-
1
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, et al. Genome-wide location and function of DNA binding proteins. Science 2000; 290:2306-9.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
-
2
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007; 316:1497-502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
3
-
-
33745416080
-
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
-
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, et al. Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nat Meth 2006; 3:511-8.
-
(2006)
Nat Meth
, vol.3
, pp. 511-518
-
-
Sabo, P.J.1
Kuehn, M.S.2
Thurman, R.3
Johnson, B.E.4
Johnson, E.M.5
Cao, H.6
-
4
-
-
33745409293
-
DNase-chip: A high-resolution method to identify DNase I hypersensitive sites using tiled microarrays
-
Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, et al. DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays. Nat Meth 2006; 3:503-9.
-
(2006)
Nat Meth
, vol.3
, pp. 503-509
-
-
Crawford, G.E.1
Davis, S.2
Scacheri, P.C.3
Renaud, G.4
Halawi, M.J.5
Erdos, M.R.6
-
5
-
-
38649099445
-
High-resolution mapping and characterization of open chromatin across the genome
-
Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, et al. High-resolution mapping and characterization of open chromatin across the genome. Cell 2008; 132:311-22.
-
(2008)
Cell
, vol.132
, pp. 311-322
-
-
Boyle, A.P.1
Davis, S.2
Shulha, H.P.3
Meltzer, P.4
Margulies, E.H.5
Weng, Z.6
-
6
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res 2007; 17:877-85.
-
(2007)
Genome Res
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
7
-
-
70349267600
-
Mapping accessible chromatin regions using Sono-Seq
-
Auerbach RK, Euskirchen G, Rozowsky J, Lamarre-Vincent N, Moqtaderi Z, Lefrançois P, et al. Mapping accessible chromatin regions using Sono-Seq. Proc Nat Acad Sci USA 2009; 106:14926-31.
-
(2009)
Proc Nat Acad Sci USA
, vol.106
, pp. 14926-14931
-
-
Auerbach, R.K.1
Euskirchen, G.2
Rozowsky, J.3
Lamarre-Vincent, N.4
Moqtaderi, Z.5
Lefrançois, P.6
-
9
-
-
34250352722
-
The 4C technique: The 'Rosetta stone' for genome biology in 3D?
-
Ohlsson R, Göndör A. The 4C technique: the 'Rosetta stone' for genome biology in 3D? Curr Opin Cell Biol 2007; 19:321-5.
-
(2007)
Curr Opin Cell Biol
, vol.19
, pp. 321-325
-
-
Ohlsson, R.1
Göndör, A.2
-
10
-
-
21444440910
-
The CFTR gene and regulation of its expression
-
McCarthy VA, Harris A. The CFTR gene and regulation of its expression. Pediatr Pulmonol 2005; 40:1-8.
-
(2005)
Pediatr Pulmonol
, vol.40
, pp. 1-8
-
-
McCarthy, V.A.1
Harris, A.2
-
11
-
-
0026327058
-
Characterization of the promoter region of the cystic fibrosis conductance regulator gene
-
Chou JL, Rozmahel R, Tsui LC. Characterization of the promoter region of the cystic fibrosis conductance regulator gene. J Biol Chem 1991; 266:24471-6.
-
(1991)
J Biol Chem
, vol.266
, pp. 24471-24476
-
-
Chou, J.L.1
Rozmahel, R.2
Tsui, L.C.3
-
12
-
-
0025776409
-
The cystic fibrosis gene has a "housekeeping"-type promoter and is expressed at low levels in cells of epithelial origin
-
Yoshimura K, Nakamura H, Trapnell BC, Chu CS, Dalemans W, Pavirani A, et al. The cystic fibrosis gene has a "housekeeping"-type promoter and is expressed at low levels in cells of epithelial origin. J Biol Chem 1991; 266:9140-4.
-
(1991)
J Biol Chem
, vol.266
, pp. 9140-9144
-
-
Yoshimura, K.1
Nakamura, H.2
Trapnell, B.C.3
Chu, C.S.4
Dalemans, W.5
Pavirani, A.6
-
13
-
-
0027185802
-
Characterization of the cystic fibrosis transmembrane conductance regulator promoter region; chromatin context and tissue-specificity
-
Koh J, Sferra TJ, Collins FS. Characterization of the cystic fibrosis transmembrane conductance regulator promoter region; chromatin context and tissue-specificity. J Biol Chem 1993; 268:15912-21.
