-
1
-
-
0035546073
-
Adaptive hitchhiking effects on genome variability
-
Adolfatto P, (2001) Adaptive hitchhiking effects on genome variability. Current Opinion in Genetics & Development, 11, 635-641.
-
(2001)
Current Opinion in Genetics & Development
, vol.11
, pp. 635-641
-
-
Adolfatto, P.1
-
2
-
-
33745622420
-
SNAP: Combine and map modules for multilocus population genetic analysis
-
Aylor DL, Price EW, Carbone I, (2006) SNAP: combine and map modules for multilocus population genetic analysis. Bioinformatics, 22, 1399-1401.
-
(2006)
Bioinformatics
, vol.22
, pp. 1399-1401
-
-
Aylor, D.L.1
Price, E.W.2
Carbone, I.3
-
3
-
-
0032900678
-
Median-joining networks for inferring intraspecific phylogenies
-
Bandelt HJ, Forster P, Röhl A, (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37-48.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 37-48
-
-
Bandelt, H.J.1
Forster, P.2
Röhl, A.3
-
4
-
-
0028870487
-
Genetic variation in the Coffee Berry Disease pathogen, Colletotrichum kahawae
-
Beynon S, Coddington A, Lewis BG, Várzea V, (1995) Genetic variation in the Coffee Berry Disease pathogen, Colletotrichum kahawae. Physiological and Molecular Plant Pathology, 46, 457-470.
-
(1995)
Physiological and Molecular Plant Pathology
, vol.46
, pp. 457-470
-
-
Beynon, S.1
Coddington, A.2
Lewis, B.G.3
Várzea, V.4
-
5
-
-
84861577364
-
The dissemination of coffee cultivation throughout the world
-
Bigger M, (2006) The dissemination of coffee cultivation throughout the world. Tropical Agriculture Association Newsletter, 26, 15-19.
-
(2006)
Tropical Agriculture Association Newsletter
, vol.26
, pp. 15-19
-
-
Bigger, M.1
-
6
-
-
42049114268
-
Variability of Colletotrichum kahawae in relation to other Colletotrichum species from tropical perennial crops and the development of diagnostic techniques
-
Bridge PD, Waller JM, Davies D, Buddie AG, (2008) Variability of Colletotrichum kahawae in relation to other Colletotrichum species from tropical perennial crops and the development of diagnostic techniques. Journal of Phytopathology, 156, 274-280.
-
(2008)
Journal of Phytopathology
, vol.156
, pp. 274-280
-
-
Bridge, P.D.1
Waller, J.M.2
Davies, D.3
Buddie, A.G.4
-
7
-
-
37249003697
-
The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
-
Brown JM, Lemmon AR, (2007) The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Systematic Biology, 56, 643-655.
-
(2007)
Systematic Biology
, vol.56
, pp. 643-655
-
-
Brown, J.M.1
Lemmon, A.R.2
-
8
-
-
0001125515
-
Molecular characterization of slow-growing orange and key lime anthracnose strains of Colletotrichum from citrus as C. acutatum
-
Brown A, Sreenivasaprasad S, Timmer L, (1996) Molecular characterization of slow-growing orange and key lime anthracnose strains of Colletotrichum from citrus as C. acutatum. Phytopathology, 86, 523-527.
-
(1996)
Phytopathology
, vol.86
, pp. 523-527
-
-
Brown, A.1
Sreenivasaprasad, S.2
Timmer, L.3
-
9
-
-
47649128649
-
The typification of Colletotrichum gloeosporioides
-
Cannon PF, Buddie AG, Bridge PD, (2008) The typification of Colletotrichum gloeosporioides. Mycotaxon, 104, 189-204.
-
(2008)
Mycotaxon
, vol.104
, pp. 189-204
-
-
Cannon, P.F.1
Buddie, A.G.2
Bridge, P.D.3
-
10
-
-
0033063281
-
Mating system of the filamentous ascomycete, Glomerella cingulata
-
Cisar C, TeBeest D, (1999) Mating system of the filamentous ascomycete, Glomerella cingulata. Current Genetics, 35, 127-133.
