-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, MillerWet al. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
2
-
-
76349119916
-
Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
-
Andersson AF, Riemann L, Bertilsson S. (2010). Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities. ISME J 4: 171-181.
-
(2010)
ISME J
, vol.4
, pp. 171-181
-
-
Andersson, A.F.1
Riemann, L.2
Bertilsson, S.3
-
3
-
-
0002265705
-
Species and area
-
Arrhenius O. (1921). Species and area. J Ecol 9: 95-99.
-
(1921)
J Ecol
, vol.9
, pp. 95-99
-
-
Arrhenius, O.1
-
4
-
-
22544432221
-
Larger islands house more bacterial taxa
-
Bell T, Ager D, Song JI, Newman JA, Thompson IP, Lilley AK et al. (2005). Larger islands house more bacterial taxa. Science 308: 1884.
-
(2005)
Science
, vol.308
, pp. 1884
-
-
Bell, T.1
Ager, D.2
Song, J.I.3
Newman, J.A.4
Thompson, I.P.5
Lilley, A.K.6
-
5
-
-
34548235824
-
Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: Insights from simulated microbial communities
-
Blackwood CB, Hudleston D, Zak DR, Buyer JS. (2007). Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: Insights from simulated microbial communities. Appl Environ Microbiol 73: 5276-5283.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5276-5283
-
-
Blackwood, C.B.1
Hudleston, D.2
Zak, D.R.3
Buyer, J.S.4
-
6
-
-
0031401197
-
Effect of resource enrichment on a chemostat community of bacteria and bacteriophage
-
Bohannan BJM, Lenski RE. (1997). Effect of resource enrichment on a chemostat community of bacteria and bacteriophage. Ecology 78: 2303-2315.
-
(1997)
Ecology
, vol.78
, pp. 2303-2315
-
-
Bohannan, B.J.M.1
Lenski, R.E.2
-
7
-
-
65649083333
-
Separating the influence of resource 'availability' from resource 'imbalance' on productivity-diversity relationships
-
Cardinale BJ, Hillebrand H, Harpole WS, Gross K, Ptacnik R. (2009). Separating the influence of resource 'availability' from resource 'imbalance' on productivity-diversity relationships. Ecol Lett 12: 475-487.
-
(2009)
Ecol Lett
, vol.12
, pp. 475-487
-
-
Cardinale, B.J.1
Hillebrand, H.2
Harpole, W.S.3
Gross, K.4
Ptacnik, R.5
-
8
-
-
0037187570
-
Spatial scale dictates the productivity-biodiversity relationship
-
Chase JM, Leibold MA. (2002). Spatial scale dictates the productivity-biodiversity relationship. Nature 416: 427-430.
-
(2002)
Nature
, vol.416
, pp. 427-430
-
-
Chase, J.M.1
Leibold, M.A.2
-
9
-
-
58149200948
-
The ribosomal database project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ et al. (2009). The ribosomal database project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
-
10
-
-
34547617665
-
Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment
-
Crump BC, Adams HE, Hobbie JE, Kling GW. (2007). Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment. Ecology 88: 1365-1378.
-
(2007)
Ecology
, vol.88
, pp. 1365-1378
-
-
Crump, B.C.1
Adams, H.E.2
Hobbie, J.E.3
Kling, G.W.4
-
11
-
-
33751226288
-
What is the extent of prokaryotic diversity?
-
Curtis TP, Head IM, Lunn M, Woodcock S, Schloss PD, Sloan WT. (2006). What is the extent of prokaryotic diversity? Philos Trans R Soc B-Biol Sci 361: 2023-2037.
-
(2006)
Philos Trans R Soc B-Biol Sci
, vol.361
, pp. 2023-2037
-
-
Curtis, T.P.1
Head, I.M.2
Lunn, M.3
Woodcock, S.4
Schloss, P.D.5
Sloan, W.T.6
-
12
-
-
23944487811
-
Exploring microbial diversity -A vast below
-
Curtis TP, Sloan WT. (2005). Exploring microbial diversity -A vast below. Science 309: 1331-1333.
