DiversiWcation of three APETALA1/FRUITFULL-like genes in wheat

Molecular Genetics and Genomics

Volumn 287, Issue 4, 2012, Pages 283-294

  Kinjo, Hiroko ^a   Shitsukawa, Naoki ^a   Takumi, Shigeo ^b   Murai, Koji ^a  

^a FUKUI PREFECTURAL UNIVERSITY   (Japan)

^b KOBE UNIVERSITY   (Japan)

Author keywords

APETALA1 FRUITFULL; Class A function; Flowering; Wheat (Triticum aestivum)

Indexed keywords

FRUITFULL1 PROTEIN; FRUITFULL2 PROTEIN; FRUITFULL3 PROTEIN; MADS DOMAIN PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; CONTROLLED STUDY; FRUITFULL1 GENE; FRUITFULL2 GENE; FRUITFULL3 GENE; GENE EXPRESSION; GENE IDENTIFICATION; GENE INTERACTION; GENE LOCATION; GENETIC VARIABILITY; GENOME ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT GENETICS; PLANT GENOME; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; SEQUENCE ANALYSIS; VEGETATIVE STAGE; WHEAT; AMINO ACID SEQUENCE; ARABIDOPSIS; FLOWER; GENETICS; MERISTEM; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; PLANT LEAF; SEQUENCE ALIGNMENT; TRANSGENIC PLANT;

PALEA; POACEAE; TRITICUM AESTIVUM;

AMINO ACID SEQUENCE; ARABIDOPSIS; FLOWERS; MADS DOMAIN PROTEINS; MERISTEM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT LEAVES; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; SEQUENCE ALIGNMENT; TRITICUM;

EID: 84861483197     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-012-0679-7     Document Type: Article

References (54)