-
(1999)
Current Genetics
, vol.35
, pp. 127-133
-
-
Cisar, C.1
Tebeest, D.2
-
11
-
-
22144439059
-
Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice
-
Couch BC, Fudal I, Lebrun M-H, et al. (2005) Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics, 170, 613-630.
-
(2005)
Genetics
, vol.170
, pp. 613-630
-
-
Couch, B.C.1
Fudal, I.2
Lebrun, M.-H.3
-
12
-
-
3042750437
-
-
Sinauer Associates, Inc. Sunderland, Massachusetts.
-
Coyne JA, Orr HA, (2004) Speciation. Sinauer Associates, Inc., Sunderland, Massachusetts.
-
(2004)
Speciation
-
-
Coyne, J.A.1
Orr, H.A.2
-
13
-
-
58149099415
-
Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities
-
Crouch JA, Tredway L, Clarke B, Hillman B, (2009) Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities. Molecular Ecology, 18, 123-135.
-
(2009)
Molecular Ecology
, vol.18
, pp. 123-135
-
-
Crouch, J.A.1
Tredway, L.2
Clarke, B.3
Hillman, B.4
-
14
-
-
84923436038
-
-
Cambridge University Press, Cambridge, Massachusetts.
-
Dieckmann U, Doebeli M, Metz JAJ, Tautz D, (2004) Adaptive Speciation. Cambridge University Press, Cambridge, Massachusetts.
-
(2004)
Adaptive Speciation
-
-
Dieckmann, U.1
Doebeli, M.2
Metz, J.A.J.3
Tautz, D.4
-
15
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
16
-
-
77951219027
-
-
Clark University, Worcester, Massachusetts.
-
Eastman JR, (2006) IDRISI Andes. Clark University, Worcester, Massachusetts.
-
(2006)
IDRISI Andes
-
-
Eastman, J.R.1
-
17
-
-
77957224326
-
Reconstructing routes of invasion using genetic data: Why, how and so what?
-
Estoup A, Guillemaud T, (2010) Reconstructing routes of invasion using genetic data: why, how and so what? Molecular Ecology, 19, 4113-4130.
-
(2010)
Molecular Ecology
, vol.19
, pp. 4113-4130
-
-
Estoup, A.1
Guillemaud, T.2
-
18
-
-
85007110786
-
Arlequin ver. 3.0: An integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
-
(2005)
Evolutionary Bioinformatics Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
19
-
-
0004998945
-
Coffee Berry Disease and other Colletotrichum diseases of coffee
-
Firman I, Waller J, (1977) Coffee Berry Disease and other Colletotrichum diseases of coffee. Phytopathological Papers, 20, 1-53.
-
(1977)
Phytopathological Papers
, vol.20
, pp. 1-53
-
-
Firman, I.1
Waller, J.2
-
21
-
-
33750383703
-
Selection against migrant pathogens: The immigrant inviability barrier in pathogens
-
Giraud T, (2006) Selection against migrant pathogens: the immigrant inviability barrier in pathogens. Heredity, 97, 316-318.
-
(2006)
Heredity
, vol.97
, pp. 316-318
-
-
Giraud, T.1
-
22
-
-
77954815758
-
Linking the emergence of fungal plant diseases with ecological speciation
-
Giraud T, Gladieux P, Gavrilets S, (2010) Linking the emergence of fungal plant diseases with ecological speciation. Trends in Ecology and Evolution, 25, 387-395.
-
(2010)
Trends in Ecology and Evolution
, vol.25
, pp. 387-395
-
-
Giraud, T.1
Gladieux, P.2
Gavrilets, S.3
-
23
-
-
77952885552
-
Host-specific differentiation among populations of Venturia inaequalis causing scab on apple, pyracantha and loquat
-
Gladieux P, Caffier V, Devaux M, Le Cam B, (2010) Host-specific differentiation among populations of Venturia inaequalis causing scab on apple, pyracantha and loquat. Fungal Genetics and Biology, 6, 511-521.
