Controlling rice bacterial blight in Africa: Needs and prospects

Journal of Biotechnology

Volumn 159, Issue 4, 2012, Pages 320-328

  Verdier, Valérie ^a,c   Vera Cruz, Casiana ^b   Leach, Jan E ^c  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^c Veterinary Dentistry and Oral Surgery   (United States)

Author keywords

Biotechnology; Detection; Diversity; Resistance; Xanthomonas oryzae

Indexed keywords

BACTERIAL BLIGHT; BIOTECH PRODUCTS; DIVERSITY; FOOD SECURITY; GENE COMBINATIONS; HIGH COSTS; LOW COST APPLICATIONS; MARKER-ASSISTED BREEDING; PATHOGEN DIAGNOSIS; RESEARCH INSTITUTIONS; RESISTANT CULTIVARS; RICE CULTIVARS; RICE CULTIVATION; RICE PRODUCTION; STRATEGIC DEPLOYMENT; TECHNICAL SKILLS; XANTHOMONAS; YIELD LOSS;

BIOTECHNOLOGY; CULTIVATION; DIAGNOSIS; DISEASE CONTROL; ELECTRIC RESISTANCE; ERROR DETECTION; FOOD SUPPLY; GENES;

PLANTS (BOTANY);

VIRULENCE FACTOR;

AFRICA; AGRICULTURAL WORKER; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BACTERIAL BLIGHT; BACTERIAL GENE; BACTERIAL VIRULENCE; BACTERIUM IDENTIFICATION; BIOTECHNOLOGY; CLIMATE; COST; CULTIVAR; DISEASE CONTROL; DISEASE RESISTANCE; DOT HYBRIDIZATION; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENE SEQUENCE; GENETIC ANALYSIS; HUMIDITY; INFECTION CONTROL; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NUCLEOTIDE BINDING SITE; PATHOGENESIS; PLANT BREEDING; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE; VARIETAS; XANTHOMONAS; XANTHOMONAS ORYZAE;

AFRICA; AGRICULTURE; BIOTECHNOLOGY; BREEDING; DISEASE RESISTANCE; FOOD SUPPLY; ORYZA SATIVA; PLANT DISEASES; XANTHOMONAS;

BACTERIA (MICROORGANISMS); XANTHOMONAS ORYZAE;

EID: 84861331793     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2011.09.020     Document Type: Article

References (121)