-
(1993)
J Biol Chem
, vol.268
, pp. 15912-15921
-
-
Koh, J.1
Sferra, T.J.2
Collins, F.S.3
-
14
-
-
0029127312
-
Basal expression of the cystic fibrosis transmembrane conductance regulator gene is dependent on protein kinase A activity
-
McDonald RA, Matthews RP, Idzerda RL, McKnight GS. Basal expression of the cystic fibrosis transmembrane conductance regulator gene is dependent on protein kinase A activity. Proc Nat Acad Sci USA 1995; 92:7560-4.
-
(1995)
Proc Nat Acad Sci USA
, vol.92
, pp. 7560-7564
-
-
McDonald, R.A.1
Matthews, R.P.2
Idzerda, R.L.3
McKnight, G.S.4
-
15
-
-
0028866431
-
Transcription of cystic fibrosis transmembrane conductance regulator requires CCAAT-like element for both basal adn cAMP-mediated regulation
-
Pittman N, Shue G, LeLeiko NS, Walsh MJ. Transcription of cystic fibrosis transmembrane conductance regulator requires CCAAT-like element for both basal adn cAMP-mediated regulation. J Biol Chem 1995; 270:28848-57.
-
(1995)
J Biol Chem
, vol.270
, pp. 28848-28857
-
-
Pittman, N.1
Shue, G.2
LeLeiko, N.S.3
Walsh, M.J.4
-
16
-
-
10544220417
-
Characterization of the cAMP response element of the cystic fibrosis transmembrane conductance regulator gene promoter
-
Matthews RP, McKnight GS. Characterization of the cAMP response element of the cystic fibrosis transmembrane conductance regulator gene promoter. J Biol Chem 1996; 271:31869-77.
-
(1996)
J Biol Chem
, vol.271
, pp. 31869-31877
-
-
Matthews, R.P.1
McKnight, G.S.2
-
17
-
-
0024424270
-
Identification of the cystic fibrosis gene: Cloning and characterization of complementary DNA
-
Riordan JR, Rommens JM, Kerem B, Alon N, Rozmahel R, Grzelczak Z, et al. Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA. Science 1989; 245:1066-73.
-
(1989)
Science
, vol.245
, pp. 1066-1073
-
-
Riordan, J.R.1
Rommens, J.M.2
Kerem, B.3
Alon, N.4
Rozmahel, R.5
Grzelczak, Z.6
-
18
-
-
0024993211
-
A major positive regulatory region located far upstream of the human α-globin gene locus
-
Higgs DR, Wood WG, Jarman AP, Sharpe J, Lida J, Pretorius IM, et al. A major positive regulatory region located far upstream of the human α-globin gene locus. Genes Dev 1990; 4:1588-601.
-
(1990)
Genes Dev
, vol.4
, pp. 1588-1601
-
-
Higgs, D.R.1
Wood, W.G.2
Jarman, A.P.3
Sharpe, J.4
Lida, J.5
Pretorius, I.M.6
-
19
-
-
0023663887
-
Position-independent, high-level expression of the human β-globin gene in transgenic mice
-
Grosveld F, van Assendelft GB, Greaves DR, Kollias G. Position-independent, high-level expression of the human β-globin gene in transgenic mice. Cell 1987; 51:975-85.
-
(1987)
Cell
, vol.51
, pp. 975-985
-
-
Grosveld, F.1
van Assendelft, G.B.2
Greaves, D.R.3
Kollias, G.4
-
20
-
-
0028978042
-
Characterization of DNase I hypersensitive sites in the 120 kb 5' to the CFTR gene
-
Smith AN, Wardle CJ, Harris A. Characterization of DNase I hypersensitive sites in the 120 kb 5' to the CFTR gene. Biochem Biophys Res Commun 1995; 211:274-81.
-
(1995)
Biochem Biophys Res Commun
, vol.211
, pp. 274-281
-
-
Smith, A.N.1
Wardle, C.J.2
Harris, A.3
-
21
-
-
0029987823
-
A regulatory element in intron 1 of the cystic fibrosis transmembrane conductance regulator gene
-
Smith AN, Barth ML, McDowell TL, Moulin DS, Nuthall HN, Hollingsworth MA, et al. A regulatory element in intron 1 of the cystic fibrosis transmembrane conductance regulator gene. J Biol Chem 1996; 271:9947-54.