1. Abe M, Kobayashi Y, Yamamoto S, Daimon Y, Yamaguchi A, Ikeda Y, Ichinoki H, Notaguchi M, Goto K, Araki T (2005) FD, a bZIP protein mediating signals from the Xoral pathway integrator FT at the shoot apex. Science 309:1052-1056 (Pubitemid 41134458)
2. Adam H, Ouellet F, Kne NA, Agharbaoui Z, Major G, Tominaga Y, Sarhan F (2007) Overexpression of TaVRN1 in Arabidopsis promotes early Xowering and alters development. Plant Cell Physiol 48:1192-1206 (Pubitemid 47283659)
3. Alvarez-Buylla ER, Garcia-Ponce B, Garay-Arroyo A (2006) Unique and redundant functional domains of APETALA1 and CAULIFLOWER, two recently duplicated Arabidopsis thaliana Xoral MADS-genes. J Exp Bot 57:3099-3107 (Pubitemid 44453522)
4. Bowmann JL, Alvarez J, Weigel D, Meyerowitz EM, Smyth DR (1993) Control of Xower development in Arabidopsis thaliana by APETALA1 and interacting genes. Development 119:721-743 (Pubitemid 23337416)
5. Clough SJ, Bent AF (1998) Floral dip: a simple method for Agrobacterium- mediated transformation of Arabidopsis thaliana. Plant J 16:735-743
6. Corbesier L, Vincent C, Jang S, Fornara F, Fan Q, Searle I, Giakountis A, Farrona S, Gissot L, Turnbull C, Coupland G (2007) FT protein movement contributes to long-distance signaling in Xoral induction of Arabidopsis. Science 316:1030-1033 (Pubitemid 46799490)
7. Danyluk J, Kane NA, Breton G, Limin AE, Fowler DB, Sarhan F (2003) TaVRT-1, a putative transcription factor associated with vegetative to reproductive transition in cereals. Plant Physiol 132:1849-1860 (Pubitemid 37024147)
8. Distelfeld A, Li C, Dubcovsky J (2009) Regulation of Xowering in temperate cereals. Curr Opi Plant Biol 12:178-184
9. Felsenstein J (1985) ConWdence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
10. Ferrandiz C, Gu Q, Martienssen R, Yanofsky MF (2000) Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development 127:725-734 (Pubitemid 30129019)
11. Gocal GFW, King RW, Blundell CA, Schwartz OM, Andersen CH, Weigel D (2001) Evolution of Xoral meristem identity genes: analysis of Lolium temulentum genes related to APETALA1 and LEAFY of Arabidopsis. Plant Physiol 125:1788-1801 (Pubitemid 32375762)
12. Hama E, Takumi S, Ogihara Y, Murai K (2004) Pistillody is caused by alterations to the class-B MADS-box gene expression pattern in alloplasmic wheats. Planta 218:712-720 (Pubitemid 38390490)
13. Hemming MN, Peacock WJ, Dennis ES, Trevaskis B (2008) Low-temperature and daylength cues are integrated to regulate FLOWERING LOCUS T in barley. Plant Physiol 147:355-366 (Pubitemid 352844355)
14. Jaeger KE, Wigge PA (2007) FT protein acts as a long-range signal in Arabidopsis. Curr Biol 17:1050-1054 (Pubitemid 46899530)
15. Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D (1999) Activation tagging of the Xoral inducer FT. Science 286:1962-1965
16. Kaufmann K, Melzer R, Theissen G (2005) MIKC-type MADS-domain proteins: structural modularity, protein interactions and network evolution in land plants. Gene 347:183-198 (Pubitemid 40403758)
17. Kobayashi Y, Kaya H, Goto K, Iwabuchi M, Araki T (1999) A pair of related genes with antagonistic roles in mediating Xowering signals. Science 286:1960-1962 (Pubitemid 129515905)
18. Komiya R, Yokoi S, Shimamoto K (2009) A gene network for longday Xowering activates RFT1 encoding a mobile Xowering signal in rice. Development 136:3443-3450
19. Li C, Dubcovsky J (2008) Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J 55:543-554
20. Lim J, Moon Y-H, An G, Jang SK (2000) Two rice MADS domain proteins interact with OsMADS1. Plant Mol Biol 44:513-527 (Pubitemid 32060750)
21. Litt A, Irish VF (2003) Duplication and diversiWcation in the APETALA1/ FRUITFULL Xoral homeotic gene lineage: implications for the evolution of Xoral development. Genetics 165:821-833 (Pubitemid 37337646)
22. Loukoianov A, Yan L, Blechl A, Sanchez A, Dubcovsky J (2005) Regulation of VRN-1 vernalization genes in normal and transgenic polyploid wheat. Plant Physiol 138:2364-2373 (Pubitemid 43733577)
23. Mandel MA, Gustafson-Brown C, Yanofsky MF (1992) Molecular characterization of the Arabidopsis Xoral homeotic gene APETALA1. Nature 360:273-277
24. Mathieu J, Warthmann N, Kuttner F, Schmid M (2007) Export of FT protein from phloem companion cells is suYcient for Xoral induction in Arabidopsis. Curr Biol 17:1055-1060 (Pubitemid 46899531)
25. McIntosh RA, Hart GE, Devos KM, Gale MD, Rogers WJ (1998) Catalogue of gene symbols for wheat. In: Proceeding 9th International Wheat Genetics Symposium 5, pp.1-235
26. Melzer S, Lens F, Gennen J, Vanneste S, Rohde A, Beeckman T (2008) Flowering-time genes modulate meristems determinacy and growth form in Arabidipsis thaliana. Nature Genet 12:1489-1492
27. Mena M, Ambrose BA, Meeley RB, Briggs SP, Yanofsky MF, Schmidt RJ (1996) DiversiWcation of C-function activity in maize Xower development. Science 274:1537-1540 (Pubitemid 26403931)
28. Murai K, Murai R, Takumi S, Ogihara Y (1998) Cloning and characterization of cDNAs corresponding to the wheat MADS box genes. In:Proceeding 9th International Wheat Genetics Symposium 1,pp.89-94
29. Murai K, Takumi S, Koga H, Ogihara Y (2002) Pistillody, homeotic transformation of stamens into pistil-like structures, caused by nuclear-cytoplasm interaction in wheat. Plant J 29:169-182