-
(2005)
Science
, vol.309
, pp. 1331-1333
-
-
Curtis, T.P.1
Sloan, W.T.2
-
13
-
-
33644935692
-
The imprint of the geographical, evolutionary and ecological context on species-Area relationships
-
Drakare S, Lennon JJ, Hillebrand H. (2006). The imprint of the geographical, evolutionary and ecological context on species-Area relationships. Ecol Lett 9: 215-227.
-
(2006)
Ecol Lett
, vol.9
, pp. 215-227
-
-
Drakare, S.1
Lennon, J.J.2
Hillebrand, H.3
-
14
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H et al. (2010). Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J 4: 642-647.
-
(2010)
ISME J
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
Zvenigorodsky, N.4
Chen, F.5
Ochman, H.6
-
15
-
-
0041317111
-
Biogeography for bacteria
-
Fenchel T. (2003). Biogeography for bacteria. Science 301: 925-926.
-
(2003)
Science
, vol.301
, pp. 925-926
-
-
Fenchel, T.1
-
16
-
-
0033785383
-
Effects of resources and trophic interactions on freshwater bacterioplankton diversity
-
Fisher MM, Klug JL, Lauster G, Newton M, Triplett EW. (2000). Effects of resources and trophic interactions on freshwater bacterioplankton diversity. Microb Ecol 40: 125-138.
-
(2000)
Microb Ecol
, vol.40
, pp. 125-138
-
-
Fisher, M.M.1
Klug, J.L.2
Lauster, G.3
Newton, M.4
Triplett, E.W.5
-
18
-
-
77950027652
-
Hydrography shapes bacterial biogeography of the deep Arctic Ocean
-
Galand PE, Potvin M, Casamayor EO, Lovejoy C. (2010). Hydrography shapes bacterial biogeography of the deep Arctic Ocean. ISME J 4: 564-576.
-
(2010)
ISME J
, vol.4
, pp. 564-576
-
-
Galand, P.E.1
Potvin, M.2
Casamayor, E.O.3
Lovejoy, C.4
-
19
-
-
0001761666
-
On the relation between species and area
-
Gleason HA. (1922). On the relation between species and area. Ecology 3: 158-162.
-
(1922)
Ecology
, vol.3
, pp. 158-162
-
-
Gleason, H.A.1
-
20
-
-
10644260347
-
Spatial scaling of microbial eukaryote diversity
-
Green JL, Holmes AJ, Westoby M, Oliver I, Briscoe D, Dangerfield M et al. (2004). Spatial scaling of microbial eukaryote diversity. Nature 432: 747-750.
-
(2004)
Nature
, vol.432
, pp. 747-750
-
-
Green, J.L.1
Holmes, A.J.2
Westoby, M.3
Oliver, I.4
Briscoe, D.5
Dangerfield, M.6
-
21
-
-
0017654644
-
Use of nuclepore filters for counting bacteria by fluorescence microscopy
-
Hobbie JE, Daley RJ, Jasper S. (1977). Use of nuclepore filters for counting bacteria by fluorescence microscopy. Appl Environ Microbiol 33: 1225-1228.
-
(1977)
Appl Environ Microbiol
, vol.33
, pp. 1225-1228
-
-
Hobbie, J.E.1
Daley, R.J.2
Jasper, S.3
-
24
-
-
0034601511
-
Diversity peaks at intermediate productivity in a laboratory microcosm
-
Kassen R, Buckling A, Bell G, Rainey PB. (2000). Diversity peaks at intermediate productivity in a laboratory microcosm. Nature 406: 508-512.
-
(2000)
Nature
, vol.406
, pp. 508-512
-
-
Kassen, R.1
Buckling, A.2
Bell, G.3
Rainey, P.B.4
-
25
-
-
77953594953
-
The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes
-
Kirchman DL, Cottrell MT, Lovejoy C. (2010). The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ Microbiol 12: 1132-1143.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1132-1143
-
-
Kirchman, D.L.1
Cottrell, M.T.2
Lovejoy, C.3
-
26
-
-
0026269599
-
The influence of landscape position on temporal variability in 4 North-American ecosystems
-
Kratz TK, Benson BJ, Blood ER, Cunningham GL, Dahlgren RA. (1991). The influence of landscape position on temporal variability in 4 North-American ecosystems. Am Nat 138: 355-378.
