Presence of acetyl coenzyme A (CoA) carboxylase and propionyl-CoA carboxylase in autotrophic crenarchaeota and indication for operation of a 3- hydroxypropionate cycle in autotrophic carbon fixation

Journal of Bacteriology

Volumn 181, Issue 4, 1999, Pages 1088-1098

  Menendez, Castor ^a   Bauer, Zsuzsa ^a   Huber, Harald ^b   Gad'On, Nasser ^a   Stetter, Karl Otto ^b   Fuchs, Georg ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

^b UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A CARBOXYLASE; ADENOSINE TRIPHOSPHATE MAGNESIUM; CARBON DIOXIDE; HYDRACRYLIC ACID; MALONYL COENZYME A; PHOSPHOENOLPYRUVATE CARBOXYLASE; PROPIONYL COENZYME A; PROPIONYL COENZYME A CARBOXYLASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; SUCCINIC ACID;

ARTICLE; CARBON DIOXIDE FIXATION; CARBOXYLATION; CITRIC ACID CYCLE; CRENARCHAEOTA; DNA SEQUENCE; ENZYME ACTIVATION; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME LOCALIZATION; GROWTH RATE; NONHUMAN; PENTOSE PHOSPHATE CYCLE; PHOTOTROPHIC BACTERIUM; PRIORITY JOURNAL;

CHLOROFLEXUS AURANTIACUS; METALLOSPHAERA SEDULA;

EID: 0033057627     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.4.1088-1098.1999     Document Type: Article

References (47)

