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Volumn 16, Issue 6, 2012, Pages 1321-1330

Molecular mechanisms controlling CFTR gene expression in the airway

Author keywords

3C; Airway epithelium; CFTR; DHS; Enhancer; Gene expression; Histone modification

Indexed keywords

HISTONE; TRANSMEMBRANE CONDUCTANCE REGULATOR;

EID: 84861534368     PISSN: 15821838     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1582-4934.2011.01439.x     Document Type: Article
Times cited : (32)

References (28)
  • 1
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Birney E, Stamatoyannopoulos JA, Dutta A, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007; 447: 799-816.
    • (2007) Nature. , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3
  • 2
    • 0024453308 scopus 로고
    • Identification of the cystic fibrosis gene: chromosome walking and jumping
    • Rommens JM, Iannuzzi MC, Kerem B, et al. Identification of the cystic fibrosis gene: chromosome walking and jumping. Science. 1989; 245: 1059-65.
    • (1989) Science. , vol.245 , pp. 1059-1065
    • Rommens, J.M.1    Iannuzzi, M.C.2    Kerem, B.3
  • 3
    • 79952260269 scopus 로고    scopus 로고
    • Genomic approaches for the discovery of CFTR regulatory elements
    • Ott CJ, Harris A. Genomic approaches for the discovery of CFTR regulatory elements. Transcr. 2011; 2: 23-7.
    • (2011) Transcr. , vol.2 , pp. 23-27
    • Ott, C.J.1    Harris, A.2
  • 4
    • 0024424270 scopus 로고
    • Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA
    • Riordan JR, Rommens JM, Kerem B, et al. Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA. Science. 1989; 245: 1066-73.
    • (1989) Science. , vol.245 , pp. 1066-1073
    • Riordan, J.R.1    Rommens, J.M.2    Kerem, B.3
  • 5
    • 73949111636 scopus 로고    scopus 로고
    • Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus
    • Ott CJ, Blackledge NP, Kerschner JL, et al. Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus. Proc Natl Acad Sci USA. 2009; 106: 19934-9.
    • (2009) Proc Natl Acad Sci USA. , vol.106 , pp. 19934-19939
    • Ott, C.J.1    Blackledge, N.P.2    Kerschner, J.L.3
  • 6
    • 36749087745 scopus 로고    scopus 로고
    • CTCF mediates insulator function at the CFTR locus
    • Blackledge NP, Carter EJ, Evans JR, et al. CTCF mediates insulator function at the CFTR locus. Biochem J. 2007; 408: 267-75.
    • (2007) Biochem J. , vol.408 , pp. 267-275
    • Blackledge, N.P.1    Carter, E.J.2    Evans, J.R.3
  • 7
    • 62549146697 scopus 로고    scopus 로고
    • An insulator element 3' to the CFTR gene binds CTCF and reveals an active chromatin hub in primary cells
    • Blackledge NP, Ott CJ, Gillen AE, et al. An insulator element 3' to the CFTR gene binds CTCF and reveals an active chromatin hub in primary cells. Nucleic Acids Res. 2009; 37: 1086-94.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1086-1094
    • Blackledge, N.P.1    Ott, C.J.2    Gillen, A.E.3
  • 8
    • 34548565667 scopus 로고    scopus 로고
    • Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
    • Hagege H, Klous P, Braem C, et al. Quantitative analysis of chromosome conformation capture assays (3C-qPCR). Nat Protoc. 2007; 2: 1722-33.
    • (2007) Nat Protoc. , vol.2 , pp. 1722-1733
    • Hagege, H.1    Klous, P.2    Braem, C.3
  • 9
    • 78650304236 scopus 로고    scopus 로고
    • Charting histone modifications and the functional organization of mammalian genomes
    • Zhou VW, Goren A, Bernstein BE. Charting histone modifications and the functional organization of mammalian genomes. Nat Rev Genet. 2011; 12: 7-18.
    • (2011) Nat Rev Genet. , vol.12 , pp. 7-18
    • Zhou, V.W.1    Goren, A.2    Bernstein, B.E.3
