메뉴 건너뛰기




Volumn 78, Issue 7, 2012, Pages 2328-2336

Significant role for microbial autotrophy in the sequestration of soil carbon

Author keywords

[No Author keywords available]

Indexed keywords

AUTOTROPHY; AZOSPIRILLUM; BRADYRHIZOBIUM JAPONICUM; C CYCLING; C SEQUESTRATION; CLONE LIBRARY; GENE DIVERSITY; MICROBIAL BIOMASS; MICROBIAL COMMUNITIES; MULTI VARIATE ANALYSIS; PHYLOGENETIC ANALYSIS; QUANTITATIVE PCR; RALSTONIA EUTROPHA; RHODOPSEUDOMONAS PALUSTRIS; RIBULOSE 1 ,5-BISPHOSPHATE CARBOXYLASE; RUBISCO; RUBISCO ACTIVITY; SOIL CARBON; SOIL ORGANIC CARBON; SYNTHESIS RATE; TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISMS;

EID: 84861157356     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.06881-11     Document Type: Article
Times cited : (204)

References (44)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389- 3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 0001501470 scopus 로고
    • CO metabolism by a thermophilic actinomycete Streptomyces strain G26
    • Bell JM, Falconer C, Colby J, Williams E. 1987. CO metabolism by a thermophilic actinomycete, Streptomyces strain G26. J. Gen. Microbiol. 133:3445-3456.
    • (1987) J. Gen. Microbiol. , vol.133 , pp. 3445-3456
    • Bell, J.M.1    Falconer, C.2    Colby, J.3    Williams, E.4
  • 5
    • 78149470564 scopus 로고    scopus 로고
    • Impact of long-term fertilization on the composition of denitrifier communities based on nitrite reductase analysis in a paddy soil
    • Chen Z, et al. 2010. Impact of long-term fertilization on the composition of denitrifier communities based on nitrite reductase analysis in a paddy soil. Microb. Ecol. 60:850-861.
    • (2010) Microb. Ecol. , vol.60 , pp. 850-861
    • Chen, Z.1
  • 6
    • 0034644605 scopus 로고    scopus 로고
    • The global carbon cycle: a test of our knowledge of earth as a system
    • Falkowski P, et al. 2000. The global carbon cycle: a test of our knowledge of earth as a system. Science 290:291-296.
    • (2000) Science , vol.290 , pp. 291-296
    • Falkowski, P.1
  • 7
    • 76449087604 scopus 로고    scopus 로고
    • Earthworms, soil fertility and aggregateassociated soil organic matter dynamics in the Quesungual agroforestry system
    • Fonte SJ, Barrios E, Six J. 2010. Earthworms, soil fertility and aggregateassociated soil organic matter dynamics in the Quesungual agroforestry system. Geoderma 155:320 -328.
    • (2010) Geoderma , vol.155 , pp. 320-328
    • Fonte, S.J.1    Barrios, E.2    Six, J.3
  • 8
    • 0002935549 scopus 로고
    • 2 fixation
    • Schlegel HG, Bowien B (ed). Springer-Verlag KG, Berlin, Germany
    • 2 fixation, p 365- 382. In Schlegel HG, Bowien B (ed), Autotrophic bacteria. Springer-Verlag KG, Berlin, Germany.
    • (1989) Autotrophic bacteria , pp. 365-382
    • Fuchs, G.1
  • 9
    • 78650418298 scopus 로고    scopus 로고
    • Chemical properties, microbial biomass, and activity differ between soils of organic and conventional horticultural systems under greenhouse and open field management: a case study
    • Ge T, et al. 2011. Chemical properties, microbial biomass, and activity differ between soils of organic and conventional horticultural systems under greenhouse and open field management: a case study. J. Soils Sediment. 11:25-36.
    • (2011) J. Soils Sediment. , vol.11 , pp. 25-36
    • Ge, T.1
  • 10
    • 0035836695 scopus 로고    scopus 로고
    • A ribulose-1 5-bisphosphate carboxylase/ oxygenase (RubisCO)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress
    • Hanson TE, Tabita FR. 2001. A ribulose-1,5-bisphosphate carboxylase/ oxygenase (RubisCO)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress. Proc. Natl. Acad. Sci. U. S. A. 98:4397- 4402.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 4397-4402