1. Antranikian, G., C. Herzberg, and G. Gottschalk. 1982. Characterization of ATP citrate lyase from Chlorobium limicola. J. Bacteriol. 152:1284-1287.
2. Beh, M., G. Strauß, R. Huber, K. O. Stetter, and G. Fuchs. 1993. Enzymes of the reductive citric acid cycle in the autotrophic eubacterium Aquifex pyrophilus and in the archaebacterium Thermoproteus neutrophilus. Arch. Microbiol. 160:306-311.
3. Cánovas, J. L., and H. L. Kornberg. 1969. Phosphoenolpyruvate carboxylase from Escherichia coli. Methods Enzymol. XIII:288-292.
4. Daniels, L., G. Fuchs, R. K. Thauer, and G. Zeikus. 1977. Carbon monooxide oxidation by methanogenic bacteria. J. Bacteriol. 132:118-126.
5. Eisenreich, W., G. Strauss, U. Werz, G. Fuchs, and A. Bacher. 1993. Retrobiosynthesis analysis of carbon fixation in the phototrophic eubacterium Chloroflexus aurantiacus. Eur. J. Biochem. 215:619-632.
6. Evans, M. C. W., B. B. Buchanan, and D. I. Arnon. 1966. A new ferrodoxin-dependent carbon reduction cycle in a photosynthetic bacterium. Proc. Natl. Acad. Sci. USA 55:928-934.
7. Friedrich, C. G., G. Bowien, and B. Friedrich. 1979. Formate and oxalate metabolism in Alcaligenes eutrophus. J. Gen. Microbiol. 115:185-192.
8. 2 fixation, p. 365-382. In H. G. Schlegel and B. Bowien (ed.), Autotrophic bacteria. Springer-Verlag, Berlin, Germany.
9. 2 fixation in Chlorobium limicola. Evidence for the operation of a reductive tricarboxylic acid cycle in growing cells. Arch. Microbiol. 128:64-71.
10. Gallagher, S., S. E. Winston, S. A. Fuller, and J. G. R. Hurrell. 1997. Immunoblotting and immunodetection, p. 10.8.1-10.8.21. In F, M. Ausubel et al. (ed.), Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N.Y.
11. Gross, G. G., and M. H. Zenk. 1966. Darstellung und Eigenschaften von Coenzym A-Thioestern substituierter Zimtsäuren. Z. Naturforsch. 21b:683-690.
12. 2 and acetate. Arch. Microbiol. 151:252-256.
13. 2 fixation in Chloroflexus aurantiacus. Arch. Microbiol. 145:173-180.
14. Huber, G., and K. O. Stetter. 1991. Sulfolobus metallicus, sp. nov., a novel strictly chemolithoautotrophic thermophilic archaeal species of metal-mobilizers. Syst. Appl. Microbiol. 14:372-378.
15. Huber, G., C. Spinnler, A. Gambacorta, and K. O. Stetter. 1989. Metallosphaera sedula gen and sp. nov. represents a new genus of aerobic, metal-mobilizing, thermoacidophilic archaebacteria. Syst. Appl. Microbiol. 12:38-47.
16. Huber, G., E. Drobner, H. Huber, and K. O. Stetter. 1992. Growth by aerobic oxidation of molecular hydrogen in archaea - a metabolic property so far unknown for this domain. Syst. Appl. Microbiol. 15:502-504.
17. Huber, R., T. Wilharm, D. Huber, A. Tincone, S. Burggraf, H. König, R. Rachel, I. Rockinger, H. Fricke, and K. O. Stetter. 1992. Aquifex pyrophilus gen. nov., sp. nov., represents a novel group of marine hyperthermophilic hydrogen-oxidizing bacteria. Syst. Appl. Microbiol. 15:340-351.
18. Ishii, M., T. Miyake, T. Satoh, H. Sugiyama, Y. Oshima, T. Kodama, and Y. Igarashi. 1996. Autotrophic carbon dioxide fixation in Acidianus brierleyi. Arch. Microbiol. 166:368-371.
19. 2 fixation in Chloroflexus aurantiacus. Arch. Microbiol. 159: 257-264.
20. Ivanovsky, R. N., and E. N. Krasilnikova. 1995. Glyoxylate metabolism in Chloroflexus aurantiacus. Microbiology 64:257-261.
21. Ivanovsky, R. N., N. V. Sintsov, and E. N. Kondratieva. 1980. ATP-linked citrate lyase activity in the green sulfur bacterium Chlorobium limicola forma thiosulfatophilum. Arch. Microbiol. 128:239-241.
22. 2 assimilation in Sulfolobus brierleyi via a reductive carboxylic acid pathway. Zentbl. Bakteriol. Hyg. I. Abt. Orig. C 2:111-121.
23. Kawarabayasi, Y., M. Sawada, H. Horikawa, Y. Haikawa, Y. Hino, S. Yamamoto, M. Sekine, S. Baba, H. Kosugi, A. Hosoyama, Y. Nagai, M. Sakai, K. Ogura, R. Otuka, H. Nakazawa, M. Takamiya, Y. Ohfuku, T. Funahashi, T. Tanaka, Y. Kudoh, J. Yamazaki, N. Kushida, A. Oguchi, K. Aoki, Y. Nakamura, T. F. Robb, K. Horikoshi, Y. Masuchi, H. Shizuya, and H. Kikuchi. 1998. Complete sequence and gene organization of the genome of a hyperthermophilic archaebacterium, Pyrococcus horikoshii OT3. DNA Res. 5:55-76.
24. Klenk, H. P., R. A. Clayton, J. F. Tomb, O. White, K. E. Nelson, K. A. Ketchum, R. J. Dodson, M. Gwinn, E. K. Hickey, J. D. Peterson, D. L. Richardson, A. R. Kerlavage, D. E. Graham, N. C. Kyrpides, R. D. Fleischmann, J. Quackenbush, N. H. Lee, G. G. Sutton, S. Gill, E. F. Kirkness, B. A. Dougherty, K. McKenney, M. D. Adams, B. Loftus, and J. C. Venter. 1997. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390:364-370.