-
(1996)
J Biol Chem
, vol.271
, pp. 9947-9954
-
-
Smith, A.N.1
Barth, M.L.2
McDowell, T.L.3
Moulin, D.S.4
Nuthall, H.N.5
Hollingsworth, M.A.6
-
22
-
-
0033485416
-
Analysis of a DNase I hypersensitive site located -20.9 kb upstream of the CFTR gene
-
Nuthall HN, Vassaux G, Huxley C, Harris A. Analysis of a DNase I hypersensitive site located -20.9 kb upstream of the CFTR gene. Eur J Biochem 1999; 266:431-43.
-
(1999)
Eur J Biochem
, vol.266
, pp. 431-443
-
-
Nuthall, H.N.1
Vassaux, G.2
Huxley, C.3
Harris, A.4
-
23
-
-
0033179057
-
Analysis of DNase-I-hypersensitive sites at the 3' end of the cystic fibrosis transmembrane conductance regulator gene (CFTR)
-
Nuthall HN, Moulin DS, Huxley C, Harris A. Analysis of DNase-I-hypersensitive sites at the 3' end of the cystic fibrosis transmembrane conductance regulator gene (CFTR). Biochem J 1999; 341:601-11.
-
(1999)
Biochem J
, vol.341
, pp. 601-611
-
-
Nuthall, H.N.1
Moulin, D.S.2
Huxley, C.3
Harris, A.4
-
24
-
-
0034652630
-
Multiple potential intragenic regulatory elements in the CFTR gene
-
Smith DJ, Nuthall HN, Majetti ME, Harris A. Multiple potential intragenic regulatory elements in the CFTR gene. Genomics 2000; 64:90-6.
-
(2000)
Genomics
, vol.64
, pp. 90-96
-
-
Smith, D.J.1
Nuthall, H.N.2
Majetti, M.E.3
Harris, A.4
-
25
-
-
0036161983
-
Evaluation of potential regulatory elements identified as DNase I hypersensitive sites in the CFTR gene
-
Phylactides M, Rowntree R, Nuthall H, Ussery D, Wheeler A, Harris A. Evaluation of potential regulatory elements identified as DNase I hypersensitive sites in the CFTR gene. Eur J Biochem 2002; 269:553-9.
-
(2002)
Eur J Biochem
, vol.269
, pp. 553-559
-
-
Phylactides, M.1
Rowntree, R.2
Nuthall, H.3
Ussery, D.4
Wheeler, A.5
Harris, A.6
-
26
-
-
36749087745
-
CTCF mediates insulator function at the CFTR locus
-
Blackledge NP, Carter EJ, Evans JR, Lawson V, Rowntree RK, Harris A. CTCF mediates insulator function at the CFTR locus. Biochem J 2007; 408:267-75.
-
(2007)
Biochem J
, vol.408
, pp. 267-275
-
-
Blackledge, N.P.1
Carter, E.J.2
Evans, J.R.3
Lawson, V.4
Rowntree, R.K.5
Harris, A.6
-
27
-
-
62549146697
-
An insulator element 3' to the CFTR gene binds CTCF and reveals an active chromatin hub in primary cells
-
Blackledge NP, Ott CJ, Gillen AE, Harris A. An insulator element 3' to the CFTR gene binds CTCF and reveals an active chromatin hub in primary cells. Nuc Acids Res 2009; 37:1086-94.
-
(2009)
Nuc Acids Res
, vol.37
, pp. 1086-1094
-
-
Blackledge, N.P.1
Ott, C.J.2
Gillen, A.E.3
Harris, A.4
-
28
-
-
0034152828
-
CFTR intron 1 increases luciferase expression driven by CFTR 5'-flanking DNA in a yeast artificial chromosome
-
Mogayzel PJ, Ashlock MA. CFTR intron 1 increases luciferase expression driven by CFTR 5'-flanking DNA in a yeast artificial chromosome. Genomics 2000; 64:211-5.
-
(2000)
Genomics
, vol.64
, pp. 211-215
-
-
Mogayzel, P.J.1
Ashlock, M.A.2
-
29
-
-
0035394438
-
An element in intron 1 of the CFTR gene augments intestinal expression in vivo
-
Rowntree RK, Vassaux G, McDowell TL, Howe S, McGuigan A, Phylactides M, et al. An element in intron 1 of the CFTR gene augments intestinal expression in vivo. Hum Mol Genet 2001; 10:1455-64.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 1455-1464
-
-
Rowntree, R.K.1
Vassaux, G.2
McDowell, T.L.3
Howe, S.4
McGuigan, A.5
Phylactides, M.6
-
30
-
-
65249131931
-
A complex intronic enhancer regulates expression of the CFTR gene by direct interaction with the promoter
-
Ott CJ, Suszko M, Blackledge NP, Wright JE, Crawford GE, Harris A. A complex intronic enhancer regulates expression of the CFTR gene by direct interaction with the promoter. J Cell Mol Med 2009; 13:680-92.