    • Hanson, T.E.1    Tabita, F.R.2
  • 11
    • 34249728890 scopus 로고    scopus 로고
    • Nutrient quality drives differential phytoplankton community composition on the southwest Florida shelf
    • Heil CA, Revilla M, Glibert PM, Murasko S. 2007. Nutrient quality drives differential phytoplankton community composition on the southwest Florida shelf. Limnol. Oceanogr. 52:1067-1078.
    • (2007) Limnol. Oceanogr. , vol.52 , pp. 1067-1078
    • Heil, C.A.1    Revilla, M.2    Glibert, P.M.3    Murasko, S.4
  • 12
  • 13
    • 77955171451 scopus 로고    scopus 로고
    • Taxon-specific responses of soil bacteria to the addition of low level C inputs
    • Jenkins SN, et al. 2010. Taxon-specific responses of soil bacteria to the addition of low level C inputs. Soil Biol. Biochem. 42:1624 -1631.
    • (2010) Soil Biol. Biochem. , vol.42 , pp. 1624-1631
    • Jenkins, S.N.1
  • 14
    • 40749121586 scopus 로고    scopus 로고
    • Net ecosystem production in the Great Lakes basin and its implications for the North American missing carbon sink: a hydrologic and stable isotope approach
    • Karim A, Veizer J, Barth J. 2008. Net ecosystem production in the Great Lakes basin and its implications for the North American missing carbon sink: a hydrologic and stable isotope approach. Global Planet. Change 61:15-27.
    • (2008) Global Planet. Change , vol.61 , pp. 15-27
    • Karim, A.1    Veizer, J.2    Barth, J.3
  • 15
    • 0030946680 scopus 로고    scopus 로고
    • The structure and function of RuBisCO and their implications for systematic studies
    • Kellogg EA, Juliano ND. 1997. The structure and function of RuBisCO and their implications for systematic studies. Am. J. Bot. 84:413- 428.
    • (1997) Am. J. Bot. , vol.84 , pp. 413-428
    • Kellogg, E.A.1    Juliano, N.D.2
  • 16
    • 0030724104 scopus 로고    scopus 로고
    • 2 assimilation genes in autotrophic bacteria
    • 2 assimilation genes in autotrophic bacteria. FEMS Microbiol. Rev. 21:135- 155.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 135-155
    • Kusian, B.1    Bowien, B.2
  • 17
    • 40949157915 scopus 로고    scopus 로고
    • Carbon sequestration
    • Lal R. 2008. Carbon sequestration. Philos. Trans. R. Soc. B. 363:815- 830.
    • (2008) Philos. Trans. R. Soc. B. , vol.363 , pp. 815-830
    • Lal, R.1
  • 19
    • 0034119122 scopus 로고    scopus 로고
    • Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure with in an agricultural soil planted with transgenic and non-transgenic potato plants
    • Lukow T, Dunfield PF, Liesack W. 2000. Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure with in an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiol. Ecol. 32:241-247.
    • (2000) FEMS Microbiol. Ecol. , vol.32 , pp. 241-247
    • Lukow, T.1    Dunfield, P.F.2    Liesack, W.3
  • 20
    • 0033057627 scopus 로고    scopus 로고
    • Presence of acetyl coenzyme A (CoA) carboxylase and propionyl-CoA carboxylase in autotrophic Crenarchaeota and indication for operation of a 3-hydroxypropionate cycle in autotrophic carbon fixation
    • Menendez C, et al. 1999. Presence of acetyl coenzyme A (CoA) carboxylase and propionyl-CoA carboxylase in autotrophic Crenarchaeota and indication for operation of a 3-hydroxypropionate cycle in autotrophic carbon fixation. J. Bacteriol. 181:1088 -1098.
    • (1999) J. Bacteriol. , vol.181 , pp. 1088-1098
    • Menendez, C.1
  • 21
    • 34548092850 scopus 로고    scopus 로고
    • ProbeLibrary: a new method for faster design and execution of quantitative real-time PCR
    • Mouritzen P, et al. 2005. ProbeLibrary: a new method for faster design and execution of quantitative real-time PCR. Nat. Methods 2:313-316.
