-
2
-
-
73849092886
-
Protein transport across and into cell membranes in bacteria and archaea
-
Yuan J., Zweers J.C., van Dijl J.M., and Dalbey R.E. Protein transport across and into cell membranes in bacteria and archaea Cell. Mol. Life Sci. 67 2010 179 199
-
(2010)
Cell. Mol. Life Sci.
, vol.67
, pp. 179-199
-
-
Yuan, J.1
Zweers, J.C.2
Van Dijl, J.M.3
Dalbey, R.E.4
-
3
-
-
0033609854
-
Signal peptide peptidase- and ClpP-like proteins of Bacillus subtilis required for efficient translocation and processing of secretory proteins
-
Bolhuis A., Matzen A., Hyyrylainen H.L., Kontinen V.P., Meima R., and Chapuis J. Signal peptide peptidase- and ClpP-like proteins of Bacillus subtilis required for efficient translocation and processing of secretory proteins J. Biol. Chem. 274 1999 24585 24592
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 24585-24592
-
-
Bolhuis, A.1
Matzen, A.2
Hyyrylainen, H.L.3
Kontinen, V.P.4
Meima, R.5
Chapuis, J.6
-
4
-
-
0035823557
-
Identification and characterization of SppA, a novel light-inducible chloroplast protease complex associated with thylakoid membranes
-
Lensch M., Herrmann R.G., and Sokolenko A. Identification and characterization of SppA, a novel light-inducible chloroplast protease complex associated with thylakoid membranes J. Biol. Chem. 276 2001 33645 33651
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 33645-33651
-
-
Lensch, M.1
Herrmann, R.G.2
Sokolenko, A.3
-
5
-
-
33744547139
-
Identification of the amino acid residues essential for proteolytic activity in an archaeal signal peptide peptidase
-
Matsumi R., Atomi H., and Imanaka T. Identification of the amino acid residues essential for proteolytic activity in an archaeal signal peptide peptidase J. Biol. Chem. 281 2006 10533 10539
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 10533-10539
-
-
Matsumi, R.1
Atomi, H.2
Imanaka, T.3
-
6
-
-
0023757506
-
Degradation of a signal peptide by protease IV and oligopeptidase A
-
Novak P., and Dev I.K. Degradation of a signal peptide by protease IV and oligopeptidase A J. Bacteriol. 170 1988 5067 5075
-
(1988)
J. Bacteriol.
, vol.170
, pp. 5067-5075
-
-
Novak, P.1
Dev, I.K.2
-
7
-
-
38349192547
-
Crystal structure of a bacterial signal peptide peptidase
-
Kim A.C., Oliver D.C., and Paetzel M. Crystal structure of a bacterial signal peptide peptidase J. Mol. Biol. 376 2008 352 366
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 352-366
-
-
Kim, A.C.1
Oliver, D.C.2
Paetzel, M.3
-
8
-
-
0037150672
-
Identification of signal peptide peptidase, a presenilin-type aspartic protease
-
Weihofen A., Binns K., Lemberg M.K., Ashman K., and Martoglio B. Identification of signal peptide peptidase, a presenilin-type aspartic protease Science 296 2002 2215 2218
-
(2002)
Science
, vol.296
, pp. 2215-2218
-
-
Weihofen, A.1
Binns, K.2
Lemberg, M.K.3
Ashman, K.4
Martoglio, B.5
-
9
-
-
0020449598
-
Signal peptide digestion in Escherichia coli. Effect of protease inhibitors on hydrolysis of the cleaved signal peptide of the major outer-membrane lipoprotein
-
Hussain M., Ozawa Y., Ichihara S., and Mizushima S. Signal peptide digestion in Escherichia coli. Effect of protease inhibitors on hydrolysis of the cleaved signal peptide of the major outer-membrane lipoprotein Eur. J. Biochem. 129 1982 233 239
-
(1982)
Eur. J. Biochem.