-
(2010)
Fungal Genetics and Biology
, vol.6
, pp. 511-521
-
-
Gladieux, P.1
Caffier, V.2
Devaux, M.3
Le Cam, B.4
-
24
-
-
80054822242
-
Emergence of novel fungal pathogens by ecological speciation: Importance of the reduced viability of immigrants
-
Gladieux P, Guérin F, Giraud T, et al. (2011) Emergence of novel fungal pathogens by ecological speciation: importance of the reduced viability of immigrants. Molecular Ecology, 20, 4521-4532.
-
(2011)
Molecular Ecology
, vol.20
, pp. 4521-4532
-
-
Gladieux, P.1
Guérin, F.2
Giraud, T.3
-
25
-
-
77249086587
-
Bayesian inference of species trees from multilocus data
-
Heled J, Drummond AJ, (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27, 570-580.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 570-580
-
-
Heled, J.1
Drummond, A.J.2
-
26
-
-
34249096109
-
The speed of ecological speciation
-
Hendry AP, Nosil P, Rieseberg LH, (2007) The speed of ecological speciation. Functional Ecology, 21, 455-464.
-
(2007)
Functional Ecology
, vol.21
, pp. 455-464
-
-
Hendry, A.P.1
Nosil, P.2
Rieseberg, L.H.3
-
27
-
-
3142714474
-
Multilocus methods for estimating population sizes, migration rates and divergence time, with application to the divergence of Drosophila pseudoobscura and D. persimilis
-
Hey J, Nielsen R, (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with application to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747-760.
-
(2004)
Genetics
, vol.167
, pp. 747-760
-
-
Hey, J.1
Nielsen, R.2
-
28
-
-
33847253975
-
Integration within the Felsenstrein equation for improved Markov chain Monte Carlo methods in population genetics
-
Hey J, Nielsen R, (2007) Integration within the Felsenstrein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences, USA, 104, 2785-2790.
-
(2007)
Proceedings of the National Academy of Sciences, USA
, vol.104
, pp. 2785-2790
-
-
Hey, J.1
Nielsen, R.2
-
29
-
-
20444427160
-
Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
-
Ho SYW, Phillips MJ, Cooper A, Drummond AJ, (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22, 1561-1568.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1561-1568
-
-
Ho, S.Y.W.1
Phillips, M.J.2
Cooper, A.3
Drummond, A.J.4
-
30
-
-
79960629871
-
Time-dependent rates of molecular evolution
-
Ho SYW, Lanfear R, Bromham L, et al. (2011) Time-dependent rates of molecular evolution. Molecular Ecology, 20, 3087-3101.
-
(2011)
Molecular Ecology
, vol.20
, pp. 3087-3101
-
-
Ho, S.Y.W.1
Lanfear, R.2
Bromham, L.3
-
31
-
-
0033886350
-
A new statistic for detecting genetic differentiation
-
Hudson RR, (2000) A new statistic for detecting genetic differentiation. Genetics, 155, 2011-2014.
-
(2000)
Genetics
, vol.155
, pp. 2011-2014
-
-
Hudson, R.R.1
-
32
-
-
0022211482
-
Statistical properties of the number of recombination events in the history of a sample of DNA sequences
-
Hudson RR, Kaplan N, (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics, 111, 147-164.
-
(1985)
Genetics
, vol.111
, pp. 147-164
-
-
Hudson, R.R.1
Kaplan, N.2
-
33
-
-
39749135587
-
Global trends in emerging infectious diseases
-
Jones KE, Patel NG, Levy MA, et al. (2008) Global trends in emerging infectious diseases. Nature, 451, 990-993.
-
(2008)
Nature
, vol.451
, pp. 990-993
-
-
Jones, K.E.1
Patel, N.G.2
Levy, M.A.3
-
34
-
-
34347369183
-
Domesticated nature: Shaping landscapes and ecosystems for human welfare
-
Kareiva P, Watts S, McDonald R, Boucher T, (2007) Domesticated nature: shaping landscapes and ecosystems for human welfare. Science, 103, 1866-1869.
-
(2007)
Science
, vol.103
, pp. 1866-1869
-
-
Kareiva, P.1
Watts, S.2
McDonald, R.3
Boucher, T.4
-
35
-
-
0036897707
-
Estimation of nucleotide substitution rates in Eurotiomycete fungi
-
Kasuga T, White TJ, Taylor JW, (2002) Estimation of nucleotide substitution rates in Eurotiomycete fungi. Molecular Biology, 19, 2318-2324.