    • (2005) Nat. Methods , vol.2 , pp. 313-316
    • Mouritzen, P.1
  • 22
    • 2442501485 scopus 로고    scopus 로고
    • Soil organic matter turnover as a function of the soil clay content: consequences for model applications
    • Müller T, Höper H. 2004. Soil organic matter turnover as a function of the soil clay content: consequences for model applications. Soil Biol. Biochem. 36:877- 888.
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 877-888
    • Müller, T.1    Höper, H.2
  • 23
    • 2942608404 scopus 로고    scopus 로고
    • Analysis of facultative lithotrophic distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1 5-bisphosphate carboxylase/oxygenase
    • Nanba K, King GM, Dunfield K. 2004. Analysis of facultative lithotrophic distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase. Appl. Environ. Microbiol. 70:2245-2253.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2245-2253
    • Nanba, K.1    King, G.M.2    Dunfield, K.3
  • 27
    • 0034608549 scopus 로고    scopus 로고
    • Micro- and macrodiversity in rbcL sequences in ambient phytoplankton populations from the southeastern Gulf of Mexico
    • Paul J, Alfreider A, Wawrik B. 2000. Micro- and macrodiversity in rbcL sequences in ambient phytoplankton populations from the southeastern Gulf of Mexico. Mar. Ecol. Prog. Ser. 198:9 -18.
    • (2000) Mar. Ecol. Prog. Ser. , vol.198 , pp. 9-18
    • Paul, J.1    Alfreider, A.2    Wawrik, B.3
  • 28
    • 0000692494 scopus 로고
    • Cation exchangeable capacity
    • Pace AL, Miller RH, Keeney DR (ed), 2nd ed., American Society of Agronomy, Inc. Soil Science Society of America, Inc., Madison, WI
    • Rhoades JD. 1982. Cation exchangeable capacity, p 149-165. In Pace AL, Miller RH, Keeney DR (ed), Methods of soil analysis, part 2: chemical and microbiological properties, 2nd ed. American Society of Agronomy, Inc., and Soil Science Society of America, Inc., Madison, WI.
    • (1982) Methods of soil analysis, part 2: chemical and microbiological properties
    • Rhoades, J.D.1
  • 30
    • 68949150767 scopus 로고    scopus 로고
    • Substrate utilization patterns of desert soil microbial communities in response to xeric and mesic conditions
    • Saul-Tcherkas V, Steinberger Y. 2009. Substrate utilization patterns of desert soil microbial communities in response to xeric and mesic conditions. Soil Biol. Biochem. 41:1882-1893.
    • (2009) Soil Biol. Biochem. , vol.41 , pp. 1882-1893
    • Saul-Tcherkas, V.1    Steinberger, Y.2
  • 31
    • 77749264485 scopus 로고    scopus 로고
    • Spatially ordered dynamics of the bacterial carbon fixation machinery
    • Savage DF, Afonso B, Chen AH, Silver PA. 2010. Spatially ordered dynamics of the bacterial carbon fixation machinery. Science 327:1258- 1261.
    • (2010) Science , vol.327 , pp. 1258-1261
    • Savage, D.F.1    Afonso, B.2    Chen, A.H.3    Silver, P.A.4
  • 32
    • 12244285672 scopus 로고    scopus 로고
    • Diversity of green-like and red-like ribulose-1 5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils
    • Selesi D, Schmid M, Hartmann A. 2005. Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils. Appl. Environ. Microbiol. 71:175-184.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 175-184
    • Selesi, D.1    Schmid, M.2    Hartmann, A.3
  • 33
    • 34247627937 scopus 로고    scopus 로고
    • Quantification of bacterial RubisCO genes in soils by cbbL targeted real-time PCR
    • Selesi D, Pattis I, Schmid M, Kandeler E, Hartmann A. 2007. Quantification of bacterial RubisCO genes in soils by cbbL targeted real-time PCR. J. Microbiol. Methods 69:497-503.
    • (2007) J. Microbiol. Methods , vol.69 , pp. 497-503