  • 10
    • 0025134125 scopus 로고
    • Beta-adrenergic receptors on human tracheal epithelial cells in primary culture
    • Davis PB, Silski CL, Kercsmar CM, et al. Beta-adrenergic receptors on human tracheal epithelial cells in primary culture. Am J Physiol. 1990; 258: C71-6.
    • (1990) Am J Physiol , vol.258
    • Davis, P.B.1    Silski, C.L.2    Kercsmar, C.M.3
  • 11
    • 0027928745 scopus 로고
    • CFTR expression and chloride secretion in polarized immortal human bronchial epithelial cells
    • Cozens AL, Yezzi MJ, Kunzelmann K, et al. CFTR expression and chloride secretion in polarized immortal human bronchial epithelial cells. Am J Respir Cell Mol Biol. 1994; 10: 38-47.
    • (1994) Am J Respir Cell Mol Biol. , vol.10 , pp. 38-47
    • Cozens, A.L.1    Yezzi, M.J.2    Kunzelmann, K.3
  • 12
    • 0023944920 scopus 로고
    • Transformation of human bronchial epithelial cells by infection with SV40 or adenovirus-12 SV40 hybrid virus, or transfection via strontium phosphate coprecipitation with a plasmid containing SV40 early region genes
    • Reddel RR, Ke Y, Gerwin BI, et al. Transformation of human bronchial epithelial cells by infection with SV40 or adenovirus-12 SV40 hybrid virus, or transfection via strontium phosphate coprecipitation with a plasmid containing SV40 early region genes. Cancer Res. 1988; 48: 1904-9.
    • (1988) Cancer Res. , vol.48 , pp. 1904-1909
    • Reddel, R.R.1    Ke, Y.2    Gerwin, B.I.3
  • 13
    • 0017332809 scopus 로고
    • Absence of HeLa cell contamination in 169 cell lines derived from human tumours
    • Fogh J, Wright WC, Loveless JD. Absence of HeLa cell contamination in 169 cell lines derived from human tumours. J Natl Cancer Inst. 1977; 58: 209-14.
    • (1977) J Natl Cancer Inst. , vol.58 , pp. 209-214
    • Fogh, J.1    Wright, W.C.2    Loveless, J.D.3
  • 14
    • 33745409293 scopus 로고    scopus 로고
    • DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays
    • Crawford GE, Davis S, Scacheri PC, et al. DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays. Nat Methods. 2006; 3: 503-9.
    • (2006) Nat Methods. , vol.3 , pp. 503-509
    • Crawford, G.E.1    Davis, S.2    Scacheri, P.C.3
  • 15
    • 33747874899 scopus 로고    scopus 로고
    • Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays
    • Scacheri PC, Crawford GE, Davis S. Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays. Methods Enzymol. 2006; 411: 270-82.
    • (2006) Methods Enzymol. , vol.411 , pp. 270-282
    • Scacheri, P.C.1    Crawford, G.E.2    Davis, S.3
  • 16
    • 0029987823 scopus 로고    scopus 로고
    • A regulatory element in intron 1 of the cystic fibrosis transmembrane conductance regulator gene
    • Smith AN, Barth ML, McDowell TL, et al. A regulatory element in intron 1 of the cystic fibrosis transmembrane conductance regulator gene. J Biol Chem. 1996; 271: 9947-54.
    • (1996) J Biol Chem. , vol.271 , pp. 9947-9954
    • Smith, A.N.1    Barth, M.L.2    McDowell, T.L.3
  • 17
    • 0036161983 scopus 로고    scopus 로고
    • Evaluation of potential regulatory elements identified as DNase I hypersensitive sites in the CFTR gene
    • Phylactides M, Rowntree R, Nuthall H, et al. Evaluation of potential regulatory elements identified as DNase I hypersensitive sites in the CFTR gene. Eur J Biochem. 2002; 269: 553-9.
    • (2002) Eur J Biochem. , vol.269 , pp. 553-559
    • Phylactides, M.1    Rowntree, R.2    Nuthall, H.3
  • 18
    • 0141730403 scopus 로고    scopus 로고
    • The beta-globin nuclear compartment in development and erythroid differentiation
    • Palstra RJ, Tolhuis B, Splinter E, et al. The beta-globin nuclear compartment in development and erythroid differentiation. Nat Genet. 2003; 35: 190-4.