1. Africa Rice Center (AfricaRice), 2010. Africa Rice Center (AfricaRice) Annual Report, 2009. Increasing Investments in Africa's rice sector. Cotonou, Benin, 68 pp. ISBN 978-92-9113-343-7.
2. Adhikari T.B., Vera Cruz C., Zhang Q., Nelso R.J., Skinner D.Z., Mew T.W., Leach J.E. Genetic Diversity of Xanthomonas oryzae pv. oryzae in Asia. Appl. Environ. Microbiol. 1995, 61:966-971.
3. Adhikari T.B., Mew T.W., Leach J.E. Genotypic and pathotypic diversity in Xanthomonas oryzae pv oryzae in Nepal. Phytopathology 1999, 89:687-694.
4. Agarcio J.S., Borines L.M., Tabanao D.A., Ordoñez S.A., Baliuag N.M., Dela Cruz A., Rico E.P., Natural M.P., Porter B.W., White F.F., Leung H., Vera Cruz C.M., Redoña E.D. Improving resistance of hybrid rice parental lines to bacterial blight. Hybrid Rice and Agroecosystem. Proc JSPS International Seminar 2007 2007, 67-74.
5. Antony G., Zhou J., Huang S., Li T., Liu B., White F., Yang B. Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3. Plant Cell 2010, 22:3864-3876.
6. Bai J., Choi S.H., Ponciano G., Leung H., Leach J.E. Xanthomonas oryzae pv. oryzae avirulence genes contribute differently and specifically to pathogen aggressiveness. Mol. Plant Microbe Interact. 2000, 13:1322-1329.
7. Basso A., Onasany A., Issaka S., Sido A.Y., Haougui A., Adam T., Séré Y., Saadou M. Le flétrissement bactérien du riz au Niger: diversité pathologique d'isolats collectés sur les périmètres irrigués. J. Appl. Biosci. 2011, 38:2551-2563.
8. Black R., Fava F., Mattei N., Robert V., Seal S., Verdier V. Case studies on the use of biotechnologies and on biosafety provisions in five African countries. J. Biotechnol. 2011, (July 6: Epub ahead of print).
9. Boch J., Scholze H., Schornack S., Landgraf A., Hahn S., Kay S., Lahaye T., Nickstadt A., Bonas U. Breaking the code of DNA binding specificity of TAL-type III effectors. Science 2009, 326:1509-1512.
10. Boch J., Bonas U. Xanthomonas AvrBs3 family-type III effectors: discovery and function. Annu. Rev. Phytopathol. 2010, 48:419-436.
11. Bogdanove A.J., Schornack S., Lahaye T. TAL effectors: finding plant genes for disease and defense. Curr. Opin. Plant Biol. 2010, 4:394-401.
12. Borines L.M., Espejo E.O., Piamonte R.T., Vera Cruz C.M., Redona E. Development of bacterial blight resistance Mestizo hybrid maintainer and restorer lines through marker-aided backcrossing. Ann. Trop. Res. 2008, 30:1-21.
13. Buddenhagen I.W., Vuong H.H., Ba D.D. Bacterial blight found in Africa. Int. Rice. Res. Newslett. 1979, 4:11.
14. Bui T.N., Vernière C., Jarne P., Brisse S., Guérin F., Boutry S., Gagnevin L., Pruvost O. From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes. Appl. Environ. Microbiol. 2009, 75:1173-1184.
15. Cahill D.J., Schmidt D.H. Use of marker assisted selection in a product development breeding program. New Directions for a Diverse Planet Proc. 4th International Crop Science Congress 2004, (Published on CD-ROM). T. Fischer, N. Turner, J. Angus, A. et (Eds.).
16. Cao Y., Ding X., Cai M., Zhao J., Lin Y., Li X., Xu C., Wang S. Expression pattern of a rice disease resistance gene Xa3/Xa26 is differentially regulated by the genetic backgrounds and developmental stages that influence its function. Genetics 2007, 177:523-533.
17. Cheema K.K., Grewal N.K., Vikal Y., Sharma R., Lore J.S., Das A., Bhatia D., Mahajan R., Gupta V., Bharaj T., Singh K. A novel bacterial blight resistance gene from Oryza nivara mapped to 38kb region on chromosome 4L and transferred to Oryza sativa L. Genet. Res. 2008, 90:397-407.