-
(1991)
Am Nat
, vol.138
, pp. 355-378
-
-
Kratz, T.K.1
Benson, B.J.2
Blood, E.R.3
Cunningham, G.L.4
Dahlgren, R.A.5
-
27
-
-
0031050501
-
The influence of landscape position on lakes in northern Wisconsin
-
Kratz TK,Webster KE, Bowser CJ, Magnuson JJ, Benson BJ. (1997). The influence of landscape position on lakes in northern Wisconsin. Freshwater Biol 37: 209-217.
-
(1997)
Freshwater Biol
, vol.37
, pp. 209-217
-
-
Kratz, T.K.1
Webster, K.E.2
Bowser, C.J.3
Magnuson, J.J.4
Benson, B.J.5
-
28
-
-
0032976616
-
Are there general laws in ecology?
-
Lawton JH. (1999). Are there general laws in ecology? Oikos 84: 177-192.
-
(1999)
Oikos
, vol.84
, pp. 177-192
-
-
Lawton, J.H.1
-
30
-
-
54549106898
-
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
-
Liu ZZ, DeSantis TZ, Andersen GL, Knight R. (2008). Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 36: E120.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liu, Z.Z.1
DeSantis, T.Z.2
Andersen, G.L.3
Knight, R.4
-
31
-
-
41649090665
-
Biogeography of bacterioplankton in inland waters
-
Logue JB, Lindström ES. (2008). Biogeography of bacterioplankton in inland waters. Freshwater Rev 1: 99-114.
-
(2008)
Freshwater Rev
, vol.1
, pp. 99-114
-
-
Logue, J.B.1
Lindström, E.S.2
-
32
-
-
77952670009
-
Species sorting affects bacterioplankton community composition as determined by 16S rDNA and 16S rRNA fingerprints
-
Logue JB, Lindström ES. (2010). Species sorting affects bacterioplankton community composition as determined by 16S rDNA and 16S rRNA fingerprints. ISME J 4: 729-738.
-
(2010)
ISME J
, vol.4
, pp. 729-738
-
-
Logue, J.B.1
Lindström, E.S.2
-
33
-
-
33644838781
-
Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity
-
Loisel P, Harmand J, Zemb O, Latrille E, Lobry C, Delgenes JP et al. (2006). Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity. Environ Microbiol 8: 720-731.
-
(2006)
Environ Microbiol
, vol.8
, pp. 720-731
-
-
Loisel, P.1
Harmand, J.2
Zemb, O.3
Latrille, E.4
Lobry, C.5
Delgenes, J.P.6
-
35
-
-
1642436878
-
Lakes in the landscape: Approaches to regional limnology. In
-
Williams WD (eds)., Proceedings E Schweizerbart'sche Verlagsbuchhandlung: Stuttgart
-
Magnuson JJ, Kratz TK. (2000). Lakes in the landscape: Approaches to regional limnology. In: Williams WD (eds). International Association of Theoretical and Applied Limnology, Vol 27, Pt 1, Proceedings E Schweizerbart'sche Verlagsbuchhandlung: Stuttgart, pp 74-87.
-
(2000)
International Association of Theoretical and Applied Limnology
, vol.27
, Issue.PART 1
, pp. 74-87
-
-
Magnuson, J.J.1
Kratz, T.K.2
-
36
-
-
52949096084
-
Next-generation DNA sequencing methods
-
Mardis ER. (2008). Next-generation DNA sequencing methods. Ann Rev Genomics Hum Genet 9: 387-402.
-
(2008)
Ann Rev Genomics Hum Genet
, vol.9
, pp. 387-402
-
-
Mardis, E.R.1
-
37
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, Green JL et al. (2006). Microbial biogeography: Putting microorganisms on the map. Nat Rev Microbiol 4: 102-112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
-
38
-
-
0034800740
-
What is the observed relationship between species richness and productivity?
-
Mittelbach GG, Steiner CF, Scheiner SM, Gross KL, Reynolds HL, Waide RB et al. (2001). What is the observed relationship between species richness and productivity? Ecology 82: 2381-2396.