    • Selesi, D.1    Pattis, I.2    Schmid, M.3    Kandeler, E.4    Hartmann, A.5
  • 34
    • 0027789898 scopus 로고
    • Atmospheric carbon dioxide and the ocean
    • Siegenthaler U, Sarmiento JL. 1993. Atmospheric carbon dioxide and the ocean. Nature 365:119 -125.
    • (1993) Nature , vol.365 , pp. 119-125
    • Siegenthaler, U.1    Sarmiento, J.L.2
  • 35
    • 0032840522 scopus 로고    scopus 로고
    • Microbial ribulose-1 5-bisphosphate carboxylase/ oxygenase: a different perspective
    • Tabita FR. 1999. Microbial ribulose-1,5-bisphosphate carboxylase/ oxygenase: a different perspective. Photosynth. Rev. 60:1-28.
    • (1999) Photosynth. Rev. , vol.60 , pp. 1-28
    • Tabita, F.R.1
  • 36
    • 32044458392 scopus 로고    scopus 로고
    • Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of Epsilonproteobacteria
    • Takai K, et al. 2005. Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of Epsilonproteobacteria. Appl. Environ. Microbiol. 71: 7310-7320.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7310-7320
    • Takai, K.1
  • 37
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0.
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596 -1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 38
    • 33646583168 scopus 로고    scopus 로고
    • Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized
    • Tcherkez GGB, Farquhar GD, Andrews TJ. 2006. Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized. Proc. Natl. Acad. Sci. U. S. A. 103: 7246-7251.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 7246-7251
    • Tcherkez, G.G.B.1    Farquhar, G.D.2    Andrews, T.J.3
  • 40
    • 29144519908 scopus 로고    scopus 로고
    • Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils
    • Tolli J, King GM. 2005. Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils. Appl. Environ. Microbiol. 71:8411- 8418.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8411-8418
    • Tolli, J.1    King, G.M.2
  • 41
    • 0023509576 scopus 로고
    • Microbial biomass measurements in forest soils: determination of kc values and tests of hypotheses to explain the failure of the chloroform fumigation-incubation method in acid soils
    • Vance ED, Brookes PC, Jenkinson DS. 1987. Microbial biomass measurements in forest soils: determination of kc values and tests of hypotheses to explain the failure of the chloroform fumigation-incubation method in acid soils. Soil Biol. Biochem. 19:689-696.
    • (1987) Soil Biol. Biochem. , vol.19 , pp. 689-696
    • Vance, E.D.1    Brookes, P.C.2    Jenkinson, D.S.3
  • 42
    • 78751472583 scopus 로고    scopus 로고
    • Carbon accumulation in paddy ecosystems in sub-tropical China: evidence from landscape studies
    • Wu J. 2011. Carbon accumulation in paddy ecosystems in sub-tropical China: evidence from landscape studies. Eur. J. Soil Sci. 62:29 -34.
    • (2011) Eur. J. Soil Sci. , vol.62 , pp. 29-34
    • Wu, J.1
  • 43
    • 0030925054 scopus 로고    scopus 로고
    • Procedure for the simultaneous analysis of total and radioactive carbon in soil and plant materials
    • Wu J, O'Donnell AG. 1997. Procedure for the simultaneous analysis of total and radioactive carbon in soil and plant materials. Soil Biol. Biochem. 29:199 -202.
    • (1997) Soil Biol. Biochem. , vol.29 , pp. 199-202
    • Wu, J.1    O'Donnell, A.G.2
  • 44
    • 0028850433 scopus 로고
    • Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov
    • Yabuuchi E, Kosako Y, Yano I, Hotta H, Nishiuchi Y. 1995. Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov. Microbiol. Immunol. 39:897-904.
    • (1995) Microbiol. Immunol , vol.39 , pp. 897-904
    • Yabuuchi, E.1    Kosako, Y.2    Yano, I.3    Hotta, H.4    Nishiuchi, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.