-
(2002)
Molecular Biology
, vol.19
, pp. 2318-2324
-
-
Kasuga, T.1
White, T.J.2
Taylor, J.W.3
-
36
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K, Toh H, (2009) Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics, 9, 286-298.
-
(2009)
Briefings in Bioinformatics
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
37
-
-
77951198520
-
Characterization of Colletotrichum kahawae isolates causing coffee berry disease in Angola
-
Manuel L, Talhinhas P, Várzea V, Neves-Martins J, (2010) Characterization of Colletotrichum kahawae isolates causing coffee berry disease in Angola. Journal of Phytopathology, 158, 310-313.
-
(2010)
Journal of Phytopathology
, vol.158
, pp. 310-313
-
-
Manuel, L.1
Talhinhas, P.2
Várzea, V.3
Neves-Martins, J.4
-
38
-
-
0007948518
-
A preliminary account of a disease of green coffee berries in Kenya
-
McDonald J, (1926) A preliminary account of a disease of green coffee berries in Kenya. Transactions of the British Mycological Society, 11, 145-154.
-
(1926)
Transactions of the British Mycological Society
, vol.11
, pp. 145-154
-
-
McDonald, J.1
-
39
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
Minin VN, Bloomquist EW, Suchard MA, (2008) Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Molecular Biology and Evolution, 25, 1459-1471.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
40
-
-
4344694998
-
Evidence for sympatric speciation by host shift in the sea
-
Munday PL, Herwerden LV, Dudgeon CL, (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology, 14, 1498-1504.
-
(2004)
Current Biology
, vol.14
, pp. 1498-1504
-
-
Munday, P.L.1
Herwerden, L.V.2
Dudgeon, C.L.3
-
42
-
-
15444364671
-
Reproductive isolation caused by natural selection against immigrants from divergent habitats
-
Nosil P, Vines TH, Funk DJ, (2005) Reproductive isolation caused by natural selection against immigrants from divergent habitats. Evolution, 59, 715-719.
-
(2005)
Evolution
, vol.59
, pp. 715-719
-
-
Nosil, P.1
Vines, T.H.2
Funk, D.J.3
-
43
-
-
0005073679
-
Investigations on a disease of Coffea arabica caused by a form of Colletotrichum coffeanum Noack. I. Some factors affecting infection by the pathogen
-
Nutman F, Roberts F, (1960) Investigations on a disease of Coffea arabica caused by a form of Colletotrichum coffeanum Noack. I. Some factors affecting infection by the pathogen. Transactions of the British Mycological Society, 43, 489-505.
-
(1960)
Transactions of the British Mycological Society
, vol.43
, pp. 489-505
-
-
Nutman, F.1
Roberts, F.2
-
45
-
-
0031065526
-
Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous
-
O'Donnell K, Cigelnik E, (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution, 7, 103-116.
-
(1997)
Molecular Phylogenetics and Evolution
, vol.7
, pp. 103-116
-
-
O'Donnell, K.1
Cigelnik, E.2
-
46
-
-
55149125146
-
Concatenator: Sequence data matrices handling made easy
-
Pina-Martins F, Paulo OS, (2008) Concatenator: sequence data matrices handling made easy. Molecular Ecology Resources, 8, 1254-1255.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 1254-1255
-
-
Pina-Martins, F.1
Paulo, O.S.2
-
47
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada D, Crandall KA, (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
48
-
-
77956506743
-
Characterization of Colletotrichum species associated with coffee berries in northern Thailand
-
Prihastuti H, Cai L, Chen H, McKenzie E, Hyde KD, (2009) Characterization of Colletotrichum species associated with coffee berries in northern Thailand. Fungal Diversity, 39, 89-109.
