions of the British Mycological Society, 43, 489-505.
    • (1960) Transactions of the British Mycological Society , vol.43 , pp. 489-505
    • Nutman, F.1    Roberts, F.2
  • 45
    • 0031065526 scopus 로고    scopus 로고
    • Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous
    • O'Donnell K, Cigelnik E, (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution, 7, 103-116.
    • (1997) Molecular Phylogenetics and Evolution , vol.7 , pp. 103-116
    • O'Donnell, K.1    Cigelnik, E.2
  • 46
    • 55149125146 scopus 로고    scopus 로고
    • Concatenator: Sequence data matrices handling made easy
    • Pina-Martins F, Paulo OS, (2008) Concatenator: sequence data matrices handling made easy. Molecular Ecology Resources, 8, 1254-1255.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 1254-1255
    • Pina-Martins, F.1    Paulo, O.S.2
  • 47
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA, (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 48
    • 77956506743 scopus 로고    scopus 로고
    • Characterization of Colletotrichum species associated with coffee berries in northern Thailand
    • Prihastuti H, Cai L, Chen H, McKenzie E, Hyde KD, (2009) Characterization of Colletotrichum species associated with coffee berries in northern Thailand. Fungal Diversity, 39, 89-109.
    • (2009) Fungal Diversity , vol.39 , pp. 89-109
    • Prihastuti, H.1    Cai, L.2    Chen, H.3    McKenzie, E.4    Hyde, K.D.5
  • 52
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 55
    • 59849089846 scopus 로고    scopus 로고
    • Evidence for ecological speciation and its alternative
    • Schluter D, (2009) Evidence for ecological speciation and its alternative. Science, 323, 737-741.
    • (2009) Science , vol.323 , pp. 737-741
    • Schluter, D.1
  • 58
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M, (1999) Multiple comparisons of log likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 59
    • 84861571580 scopus 로고    scopus 로고
    • Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: An example from coffee (Coffea spp.) hosts
    • doi.
    • Silva DN, Talhinhas P, Lei C, Várzea V, Paulo OS, Batista D, (2012) Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts. Mycologia, doi:.
    • (2012) Mycologia
    • Silva, D.N.1    Talhinhas, P.2    Lei, C.3    Várzea, V.4    Paulo, O.S.5    Batista, D.6
  • 62
    • 0034500354 scopus 로고    scopus 로고
    • Phylogenetic species recognition and species concepts in fungi
    • Taylor JW, Jacobson DJ, Kroken S, et al. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology, 31, 21-32.
    • (2000) Fungal Genetics and Biology , vol.31 , pp. 21-32
    • Taylor, J.W.1    Jacobson, D.J.2    Kroken, S.3
  • 63
    • 0035400734 scopus 로고    scopus 로고
    • Sympatric speciation in animals: The ugly duckling grows up
    • Via S, (2001) Sympatric speciation in animals: the ugly duckling grows up. Trends in Ecology and Evolution, 16, 381-390.
    • (2001) Trends in Ecology and Evolution , vol.16 , pp. 381-390
    • Via, S.1
  • 64
    • 70849098816 scopus 로고    scopus 로고
    • Repeated climate-linked host shifts have promoted diversification in a temperate clade of leaf-mining flies
    • Winkler IS, Mitter C, Scheffer SJ, (2009) Repeated climate-linked host shifts have promoted diversification in a temperate clade of leaf-mining flies. Proceedings of the National Academy of Sciences, USA, 43, 18103-18108.
    • (2009) Proceedings of the National Academy of Sciences, USA , vol.43 , pp. 18103-18108
    • Winkler, I.S.1    Mitter, C.2    Scheffer, S.J.3
  • 65
    • 44449089555 scopus 로고    scopus 로고
    • Rapid speciation following recent host shifts in the plant pathogenic fungus Rhynchosporium
    • Zaffarano PL, McDonal BA, Linde CC, (2008) Rapid speciation following recent host shifts in the plant pathogenic fungus Rhynchosporium. Evolution, 62, 1418-1436.
    • (2008) Evolution , vol.62 , pp. 1418-1436
    • Zaffarano, P.L.1    McDonal, B.A.2    Linde, C.C.3
  • 66


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