18. Chen H., Wang S., Zhang Q. New gene for bacterial blight resistance in rice located on chromosome 12 identified from minghui 63, an elite restorer line. Phytopathology 2002, 92:750-754.
19. Chen L.Q., Hou B.H., Lalonde S., Takanaga H., Hartung M.L., Qu X.Q., Guo W.J., Kim J.G., Underwood W., Chaudhuri B., Chermak D., Antony G., White F.F., Somerville S.C., Mudgett M.B., Frommer W.B. Sugar transporters for intercellular exchange and nutrition of pathogens. Nature 2010, 468:527-532.
20. Chen S., Liu X., Zeng L., Ouyang D., Yang J., Zhu X. Genetic analysis and molecular mapping of a novel recessive gene xa34(t) for resistance against Xanthomonas oryzae pv. oryzae. Theor. Appl. Genet. 2011, 122:1331-1338.
21. Christian M., Cermak T., Doyle E.L., Schmidt C., Zhang F., Hummel A., Bogdanove A.J., Voytas D.F. Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 2010, 186:757-761.
22. Chu Z.H., Fu B.Y., Yang H., Xu C.G., Li Z.K., Sanchez A., Park Y.J., Bennetzen J.L., Zhang Q.F., Wang S.P. Targeting xa13, a recessive gene for bacterial blight resistance in rice. Theor. Appl. Genet. 2006, 112:455-461.
23. Collard B.C.Y., Mackill D.J. Marker assisted selection: an approach for precision plant breeding in the twenty-first century. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2008, 363:557-572.
24. Collard B.C.Y., Vera Cruz C.M., McNally K.L., Virk P.S., Mackill D.J. Rice molecular breeding laboratories in the genomics era: current status and future considerations. Int. J. Plant Genomics 2008, 2008:524847.
25. Cottyn B., Mew T. Bacterial blight of rice. Encyclopedia of Plant and Crop Science 2004, Marcel Dekker, Inc. 10.1081/E-EPCS 120010586.
26. Djedatin G., Ndjiondjop M.N., Mathieu T., Vera Cruz C.M., Sanni A., Ghesquière A., Verdier V. Evaluation of African cultivated rice Oryza glaberrima for resistance to bacterial blight. Plant Dis. 2011, 95:441-447.
27. Gao D.Y., Xu Z.G., Chen Z.Y., Sun L.H., Sun Q.M., Lu F., Hu B.S., Liu Y.F., Tang L.H. Identification of a new gene for resistance to bacterial blight in a somaclonal mutant HX-3 (indica). Rice Genet. Newslett. 2001, 18:66.
28. Gnanamanickam S., Brindha Priyadarisini V., Narayanan N., Vasudevan P., Kavitha S. An overview of bacterial blight disease of rice and strategies for its management. Curr. Sci. 1999, 77:1435-1443.
29. Gonzalez C., Szurek B., Manceau C., Mathieu T., Sere Y., Verdier V. Molecular and pathotypic characterization of new Xanthomonas oryzae strains from West Africa. Mol. Plant Microbe 2007, 20:534-546.
30. Gu K., Tian D., Yang F., Wu L., Sreekala C., Wang D., Wang G.-L., Yin Z. High-resolution genetic mapping of Xa27 (t), a new bacterial blight resistance gene in rice, Oryza sativa L. Theor. Appl. Genet. 2004, 108:800-807.
31. Gu K.Y., Yang B., Tian D.S., Wu L.F., Wang D.J., Sreekala C., Yang F., Chu Z.Q., Wang G.L., White F.F., Yin Z.C. R gene expression induced by a type-III effectors triggers disease resistance in rice. Nature 2005, 435:1122-1125.
32. Guo S., Zhang D., Lin X. Identification and mapping of a novel bacterial blight resistance gene Xa35(t) originated from Oryza minuta. Sci. Agric. Sin. 2010, 43:2611-2618.
33. Horino O., Mew T.W., Yamada T. The effect of temperature on the development of bacterial leaf blight on rice. Ann. Phytopathol. Soc. Jpn. 1982, 48:72-75.
34. Huang N., Angeles E.R., Domingo J., Magpantay G., Singh S., Zhang G., Kumaravadivel N., Bennett J., Khush G.S. Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theor. Appl. Genet. 1997, 95:313-320.