-
(2009)
Fungal Diversity
, vol.39
, pp. 89-109
-
-
Prihastuti, H.1
Cai, L.2
Chen, H.3
McKenzie, E.4
Hyde, K.D.5
-
52
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
53
-
-
0347513220
-
DnaSP: DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas AR, (2003) DnaSP: DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sánchez-Delbarrio, J.C.2
Messeguer, X.3
Rozas, A.R.4
-
55
-
-
59849089846
-
Evidence for ecological speciation and its alternative
-
Schluter D, (2009) Evidence for ecological speciation and its alternative. Science, 323, 737-741.
-
(2009)
Science
, vol.323
, pp. 737-741
-
-
Schluter, D.1
-
56
-
-
67650281518
-
Genetics and ecological speciation
-
Schluter D, Conte GL, (2009) Genetics and ecological speciation. Proceedings of the National Academy of Sciences, USA, 106, 9955-9962.
-
(2009)
Proceedings of the National Academy of Sciences, USA
, vol.106
, pp. 9955-9962
-
-
Schluter, D.1
Conte, G.L.2
-
57
-
-
79960213694
-
Magic traits in speciation: "magic" but not rare?
-
Servedio MR, Doorn GSV, Kopp M, Frame AM, Nosil P, (2011) Magic traits in speciation: "magic" but not rare? Trends in Ecology and Evolution, 26, 389-397.
-
(2011)
Trends in Ecology and Evolution
, vol.26
, pp. 389-397
-
-
Servedio, M.R.1
Doorn, G.S.V.2
Kopp, M.3
Frame, A.M.4
Nosil, P.5
-
58
-
-
0032766857
-
Multiple comparisons of log likelihoods with applications to phylogenetic inference
-
Shimodaira H, Hasegawa M, (1999) Multiple comparisons of log likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
59
-
-
84861571580
-
Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: An example from coffee (Coffea spp.) hosts
-
doi.
-
Silva DN, Talhinhas P, Lei C, Várzea V, Paulo OS, Batista D, (2012) Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts. Mycologia, doi:.
-
(2012)
Mycologia
-
-
Silva, D.N.1
Talhinhas, P.2
Lei, C.3
Várzea, V.4
Paulo, O.S.5
Batista, D.6
-
62
-
-
0034500354
-
Phylogenetic species recognition and species concepts in fungi
-
Taylor JW, Jacobson DJ, Kroken S, et al. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology, 31, 21-32.
-
(2000)
Fungal Genetics and Biology
, vol.31
, pp. 21-32
-
-
Taylor, J.W.1
Jacobson, D.J.2
Kroken, S.3
-
63
-
-
0035400734
-
Sympatric speciation in animals: The ugly duckling grows up
-
Via S, (2001) Sympatric speciation in animals: the ugly duckling grows up. Trends in Ecology and Evolution, 16, 381-390.
-
(2001)
Trends in Ecology and Evolution
, vol.16
, pp. 381-390
-
-
Via, S.1
-
64
-
-
70849098816
-
Repeated climate-linked host shifts have promoted diversification in a temperate clade of leaf-mining flies
-
Winkler IS, Mitter C, Scheffer SJ, (2009) Repeated climate-linked host shifts have promoted diversification in a temperate clade of leaf-mining flies. Proceedings of the National Academy of Sciences, USA, 43, 18103-18108.
-
(2009)
Proceedings of the National Academy of Sciences, USA
, vol.43
, pp. 18103-18108
-
-
Winkler, I.S.1
Mitter, C.2
Scheffer, S.J.3
-
65
-
-
44449089555
-
Rapid speciation following recent host shifts in the plant pathogenic fungus Rhynchosporium
-
Zaffarano PL, McDonal BA, Linde CC, (2008) Rapid speciation following recent host shifts in the plant pathogenic fungus Rhynchosporium. Evolution, 62, 1418-1436.
-
(2008)
Evolution
, vol.62
, pp. 1418-1436
-
-
Zaffarano, P.L.1
McDonal, B.A.2
Linde, C.C.3
-
66
-
-
0031690535
-
Recombination in Magnaporthe grisea
-
Zeigler RS, (1998) Recombination in Magnaporthe grisea. Annual Review of Phytopathology, 36, 249-275.
-
(1998)
Annual Review of Phytopathology
, vol.36
, pp. 249-275
-
-
Zeigler, R.S.1
|