-
(2001)
Ecology
, vol.82
, pp. 2381-2396
-
-
Mittelbach, G.G.1
Steiner, C.F.2
Scheiner, S.M.3
Gross, K.L.4
Reynolds, H.L.5
Waide, R.B.6
-
39
-
-
67650783140
-
Contrasting the influences of stream inputs and landscape position on bacterioplankton community structure and dissolved organic matter composition in high-elevation lake chains
-
Nelson CE, Sadro S, Melack JM. (2009). Contrasting the influences of stream inputs and landscape position on bacterioplankton community structure and dissolved organic matter composition in high-elevation lake chains. Limnol Oceanogr 54: 1292-1305.
-
(2009)
Limnol Oceanogr
, vol.54
, pp. 1292-1305
-
-
Nelson, C.E.1
Sadro, S.2
Melack, J.M.3
-
40
-
-
34247276865
-
Contrasting plant productivity-diversity relationships across latitude: The role of evolutionary history
-
Pärtel M, Laanisto L, Zobel M. (2007). Contrasting plant productivity-diversity relationships across latitude: The role of evolutionary history. Ecology 88: 1091-1097.
-
(2007)
Ecology
, vol.88
, pp. 1091-1097
-
-
Pärtel, M.1
Laanisto, L.2
Zobel, M.3
-
41
-
-
33744745905
-
Marine microbial diversity: Can it be determined?
-
Pedros-Alio C. (2006). Marine microbial diversity: Can it be determined? Trends Microbiol 14: 257-263.
-
(2006)
Trends Microbiol
, vol.14
, pp. 257-263
-
-
Pedros-Alio, C.1
-
42
-
-
33846591068
-
Dipping into the rare biosphere
-
Pedros-Alio C. (2007). Dipping into the rare biosphere. Science 315: 192-193.
-
(2007)
Science
, vol.315
, pp. 192-193
-
-
Pedros-Alio, C.1
-
43
-
-
53849104257
-
The rational exploration of microbial diversity
-
Quince C, Curtis TP, Sloan WT. (2008). The rational exploration of microbial diversity. ISME J 2: 997-1006.
-
(2008)
ISME J
, vol.2
, pp. 997-1006
-
-
Quince, C.1
Curtis, T.P.2
Sloan, W.T.3
-
44
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
Quince C, Lanzén A, Curtis TP, Davenport RJ, Hall N, Head IM et al. (2009). Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 6: 639-641.
-
(2009)
Nat Methods
, vol.6
, pp. 639-641
-
-
Quince, C.1
Lanzén, A.2
Curtis, T.P.3
Davenport, R.J.4
Hall, N.5
Head, I.M.6
-
45
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince C, Lanzén A, Davenport RJ, Turnbaugh PJ. (2011). Removing noise from pyrosequenced amplicons. BMC Bioinformatics 12: 38 : 1-18.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.38
, pp. 1-18
-
-
Quince, C.1
Lanzén, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
48
-
-
69549129476
-
The 'rare biosphere': A reality check
-
Reeder J, Knight R. (2009). The 'rare biosphere': A reality check. Nat Methods 6: 636-637.
-
(2009)
Nat Methods
, vol.6
, pp. 636-637
-
-
Reeder, J.1
Knight, R.2
-
49
-
-
0034022031
-
A geomorphic template for the analysis of lake districts applied to the Northern Highland Lake District, Wisconsin, USA
-
Riera JL, Magnuson JJ, Kratz TK, Webster KE. (2000). A geomorphic template for the analysis of lake districts applied to the Northern Highland Lake District, Wisconsin, USA. Freshwater Biol 43: 301-318.
-
(2000)
Freshwater Biol
, vol.43
, pp. 301-318
-
-
Riera, J.L.1
Magnuson, J.J.2
Kratz, T.K.3
Webster, K.E.4
-
50
-
-
0030967999
-
Analysis of soil and bacterioplankton community DNA by melting profiles and reassociation kinetics
-
Ritz K, Griffiths BS, Torsvik VL, Hendriksen NB. (1997). Analysis of soil and bacterioplankton community DNA by melting profiles and reassociation kinetics. FEMS Microbiol Lett 149: 151-156.