35. Huang X., Feng Q., Qian Q., Zhao Q., Wang L., Wang A., Guan J., Fa D., Weng Q., Huang T., Dong G., Sang T., Han B. High-throughput genotyping by whole-genome resequencing. Genome Res. 2009, 19:1068-1076.
36. Iyer A.S., McCouch S.R. The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance. Mol. Plant Microbe Interact. 2004, 17:1348-1354.
37. Iyer-Pascuzzi A.S., McCouch S.R. Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem. Mol. Plant Microbe Interact. 2007, 20:731-739.
38. Jeung J.U., Heu S.G., Shin M.S., Vera Cruz C.M., Jena K.K. Dynamics of Xanthomonas oryzae pv. oryzae populations in Korea and their relationship to known bacterial blight resistance genes. Phytopathology 2006, 96:867-875.
39. Jones R.K., Barnes L.W., Gonzalez C.F., Leach J.E., Alvarez A.M., Benedict A.A. Identification of low-virulence strains of Xanthomonas campestris pv. oryzae from rice in the United States. Phytopathology 1989, 79:984-990.
40. Jones M.P., Jeutong F., Tchatchoua J. Diseases of rice in Cameroon. Int. Rice Res. Newslett. 1991, 16:19-20.
41. Kauffman H.E., Reddy A.P.K., Hsien S.P.Y., Merca S.D. An improved technique for evaluating resistance of rice varieties to Xanthomonas oryzae. Plant Dis. Rep. 1973, 57:537-541.
42. Kim J.S., Gwang J.G., Park K.H., Shim C.K. Evaluation of bacterial blight resistance using SNP and STS marker-assisted Selection in aromatic rice germplasm. Plant Pathol. J. 2009, 25:408-416.
43. Khush G.S., Angeles E.R. A new gene for resistance to race 6 of bacterial blight in rice, Oryza sativa. Rice Genet. Newslett. 1999, 16:92-93.
44. Korinsak S., Sriprakhon S., Sirithanya P., Jairin J., Korinsak S., Vanavichit A., Toojinda T. Identification of microsatellite markers (SSR) linked to a new bacterial blight resistance gene xa33(t) in rice cultivar 'Ba7' Maejo. Int. J. Sci. Technol. 2009, 3:235-247.
45. Kurata N., Yamazaki Y. Oryzabase. An integrated biological and genome information database for rice. Plant Physiol. 2006, 140:12-17. http://www.shigen.nig.ac.jp/rice/oryzabase/about/about.jsp.
46. Lang J.M., Hamilton J., Diaz M.Q., Van Sluys M., Buell C., Tisserat N., Leach J.E. Genomics based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. Plant Dis. 2010, 94:311-319.
47. Lee S.W., Choi S.H., Han S.S., Lee D.G., Lee B.Y. Distribution of Xanthomonas oryzae pv oryzae strains virulent to Xa21 in Korea. Phytopathology 1999, 89:928-933.
48. Lee K.S., Khush G.S. Genetic analysis of resistance to bacterial blight, Xanthomonas oryzae pv. oryzae rice. Rice Genet. Newslett. 2000, 17:72.
49. Lee K.S., Angeles E.R., Khush G.S. Inheritance of resistance to race 6 of bacterial blight in rice. Rice Genet. Newslett. 2000, 17:73.
50. Lee K.S., Rasabandith S., Angeles E.R., Khush G.S. Inheritance of resistance to bacterial blight in 21 cultivars of rice. Phytopathology 2003, 93:147-152.
51. Lee B.M., Park Y.J., Park D.S., Kang H.W., Kim J.G., Song E.S., Park I.C., Yoon U.H., Hahn J.H., Koo B.S., Lee G.B., Kim H., Park H.S., Yoon K.O., Kim J.H., Jung C.H., Koh N.H., Seo J.S., Go S.J. The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. Nucleic Acids Res. 2005, 33:577-586.
52. Leung H., Wu J., Liu B., Bustaman M., Sridhar R., Singh K., Redona E.D., Quang V.D., Zheng K., Bernardo M., Wang G., Leach J., Choi I.R., Vera Cruz C.M. Sustainable disease resistance in rice: current and future strategies. Proc. 4th International Crop Science Congress 2004, (Published on CD-ROM). T. Fischer, N. Turner, J. Angus (Eds.).