    • (2003) Nat Genet. , vol.35 , pp. 190-194
    • Palstra, R.J.1    Tolhuis, B.2    Splinter, E.3
  • 19
    • 0034652630 scopus 로고    scopus 로고
    • Multiple potential intragenic regulatory elements in the CFTR gene
    • Smith DJ, Nuthall HN, Majetti ME, et al. Multiple potential intragenic regulatory elements in the CFTR gene. Genomics. 2000; 64: 90-6.
    • (2000) Genomics. , vol.64 , pp. 90-96
    • Smith, D.J.1    Nuthall, H.N.2    Majetti, M.E.3
  • 20
    • 1642422936 scopus 로고    scopus 로고
    • HNF1α is involved in regulation of expression of the CFTR gene
    • Mouchel N, Henstra SA, McCarthy VA, et al. HNF1α is involved in regulation of expression of the CFTR gene. Biochem J. 2004; 378: 909-18.
    • (2004) Biochem J. , vol.378 , pp. 909-918
    • Mouchel, N.1    Henstra, S.A.2    McCarthy, V.A.3
  • 21
    • 77949326555 scopus 로고    scopus 로고
    • Interaction of intestinal and pancreatic transcription factors in the regulation of CFTR gene expression
    • McCarthy VA, Ott CJ, Phylactides M, et al. Interaction of intestinal and pancreatic transcription factors in the regulation of CFTR gene expression. Biochim Biophys Acta. 2009; 1789: 709-18.
    • (2009) Biochim Biophys Acta. , vol.1789 , pp. 709-718
    • McCarthy, V.A.1    Ott, C.J.2    Phylactides, M.3
  • 22
    • 77954601603 scopus 로고    scopus 로고
    • Transcription. Repressive transcription
    • Guenther MG, Young RA. Transcription. Repressive transcription. Science. 2010; 329: 150-1.
    • (2010) Science. , vol.329 , pp. 150-151
    • Guenther, M.G.1    Young, R.A.2
  • 23
    • 0035394438 scopus 로고    scopus 로고
    • An element in intron 1 of the CFTR gene augments intestinal expression in vivo
    • Rowntree R, Vassaux G, McDowell TL, et al. An element in intron 1 of the CFTR gene augments intestinal expression in vivo. Hum Mol Genet. 2001; 11: 1455-64.
    • (2001) Hum Mol Genet. , vol.11 , pp. 1455-1464
    • Rowntree, R.1    Vassaux, G.2    McDowell, T.L.3
  • 24
    • 65249131931 scopus 로고    scopus 로고
    • A complex intronic enhancer regulates expression of the CFTR gene by direct interaction with the promoter
    • Ott CJ, Suszko M, Blackledge NP, et al. A complex intronic enhancer regulates expression of the CFTR gene by direct interaction with the promoter. J Cell Mol Med. 2009; 13: 680-92.
    • (2009) J Cell Mol Med. , vol.13 , pp. 680-692
    • Ott, C.J.1    Suszko, M.2    Blackledge, N.P.3
  • 25
    • 0028978042 scopus 로고
    • Characterization of DNASE I hypersensitive sites in the 120kb 5' to the CFTR gene
    • Smith AN, Wardle CJ, Harris A. Characterization of DNASE I hypersensitive sites in the 120kb 5' to the CFTR gene. Biochem Biophys Res Commun. 1995; 211: 274-81.
    • (1995) Biochem Biophys Res Commun. , vol.211 , pp. 274-281
    • Smith, A.N.1    Wardle, C.J.2    Harris, A.3
  • 26
    • 0033485416 scopus 로고    scopus 로고
    • Analysis of a DNAse I hypersensitive site located -20.9 kb upstream of the CFTR gene
    • Nuthall H, Vassaux G, Huxley C, et al. Analysis of a DNAse I hypersensitive site located -20.9 kb upstream of the CFTR gene. Eur J Bioch. 1999; 266: 431-43.
    • (1999) Eur J Bioch. , vol.266 , pp. 431-443
    • Nuthall, H.1    Vassaux, G.2    Huxley, C.3
  • 27
    • 77955235716 scopus 로고    scopus 로고
    • Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene
    • Gheldof N, Smith EM, Tabuchi TM, et al. Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene. Nucleic Acids Res. 2010; 38: 4325-36.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4325-4336
    • Gheldof, N.1    Smith, E.M.2    Tabuchi, T.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.