25. Kondratieva, E. N., R. N. Ivanovsky, and E. N. Krasilnikova. 1992. Carbon metabolism in Chloroflexus aurantiacus. FEMS Microbiol. Lett. 100:269-272.
26. Kurr, M., R. Huber, H. König, H. W. Jannasch, H. Fricke, A. Trincone, J. K. Kristjansson, and K. O. Stetter. 1991. Methanopyrus kandleri, gen. and sp. nov., represents a novel group of hyperthermophilic methanogens, growing at 110°C. Arch. Microbiol. 156:239-247.
27. Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
28. Norris, P., A. Nixon, and A. Hart. 1989. Acidophilic, mineral-oxidizing bacteria: the utilization of carbon dioxide with particular reference to autotrophy ib Sulfolobus, p. 24-43. In M. S. Da Costa, J. C. Duarte, and R. A. D. Williams (ed.), Microbiology of extreme environments and its potential for biotechnology. Elsevier, London, United Kingdom.
29. Quayle, J. R., and D. B. Keech. 1959. Carbon assimilation by Pseudomonas oxalaticus (OX 1). 2. Formate and carbon dioxide utilization by cell-free extracts of the organism grown on formate. Biochem. J. 72:631-637.
30. Rajagopalan, K., and W. Altekar. 1994. Characterisation and purification of ribulose-bisphosphate carboxylase from heterotrophically grown halophilic archaebacterium, Haloferax mediterranei. Eur. J. Biochem. 221:863-869.
31. Schachter, D., and J. V. Taggart. 1976. Benzoyl coenzyme A and hippurate synthesis. J. Biol. Chem. 203:925-933.
32. Schauder, R., A. Preuß, M. Jetten, and G. Fuchs. 1989. Oxidative and reductive acetyl-CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum. 2. Demonstration of the enzymes of the pathway and comparison of CO dehydrogenase. Arch. Microbiol. 151:84-89.
33. Schauder, R., F. Widdel, and G. Fuchs. 1987. Carbon assimilation pathways in sulfate-reducing bacteria. II. Enzymes of a reductive citric acid cycle in the autotrophic Desulfobacter hydrogenophilus. Arch. Microbiol. 148:218-225.
34. Segerer, A. H., and K. O. Stetter. 1992. The order Sulfolobales, p. 684-701. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes. Springer-Verlag, Berlin, Germany.
35. Seubert, W., and H. Weicker. 1969. Pyruvate carboxylase from Pseudomonas. Methods Enzymol. XIII:258-262.
36. 2 assimilation via the reductive tricarboxylic acid cycle in an obligately autotrophic, aerobic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus. Arch. Microbiol. 141:198-203.
37. 2 fixation pathways in the sulfur-reducing archaebacterium Thermoproteus neutrophilus and in the phototrophic eubacterium Chloroflexus aurantiacus. Eur. J. Biochem. 205:853-866.
38. 2 fixation pathway in the phototrophic bacterium Chloroflexus aurantiacus, the 3-hydroxypropionate cycle. Eur. J. Biochem. 215:633-643.
39. Toh, H., H. Kondo, and T. Tanabe. 1993. Molecular evolution of biotin-dependent carboxylases. Eur. J. Biochem. 215:687-696.
40. 2O in Ferroglobus placidus. Arch. Microbiol. 167:19-23.
41. 2 fixation in Archaeoglobus lithotrophicus and the lack of carbon monoxide dehydrogenase in the heterotrophic A. profundus. Arch. Microbiol. 163: 112-118.
42. Ward, J. M., P. H. Smith, and D. R. Boone. 1989. Emended description of strain PS (= OGC 70 = ATCC 33273 = DSM 1537), the type strain of Methanococcus voltae. Int. J. Syst. Bacteriol. 39:493-494.
43. Watson, G. M., and F. R. Tabita. 1997. Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: a molecule for phylogenetic and enzymological investigation. FEMS Microbiol. Lett. 146:13-22.
44. Widdel, F., P. E. Rouviere, and R. S. Wolfe. 1988. Classification of secondary alcohol-utilizing methanogens including a new thermophilic isolate. Arch. Microbiol. 150:477-481.
45. Wood, H. G., and L. G. Ljungdahl. 1991. Autotrophic character of the acetogenic bacteria, p. 201-250. In J. M. Shively and L. L. Barton (ed.), Variations in autotrophic life. Academic Press, Inc., San Diego, Calif.
46. Zeikus, J. G., G. Fuchs, W. Kenealy, and R. K. Thauer. 1977. Oxidoreductases involved in cell carbon synthesis of Methanobacterium thermoautotrophicum. J. Bacteriol. 132:604-613.
47. Zillig, W., K. O. Stetter, W. Schäfer, D. Janekovic, S. Wunderl, I. Holz, and P. Palm. 1981. Thermoproteales: a novel type of extremely thermoacidophilic anaerobic archaebacteria isolated from Icelandic solfatares. Zentbl. Bakteriol. Hyg. Abt. Orig. C 2:205-227.