53. Liu H.X., Liu F.Q., Hu B.S., Yang W.F., Chen Z.Y., Xu Z.G. Virulence of Xanthomonas oryzae pv oryzae on rice near-isogenic lines with single resistance gene and pyramiding lines in China. Agric. Sci. China 2004, 3:764-769. (in Chinese).
54. Liu Q., Yuan M., Zhou Y., Li X.G., Xiao J., Wang S. A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice. Plant Cell Environ. 2011, (Published online: 5 July). 10.1111/j.1365-3040.2011.02391.x.
55. Lore J.S., Vikal Y., Hunjan M.S., Goel R.K., Bharaj T.S., Raina G.L. Genotypic and pathotypic diversity of Xanthomonas oryzae pv. oryzae, the cause of bacterial blight of rice in Punjab State of India. J. Phytopathol. 2011, (article first published online 3 February). 10.1111/j.1439-0434.2011.01789.
56. Manser P.D. Rice pests in the Gabon. Int. Rice Commun. Newslett. 1984, 33:43-47.
57. Mew T.W., Vera Cruz C.M. Variability of Xanthomonas oryzae: specificity in infection of rice differentials. Phytopathology 1979, 69:152-155.
58. Mew T.W. Current status and future prospects of research on bacterial blight of rice. Annu. Rev. Phytopathol. 1987, 25:359-382.
59. Mew T.W., Vera Cruz C.M., Medalla E.S. Changes in race frequency of Xanthomonas oryzae pv. oryzae in response to rice cultivars planted in the Philippines. Plant Dis. 1992, 76:1029-1032.
60. Mew T.W., Alvarez A.M., Leach J.E., Swings J. Focus on bacterial blight of rice. Plant Dis. 1993, 77:5-12.
61. Miao L., Wang C., Zheng C., Che J., Gao Y., Wen Y., Li G., Zhao K. Molecular mapping of a new gene for resistance to rice bacterial blight. Sci. Agric. Sin. 2010, 43:3051-3058.
62. Morbitzer R., Römer P., Boch J., Lahaye T. Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:21617-21622.
63. Moscou M.J., Bogdanove A.J. A simple cipher governs DNA recognition by TAL effectors. Science 2009, 326:1501.
64. Müller C., Cramer W., Hare W.L., Lotze-Campen H. Climate change risks for African agriculture. Proc. Natl. Acad. Sci. U.S.A. 2011, 108:4313-4315.
65. Nelson R.J., Baraoidan M.R., Vera Cruz C.M, Yap I.V., Leach J.E., Mew T.W., Leung H. Relationship between phylogeny and pathotypes for the bacterial blight pathogen of rice. Appl. Environ. Microbiol. 1994, 60:3275-3283.
66. Nino-Liu D.O., Ronald P.C., Bogdanove A.J. Xanthomonas oryzae pathovars: model pathogens of a model crop. Mol. Plant Pathol. 2006, 7:303-324.
67. Noda T., Li C., Li J., Ochiai H., Ise K., Kaku H. Pathogenic diversity of Xanthomonas oryzae pv. oryzae strains from Yunnan province, China. Jpn. Agric. Res. Q. 2001, 35:97-103.
68. Noda T., Yamamoto T., Kaku H., Horino O. Geographical distribution of pathogenic races of Xanthomonas oryzae pv oryzae in Japan in 1991 and 1993. Ann. Phytopathol. Soc. Jpn. 1996, 62:549-553.
69. Ochiai H., Horino O., Miyajima K., Kaku H. Genetic diversity of Xanthomonas oryzae pv oryzae strains from Sri Lanka. Phytopathology 2000, 90:415-421.
70. Ochiai H., Inoue Y., Takeya M., Sasaki A., Kaku H. Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity. Jpn. Agric. Res. 2005, 39:275-287.
71. Ogawa T. Gene symbols for resistance to bacterial leaf blight. Rice Genet. Newslett. 1987, 4.
72. Ogawa T. Methods and strategy for monitoring race distribution and identification of resistance genes to bacterial leaf blight (Xanthomonas campestris pv. oryzae) in rice. Jpn. Agric. Res. 1993, 27:71-80.