, vol.129
, pp. 233-239
-
-
Hussain, M.1
Ozawa, Y.2
Ichihara, S.3
Mizushima, S.4
-
10
-
-
45749095796
-
Escherichia coli signal peptide peptidase A is a serine-lysine protease with a lysine recruited to the nonconserved amino-terminal domain in the S49 protease family
-
Wang P., Shim E., Cravatt B., Jacobsen R., Schoeniger J., and Kim A.C. Escherichia coli signal peptide peptidase A is a serine-lysine protease with a lysine recruited to the nonconserved amino-terminal domain in the S49 protease family Biochemistry 47 2008 6361 6369
-
(2008)
Biochemistry
, vol.47
, pp. 6361-6369
-
-
Wang, P.1
Shim, E.2
Cravatt, B.3
Jacobsen, R.4
Schoeniger, J.5
Kim, A.C.6
-
11
-
-
0014211618
-
On the size of the active site in proteases. I. Papain Biochem
-
Schechter I., and Berger A. On the size of the active site in proteases. I. Papain Biochem. Biophys. Res. Commun. 27 1967 157 162
-
(1967)
Biophys. Res. Commun.
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
-
12
-
-
0037088648
-
Crystal structure of a bacterial signal peptidase apoenzyme: Implications for signal peptide binding and the Ser-Lys dyad mechanism
-
Paetzel M., Dalbey R.E., and Strynadka N.C. Crystal structure of a bacterial signal peptidase apoenzyme: implications for signal peptide binding and the Ser-Lys dyad mechanism J. Biol. Chem. 277 2002 9512 9519
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 9512-9519
-
-
Paetzel, M.1
Dalbey, R.E.2
Strynadka, N.C.3
-
13
-
-
33745041491
-
Crystal structure of a novel viral protease with a serine/lysine catalytic dyad mechanism
-
Feldman A.R., Lee J., Delmas B., and Paetzel M. Crystal structure of a novel viral protease with a serine/lysine catalytic dyad mechanism J. Mol. Biol. 358 2006 1378 1389
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 1378-1389
-
-
Feldman, A.R.1
Lee, J.2
Delmas, B.3
Paetzel, M.4
-
14
-
-
8844256540
-
Type i signal peptidases of Gram-positive bacteria
-
van Roosmalen M.L., Geukens N., Jongbloed J.D., Tjalsma H., Dubois J.Y., and Bron S. Type I signal peptidases of Gram-positive bacteria Biochim. Biophys. Acta 1694 2004 279 297
-
(2004)
Biochim. Biophys. Acta
, vol.1694
, pp. 279-297
-
-
Van Roosmalen, M.L.1
Geukens, N.2
Jongbloed, J.D.3
Tjalsma, H.4
Dubois, J.Y.5
Bron, S.6
-
15
-
-
27144505097
-
Protein identification and analysis tools on the ExPASy server
-
J.M. Walker, Humana Press Totowa, NJ
-
Gasteiger E., Hoogland C., Gattiker A., Duvaud S., Wilkins M.R., Appel R.D., and Bairoch A. Protein identification and analysis tools on the ExPASy server J.M. Walker, The Proteomics Protocols Handbook 2005 Humana Press Totowa, NJ 571 607
-
(2005)
The Proteomics Protocols Handbook
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
Appel, R.D.6
Bairoch, A.7
-
16
-
-
5844368173
-
The scattering of light and the radial distribution function of high polymer solutions
-
Zimm B.H. The scattering of light and the radial distribution function of high polymer solutions J. Chem. Phys. 16 1948 1093 1099
-
(1948)
J. Chem. Phys.
, vol.16
, pp. 1093-1099
-
-
Zimm, B.H.1
-
17
-
-
0003828920
-
-
L. Sawyer, N. Isaacs, S. Baily, Daresbury Laboratory Warrington, UK
-
Otwinowski Z. Denzo L. Sawyer, N. Isaacs, S. Baily, Denzo 1993 Daresbury Laboratory Warrington, UK 56 62
-
(1993)
Denzo
, pp. 56-62
-
-
Otwinowski, Z.1
-
18
-
-
0042011224
-
Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals
-
Kantardjieff K.A., and Rupp B. Matthews coefficient probabilities: improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals Protein Sci. 12 2003 1865 1871
-
(2003)
Protein Sci.