30. Murai K, Miyamae M, Kato H, Takumi S, Ogihara Y (2003) WAP1, a wheat APETALA1 homolog, plays a central role in the phase transition from vegetative to reproductive growth. Plant Cell Physiol 44:1255-1265 (Pubitemid 38157746)
31. Ogihara Y, Mochida K, Nemoto Y, Murai K, Yamazaki Y, Shin-I T, Kohara Y (2003) Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags. Plant J 33:1001-1011 (Pubitemid 36400282)
32. Oliver SN, Finnegan JF, Dennis ES, Peacook WJ, Trevaskis B (2009) Vernalization-induced Xowering in cereals is associated with changes in histone methylation at the VERNALIZATION1 gene. Proc Natl Acad Sci USA 106:8386-8391
33. Paolacci AR, Tanzarella OA, Porceddu E, Varotto S, CiaY M (2007) Molecular and phylogenetic analysis of MADS-box genes of MIKC type and chromosome location of SEP-like gene in wheat (Triticum aestivum L.). Mol Genet Genomics 278:689-708 (Pubitemid 350098279)
34. Pelucchi N, Fornara F, Favalli C, Masiero S, Lago C, Pe ME, Colombo L, Kater MM (2002) Comparative analysis of rice MADS box genes expressed during Xower development. Sex Plant Reprod 15:113-122 (Pubitemid 35218729)
35. Preston JC, Kellogg EA (2006) Reconstructing the evolutionary history of paralogous APETALA1/FRUITFULL-like genes in grasses (Poaceae). Genetics 174:421-437 (Pubitemid 44427684)
36. Preston JC, Kellogg EA (2007) Conservation and divergence of APETALA1/ FRUITFULL-like gene function in grasses: evidence from gene expression analyses. Plant J 52:69-81 (Pubitemid 47476159)
37. Preston JC, Kellogg EA (2008) Discrete developmental roles for temperate cereal grass VERNALIZATION1/FRUITFULL-like genes in Xowering competency and the transition to Xowering. Plant Physiol 146:265-276 (Pubitemid 351380054)
38. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
39. Sasani S, Hemming MN, Oliver S, Greenup A, Tavakkol-Afshari R, Mahfoozi S, Poustini K, ShariW H-R, Dennis ES, Peacock WJ, Trevaskis B (2009) The inXuence of vernalization and daylength cues on the expression of Xowering-time genes in the leaves and shoot apex of barley (Hordeum vulgare). J Exp Bot 60:2169-2178
40. Schmitz J, Franzen R, Ngyuen TH, Garcia-Maroto F, Pozzi C, Salamini F, Rohde W (2000) Cloning, mapping and expression analysis of barley MADS-box genes. Plant Mol Biol 42:899-913 (Pubitemid 30399871)
41. Shimada S, Ogawa T, Kitagawa S, Suzuki T, Ikari C, Shitsukawa N, Abe T, Kawahigashi H, Kikuchi R, Handa H, Murai K (2009) A genetic network of Xowering time genes in wheat leaves, in which an APETALA1/FRUITFULL-like gene, VRN1, is upstream of FLOWERING LOCUS T. Plant J 58:668-681
42. Shitsukawa N, Takagishi A, Ikari C, Takumi S, Murai K (2006) WFL, a wheat FLORICAULA/LEAFY ortholog, is associated with spikelet formation as lateral branch of the inXorescence meristem. Genes Genet Syst 81:13-20
43. Shitsukawa N, Ikari C, Shimada S, Kitagawa S, Sakamoto K, Saito H, Ryuto H, Fukunishi N, Abe T, Takumi S, Nasuda S, Murai K (2007a) The einkorn wheat (Triticum monococcum) mutant, maintained vegetative phase, is caused by a deletion in the VRN1 gene. Genes Genet Syst 82:167-170 (Pubitemid 46743511)
44. Shitsukawa N, Tahira C, Kassai K-I, Hirabayashi C, Shimizu T, Takumi S, Mochida K, Kwaura K, Ogihara Y, Murai K (2007b) Genetic and epigenetic alteration among three homoeologous genes of a class E MADS box gene in hexaploid wheat. Plant Cell 19:1723-1737 (Pubitemid 47218836)
45. Shitsukawa N, Kinjo H, Takumi S, Murai K (2009) Heterochronic development of the Xoret meristem determines grain number per spikelet in diploid, tetraploid and hexaploid wheats. Annals Bot 104:243-251
46. Taoka K-I, Ohki I, Tsuji H, Furuta K, Hayashi K, Yanase T, Yamaguchi M, Nakashima C, Purwestri YA, Tamaki S, Ogaki Y, Shimada C, Nakagawa A, Kojima C, Shimamoto K (2011) 14-3-3 proteins act as intracellular receptors for rice Hd3a Xorigen. Nature 476:332-335
47. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-speciWc gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
48. Trevaskis B (2010) The central role of the VERNALIZATION1 gene in the vernalization response of cereals. Funct Plant Biol 37:479-487
49. Trevaskis B, Bagnall DJ, Ellis MH, Peacock WJ, Dennis ES (2003) MADS box genes control vernalization-induced Xowering in cereals. Proc Natl Acad Sci USA 100:13099-13104 (Pubitemid 37340032)
50. Wellmer F, Riechmann JL (2010) Gene networks controlling the initiation of Xower development. Trends Genet 26:519-527
51. Wigge PA, Kim MC, Jaeger KE, Busch W, Schmid M, Lohmann JU, Weigel D (2005) Integration of spatial and temporal information during Xoral induction in Arabidopsis. Science 309:1056-1059 (Pubitemid 41134459)
52. Yan L, Loukoianov A, Tranquilli G, Helguera M, Fahima T, Dubcovsky J (2003) Positional cloning of the wheat vernalization gene VRN1. Proc Natl Acad Sci USA 100:6263-6268 (Pubitemid 36576964)
53. Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, Dubcovsky J (2004) The wheat VRN2 gene is a Xowering repressor down-regulated by vernalization. Science 303:1640-1644 (Pubitemid 38338316)
54. Yan L, Fu D, Li C, Blechl A, Tranquilli G, Bonafede M, Sanchez A, Valarik M, Yasuda S, Dubcovsky J (2006) The wheat and barley vernalization gene VRN3 is an orthologue of FT. Proc Natl Acad Sci USA 103:19581-19586 (Pubitemid 46026073)