73. Ogawa T., Yamamoto T., Khush G.S., Mew T.W., Kaku H. Near-isogenic lines as international differentials for resistance to bacterial blight of rice. Rice Genet. Newslett. 1988, 5:106-109.
74. Ogawa T., Yamamoto K., Khush G., Mew T. Breeding of near-isogenic lines of rice with single genes for resistance to bacterial blight pathogen (Xanthomonas campestris pv. oryzae). Jpn. J. Breed. 1991, 41:523-529.
75. Perez L.M., Redona E.D., Mendioro M.S., Vera Cruz C.M., Leung H. Introgression of Xa4, Xa7 and Xa21 for resistance to bacterial blight in thermosensitive genetic male sterile rice (Oryza sativa L.) for the development of two-line hybrids. Euphytica 2008, 10.1007/s10681-008-9653-1.
76. Porter B.W., Chittoor J.M., Yano M., Sasaki T., White F.F. Development and mapping of markers linked to the rice bacterial leaf blight resistance gene Xa7. Crop Sci. 2003, 43:1484-1492.
77. Priyadarisini V., Gnanamanickam S.S. Occurrence of a subpopulation of Xanthomonas oryzae pv. oryzae with virulence to rice Cv IRBB21 (Xa21) in Southern India. Plant Dis. 1999, 8:781.
78. Pruvost O., Vernière C., Vital K., Guerin F., Jouen E., Chiroleu F., Ah-You N., Gagnevin L. Insertion sequence- and tandem repeat-based genotyping techniques for Xanthomonas citri pv. mangiferaeindicae. Phytopathology 2011, (February 15: Epub ahead of print).
79. Reckhaus P.M. Occurrence of bacterial blight of rice in Niger, West Africa. Plant Dis. 1983, 67:1039.
80. Romer P., Recht S., Strauss T., Elsaesser J., Schornack S., Boch J., Wang S., Lahaye T. Promoter elements of rice susceptibility genes are bound and activated by specific TAL effectors from the bacterial blight pathogen, Xanthomonas oryzae pv oryzae. New Phytol. 2010, 187:1048-1057.
81. Ronald P.C., Albano B., Tabien R., Abenes L., Wu K.S., McCouch S., Tanksley S.D. Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21. Mol. Gen. Genet. 1992, 236:113-120.
82. Ryan R.P., Vorhölter F.J., Potnis N., Jones J.B., Van Sluys M.A., Bogdanove A.J., Dow J.M. Pathogenomics of Xanthomonas: understanding bacterium-plant interactions. Nat. Rev. Microbiol. 2011, 9:344-355.
83. Ryba-White M., Notteghem J.L., Leach J.E. Comparison of Xanthomonas oryzae pv oryzae strains from Africa, North America, and Asia by restriction fragment length polymorphism analysis. Int. Rice Res. Notes 1995, 20:25-26.
84. Sakaguchi S. Linkage studies on the resistance to bacterial leaf blight Xanthomonas oryzae (Uyeda et Ishiyama) DOWSON, in rice. Bull. Natl. Inst. Agric. Sci. Ser. 1967, D16:1-18. (in Japanese with English summary).
85. Salzberg S., Sommer D., Schatz M., Phillippy A., Rabinowicz P., Tsuge S., Furutani A., Ochiai H., Delcher A., Kelley D., Madupu R., Puiu D., Radune D., Shumway M., Trapnell C., Aparna G., Jha G., Pandey A., Patil P., Ishihara H., Meyer D., Szurek B., Verdier V., Koebnik R., Dow J.M., Ryan R., Hirata H., Tsuyumu S., Won Lee S., Ronald P., Sonti R., Van Sluys M.A., Leach J., White F., Bogdanove A. Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics 2008, 9:204.
86. Scholze H., Boch J. TAL effectors are remote controls for gene activation. Curr. Opin. Microbiol. 2011, 14:47-53.
87. Sere Y., Onasanya A., Verdier V., Akator K., Ouedraogo L.S., Segda Z., Mbare M.M., Sido A.Y., Baso.A. Rice bacterial leaf blight in West Africa: preliminary studies on disease in farmer's field and screening. Asian J. Plant Sci. 2005, 4:577-579.
88. Shirasawa K., Kishitani S., Nishio T. Dot-blot analysis for identification of japonica rice cultivars and genotyping of recombinant inbred lines. Breeding Sci. 2005, 55:187-192.