-
(2009)
J Cell Mol Med
, vol.13
, pp. 680-692
-
-
Ott, C.J.1
Suszko, M.2
Blackledge, N.P.3
Wright, J.E.4
Crawford, G.E.5
Harris, A.6
-
31
-
-
1642422936
-
HNF1α is involved in tissue-specific regulation of CFTR gene expression
-
Mouchel N, Henstra SA, McCarthy VA, Williams SH, Phylactides M, Harris A. HNF1α is involved in tissue-specific regulation of CFTR gene expression. Biochem J 2004; 378:909-18.
-
(2004)
Biochem J
, vol.378
, pp. 909-918
-
-
Mouchel, N.1
Henstra, S.A.2
McCarthy, V.A.3
Williams, S.H.4
Phylactides, M.5
Harris, A.6
-
32
-
-
77949326555
-
Interaction of intestinal and pancreatic transcription factors in the regulation of CFTR gene expression
-
McCarthy VA, Ott CJ, Phylactides M, Harris A. Interaction of intestinal and pancreatic transcription factors in the regulation of CFTR gene expression. Biochim Biophys Acta 2009; 1789:709-18.
-
(2009)
Biochim Biophys Acta
, vol.1789
, pp. 709-718
-
-
McCarthy, V.A.1
Ott, C.J.2
Phylactides, M.3
Harris, A.4
-
33
-
-
73949111636
-
Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus
-
Ott CJ, Blackledge NP, Kerschner JL, Leir SH, Crawford GE, Cotton CU, et al. Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus. Proc Nat Acad Sci USA 2009; 106:19934-9.
-
(2009)
Proc Nat Acad Sci USA
, vol.106
, pp. 19934-19939
-
-
Ott, C.J.1
Blackledge, N.P.2
Kerschner, J.L.3
Leir, S.H.4
Crawford, G.E.5
Cotton, C.U.6
-
34
-
-
20844435623
-
High-throughput localization of functional elements by quantitative chromatin profiling
-
Dorschner MO, Hawrylycz M, Humbert R, Wallace JC, Shafer A, Kawamoto J, et al. High-throughput localization of functional elements by quantitative chromatin profiling. Nat Meth 2005; 1:219-25.
-
(2005)
Nat Meth
, vol.1
, pp. 219-225
-
-
Dorschner, M.O.1
Hawrylycz, M.2
Humbert, R.3
Wallace, J.C.4
Shafer, A.5
Kawamoto, J.6
-
35
-
-
77955235716
-
Cell-type-specific long-range looping interactions identify distance regulatory elements of the CFTR gene
-
Gheldof N, Smith EM, Tabuchi TM, Koch CM, Dunham I, Stamatoyannopoulos JA, et al. Cell-type-specific long-range looping interactions identify distance regulatory elements of the CFTR gene. Nuc Acids Res 2010; 38:4325-36.
-
(2010)
Nuc Acids Res
, vol.38
, pp. 4325-4336
-
-
Gheldof, N.1
Smith, E.M.2
Tabuchi, T.M.3
Koch, C.M.4
Dunham, I.5
Stamatoyannopoulos, J.A.6
-
36
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 2007; 39:311-8.
-
(2007)
Nat Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
-
37
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 2009; 41:941-5.
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
Zhao, K.6
Felsenfeld, G.7
-
38
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey MH, Newman JJ, Bilodeau S, Zhan Y, Orlando DA, van Berkum NL, et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 2010; 467:430-435.
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
van Berkum, N.L.6
-
39
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, et al. Dynamic regulation of nucleosome positioning in the human genome. Cell 2008; 132:887-98.
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
-
40
-
-
33749400168
-
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
-
Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, et al. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res 2006; 16:1299-309.
-
(2006)
Genome Res
, vol.16
, pp. 1299-1309
-
-
Dostie, J.1
Richmond, T.A.2
Arnaout, R.A.3
Selzer, R.R.4
Lee, W.L.5
Honan, T.A.6
-
41
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009; 326:289-93.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
-
42
-
-
70449103609
-
An oestrogen-receptor-α- bound human chromatin interactome
-
Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, et al. An oestrogen-receptor-α- bound human chromatin interactome. Nature 2009; 462:58-64.
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
|