, vol.12
, pp. 1865-1871
-
-
Kantardjieff, K.A.1
Rupp, B.2
-
19
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
McCoy A.J., Grosse-Kunstleve R.W., Storoni L.C., and Read R.J. Likelihood-enhanced fast translation functions Acta Crystallogr., Sect. D: Biol. Crystallogr. 61 2005 458 464
-
(2005)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.61
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
20
-
-
43749083257
-
CHAINSAW: A program for mutating pdb files used as templates in molecular replacement
-
Stein N. CHAINSAW: a program for mutating pdb files used as templates in molecular replacement J. Appl. Crystallogr. 41 2008 641 643
-
(2008)
J. Appl. Crystallogr.
, vol.41
, pp. 641-643
-
-
Stein, N.1
-
21
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkoczi G., Chen V.B., Davis I.W., and Echols N. PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallogr., Sect. D: Biol. Crystallogr. 66 2010 213 221
-
(2010)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
-
22
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov G.N., Skubak P., Lebedev A.A., Pannu N.S., Steiner R.A., and Nicholls R.A. REFMAC5 for the refinement of macromolecular crystal structures Acta Crystallogr., Sect. D: Biol. Crystallogr. 67 2011 355 367
-
(2011)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
-
24
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
Painter J., and Merritt E.A. Optimal description of a protein structure in terms of multiple groups undergoing TLS motion Acta Crystallogr., Sect. D: Biol. Crystallogr. 62 2006 439 450
-
(2006)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
25
-
-
0013461295
-
Macromolecular TLS refinement in REFMAC at moderate resolutions
-
Winn M.D., Murshudov G.N., and Papiz M.Z. Macromolecular TLS refinement in REFMAC at moderate resolutions Methods Enzymol. 374 2003 300 321
-
(2003)
Methods Enzymol.
, vol.374
, pp. 300-321
-
-
Winn, M.D.1
Murshudov, G.N.2
Papiz, M.Z.3
-
27
-
-
0027968068
-
CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
30
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E., and Henrick K. Inference of macromolecular assemblies from crystalline state J. Mol. Biol. 372 2007 774 797
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
31
-
-
59549088662
-
ProtorP: A protein-protein interaction analysis server
-
Reynolds C., Damerell D., and Jones S. ProtorP: a protein-protein interaction analysis server Bioinformatics 25 2009 413 414
-
(2009)
Bioinformatics
, vol.25
, pp. 413-414
-
-
Reynolds, C.1
Damerell, D.2
Jones, S.3
-
32
-
-
77954257799
-
ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
Ashkenazy H., Erez E., Martz E., Pupko T., and Ben-Tal N. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids Nucleic Acids Res. 38 2010 W529 W533
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
33
-
-
2542445427
-
ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information
-
Glaser F., Pupko T., Paz I., Bell R.E., Bechor-Shental D., Martz E., and Ben-Tal N. ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information Bioinformatics 19 2003 163 164
-
(2003)
Bioinformatics
, vol.19
, pp. 163-164
-
-
Glaser, F.1
Pupko, T.2
Paz, I.3
Bell, R.E.4
Bechor-Shental, D.5
Martz, E.6
Ben-Tal, N.7
-
34
-
-
23144448512
-
ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
-
Landau M., Mayrose I., Rosenberg Y., Glaser F., Martz E., Pupko T., and Ben-Tal N. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures Nucleic Acids Res. 33 2005 W299 W302
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
Ben-Tal, N.7
-
35
-
-
0031687653
-
Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design
-
Liang J., Edelsbrunner H., and Woodward C. Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design Protein Sci. 7 1998 1884 1897
-
(1998)
Protein Sci.
, vol.7
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
36
-
-
0035175679
-
PDBsum: Summaries and analyses of PDB structures
-
Laskowski R.A. PDBsum: summaries and analyses of PDB structures Nucleic Acids Res. 29 2001 221 222
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 221-222
-
-
Laskowski, R.A.1
-
37
-
-
0030039296
-
PROMOTIF - A program to identify and analyze structural motifs in proteins
-
Hutchinson E.G., and Thornton J.M. PROMOTIF - a program to identify and analyze structural motifs in proteins Protein Sci. 5 1996 212 220
-
(1996)
Protein Sci.
, vol.5
, pp. 212-220
-
-
Hutchinson, E.G.1
Thornton, J.M.2
|