89. Shirasawa K., Shiokai S., Yamaguchi M., Kishitani S., Nishio T. Dot-blot-SNP analysis for practical plant breeding and cultivar identification in rice. Theor. Appl. Genet. 2006, 113:147-155.
90. Sidhu G.S., Khush G.S., Mew T.W. Genetic analysis of bacterial blight resistance in seventy-four cultivars of rice, Oryza sativa L. Theor. Appl. Genet. 1978, 53:105-111.
91. Singh R.J., Khush G.S., Mew T.W. A new gene for resistance to bacterial blight in rice. Crop Sci. 1983, 23:558-560.
92. Singh S., Sidhu J.S., Huang N., Vikal Y., Li Z., Brar D.S., Dhaliwal H.S., Khush G.S. Pyramiding three bacterial blight resistance genes (xa5, xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR 106. Theor. Appl. Genet. 2001, 102:1011-1015.
93. Song W.Y., Wang G.L., Chen L.L., Kim H.S., Pi L.Y., Holsten T., Gardner J., Wang B., Zhai W.X., Zhu L.H., Fauquet C., Ronald P. A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 1995, 270:1804-1806.
94. Soto-Suarez M., Gonzalez C., Piegu B., Tohme J., Verdier V. Genomic comparison between Xanthomonas oryzae pv oryzae and Xanthomonas oryzae pv. oryzicola, using suppression-subtractive hybridization. FEMS Microbiol. Lett. 2010, 308:16-23.
95. Sun X., Cao Y., Yang Z., Xu C., Li X., Wang S., Zhang Q. Xa26, a gene conferring resistance to Xanthomonas oryzae pv oryzae in rice, encodes an LRR receptor kinase-like protein. Plant J. 2004, 37:517-527.
96. Sundaram R.M., Vishnupriya M.R., Biradar S.K., Laha G.S., Shobharani N., Sarma M.P., Sonti R.V. Marker assisted introgression of bacterial blight resistance in Sambha Mahsuri, an elite indica rice variety. Euphytica 2008, 160:411-422.
97. Sundaram R.M., Vishnupriya M.R., Laha G.S., Rani N.S., Rao P.S., Balachandran S.M., Reddy G.A., Sarma N.P., Sonti R.V. Introduction of bacterial blight resistance into Triguna, a high yielding, mid-early duration rice variety. Biotechnol. J. 2009, 4:400-407.
98. Tan G.X., Ren X., Weng Q.M., Shi Z.Y., Zhu L.L., He G.C. Mapping of a new resistance gene to bacterial blight in rice line introgressed from Oryza officinalis. Yi Chuan Xue Bao 2004, 31:724-729. (in Chinese).
99. Traoré O., Pinel-Galzi A., Sorho F., Sarra S., Rakotomalala M., Sangu E., Kanyeka Z., Séré Y., Konaté G., Fargette D. A reassessment of the epidemiology of Rice yellow mottle virus following recent advances in field and molecular studies. Virus Res. 2009, 141:258-267.
100. Trinh T.T. New rice diseases and insects in the Senegal River Basin in 1978/79. Int. Rice. Commun. Newslett. 1980, 29:37.
101. Triplett L.R., Hamilton J.P., Buell C.R., Tisserat N.A., Verdier V., Zink F., Leach J.E. Genomic analysis of Xanthomonas oryzae from US rice reveals substantial divergence from known X. oryzae pathovars. Appl. Environ. Microbiol. 2011, 77:3930-3937.
102. Vera Cruz C.M., Bai J.F., Ona I., Leung H., Nelson R.J., Mew T.W., Leach J.E. Predicting durability of a disease resistance gene based on an assessment of the fitness loss and epidemiological consequences of avirulence gene mutation. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:13500-13505.
103. Vera Cruz C.M., Jena K.K., Ryong I.C., Brar D.S., Leung H. Marker-assisted selection for biotic stress tolerance in rice: current status and emerging needs. Proc. International Symposium on Rice Research in the Era of Global Warming 2009.