-
(1997)
FEMS Microbiol Lett
, vol.149
, pp. 151-156
-
-
Ritz, K.1
Griffiths, B.S.2
Torsvik, V.L.3
Hendriksen, N.B.4
-
52
-
-
35349002270
-
Microbial diversity-productivity relationships in aquatic ecosystems
-
Smith VH. (2007). Microbial diversity-productivity relationships in aquatic ecosystems. Fems Microbiol Ecol 62: 181-186.
-
(2007)
Fems Microbiol Ecol
, vol.62
, pp. 181-186
-
-
Smith, V.H.1
-
53
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR et al. (2006). Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Nat Acad Sci USA 103: 12115-12120.
-
(2006)
Proc Nat Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark Welch, D.4
Huse, S.M.5
Neal, P.R.6
-
54
-
-
0032751812
-
Spatial variation among lakes within landscapes: Ecological organization along lake chains
-
Soranno PA, Webster KE, Riera JL, Kratz TK, Baron JS, Bukaveckas PA et al. (1999). Spatial variation among lakes within landscapes: Ecological organization along lake chains. Ecosystems 2: 395-410.
-
(1999)
Ecosystems
, vol.2
, pp. 395-410
-
-
Soranno, P.A.1
Webster, K.E.2
Riera, J.L.3
Kratz, T.K.4
Baron, J.S.5
Bukaveckas, P.A.6
-
55
-
-
33745118643
-
Bacterial diversity is determined by volume in membrane bioreactors
-
van der Gast CJ, Jefferson B, Reid E, Robinson T, Bailey MJ, Judd SJ et al. (2006). Bacterial diversity is determined by volume in membrane bioreactors. Environ Microbiol 8: 1048-1055.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1048-1055
-
-
Van Der Gast, C.J.1
Jefferson, B.2
Reid, E.3
Robinson, T.4
Bailey, M.J.5
Judd, S.J.6
-
56
-
-
0033381365
-
The relationship between productivity and species richness
-
Waide RB, Willig MR, Steiner CF, Mittelbach G, Gough L, Dodson SI et al. (1999). The relationship between productivity and species richness. Ann Rev Ecol Syst 30: 257-300.
-
(1999)
Ann Rev Ecol Syst
, vol.30
, pp. 257-300
-
-
Waide, R.B.1
Willig, M.R.2
Steiner, C.F.3
Mittelbach, G.4
Gough, L.5
Dodson, S.I.6
-
57
-
-
0029844576
-
The influence of landscape position on lake chemical responses to drought in northern Wisconsin
-
Webster KE, Kratz TK, Bowser CJ, Magnuson JJ, Rose WJ. (1996). The influence of landscape position on lake chemical responses to drought in northern Wisconsin. Limnol Oceanograph 41: 977-984.
-
(1996)
Limnol Oceanograph
, vol.41
, pp. 977-984
-
-
Webster, K.E.1
Kratz, T.K.2
Bowser, C.J.3
Magnuson, J.J.4
Rose, W.J.5
-
58
-
-
33745070555
-
Taxa-Area relationships for microbes: The unsampled and the unseen
-
Woodcock S, Curtis TP, Head IM, Lunn M, Sloan WT. (2006). Taxa-Area relationships for microbes: The unsampled and the unseen. Ecol Lett 9: 805-812.
-
(2006)
Ecol Lett
, vol.9
, pp. 805-812
-
-
Woodcock, S.1
Curtis, T.P.2
Head, I.M.3
Lunn, M.4
Sloan, W.T.5
-
59
-
-
77957723630
-
Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method
-
Wu JY, Jiang XT, Jiang YX, Lu SY, Zou F, Zhou HW. (2010). Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method. BMC Microbiol 10: 255.
-
(2010)
BMC Microbiol
, vol.10
, pp. 255
-
-
Wu, J.Y.1
Jiang, X.T.2
Jiang, Y.X.3
Lu, S.Y.4
Zou, F.5
Zhou, H.W.6
-
60
-
-
12244257532
-
Geographic and environmental sources of variation in lake bacterial community composition
-
Yannarell AC, Triplett EW. (2005). Geographic and environmental sources of variation in lake bacterial community composition. App Environ Microbiol 71: 227-239.
-
(2005)
App Environ Microbiol
, vol.71
, pp. 227-239
-
-
Yannarell, A.C.1
Triplett, E.W.2
|