104. Verdier V., Triplett L.R., Corral R., Leach J.E. Genome-enabled primer design to distinguish geographic origin of Xanthomonas oryzae pvs. oryzicola and oryzae. Phytopathology 2011, 101:S183.
105. Wang G.L., Song W.Y., Ruan D.L., Sideris S., Ronald P.C. The cloned gene, Xa21, confers resistance to multiple Xanthomonas oryzae pv. oryzae isolates in transgenic plants. Mol. Plant Microbe Interact. 1996, 9:850-855.
106. Wang W., Zhai W., Luo M., Jiang G., Chen X., Li X., Wing R.A., Zhu L. Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library. Mol. Genet. Genomics 2001, 265:118-125.
107. Wang C., Wen G., Lin X., Liu X., Zhang D. Identification and fine mapping of a new bacterial blight resistance gene, Xa31(t) in rice. Eur. J. Plant Pathol. 2009, 123:235-240.
108. Webb K.M., Oña I., Bai J., Garrett K.A., Mew T., Vera Cruz C.M., Leach J.E. A benefit of high temperature: increased effectiveness of a rice bacterial blight disease resistance gene. New Phytol. 2010, 185:568-576.
109. White F.F., Yang B. Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction. Plant Physiol. 2009, 150:1677-1686.
110. White F.F., Potnis N., Jones J.B., Koebnik R. The type III effectors of Xanthomonas. Mol. Plant Pathol. 2009, 10:749-766.
111. Wonni I., Ouedraogo L., Verdier V. First report of bacterial leaf streak caused by Xanthomonas oryzae pv oryzicola on Rice in Burkina Faso. Plant Dis. 2011, 1:72.
112. Yang B., Sugio A., White F.F. Os8N3 is a host disease-susceptibility gene for bacterial blight of rice. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:10503-10508.
113. Yashitola J., Krishnaveni D., Reddy A.P.K., Sonti R.V. Genetic Diversity within the Population of Xanthomonas oryzae pv oryzae in India. Phytopathology 1997, 7:760-765.
114. Yoshimura A., Mew T.W., Khush G.S., Omura T. Inheritance of resistance to bacterial blight in rice cultivar Cas 209. Phytopathology 1983, 73:1409-1412.
115. Yoshimura S., Yamanouchi U., Katayose Y., Toki S., Wang Z.X., Kono I., Kurata N., Yano M., Iwata N., Sasaki T. Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:1663-1668.
116. Yu Y., Streubel J., Balzergue S., Champion A., Boch J., Koebnik R., Feng J., Verdier V., Szurek B. Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector which induces the rice nodulin-3 Os11N3 gene. Mol. Plant Microbe Interact. 2011, (June 16: Epub ahead of print).
117. Zeigler R.S., Savary S. Plant Diseases and the World's Dependence on Rice. The Role of Plant Pathology in Food Safety and Food Security, Plant Pathology in the 21st Century 2010, Springer, Dordrecht, pp. 3-9.
118. Zhang Q., Lin S.C., Zhao B.Y., Wang C.L., Yang W.C., Zhou Y.L., Li D.Y., Chen C.B., Zhu L.H. Identification and tagging a new gene for resistance to bacterial blight (Xanthomonas oryzae pv. oryzae) from O. rufipogon. Rice Genet. Newslett. 1998, 15:138-142.
119. Zhang Q., Wang C.L., Zhao K.J., Zhao Y.L., Caslana V.C., Zhu X.D., Li D.Y., Jiang Q.X. The effectiveness of advanced rice lines with new resistance gene Xa23 to rice bacterial blight. Rice Genet. Newslett. 2001, 18:71.
120. Zhao J., Fu J., Li X., Xu C., Wang S. Dissection of the factors affecting development-controlled and race-specific disease resistance conferred by leucine-rich repeat receptor kinase-type R genes in rice. Theor. Appl. Genet. 2009, 119:231-239.
121. Zheng C.K., Wang C.L., Yu Y.J., Liang Y.T., Zhao K.J. Identification and molecular mapping of Xa32(t), a novel resistance gene for bacterial blight (Xanthomonas oryzae pv. oryzae) in rice. Acta Agron. Sin. 2009, 35:1173-1180.