Genetic diversity and population differentiation of guignardia mangiferae from "tahiti" acid lime

The Scientific World Journal

Volumn 2012, Issue , 2012, Pages

  Wickert, Ester ^a   Lemos, Eliana Gertrudes De MacEdo ^b   Kishi, Luciano Takeshi ^b   De Souza, Andressa ^b   De Goes, Antonio ^b  

^a EMPRESA DE PESQUISA AGROPECUÁRIA E EXTENSÃO RURAL DE SANTA CATARINA   (Brazil)

^b SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM OXIDE; GUIGNARDIA MANGIFERAE EXTRACT; PLANT EXTRACT; UNCLASSIFIED DRUG;

ARTICLE; CISTRON; CITRUS FRUIT; CONTROLLED STUDY; GENE FLOW; GENE SEQUENCE; GENETIC VARIABILITY; HAPLOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION; POPULATION DIFFERENTIATION; ASCOMYCETES; CITRUS; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY;

CITRUS; CITRUS AURANTIIFOLIA; FUNGI; GUIGNARDIA MANGIFERAE;

ASCOMYCOTA; CITRUS; GENETIC VARIATION; HAPLOTYPES;

EID: 84861022105     PISSN: None     EISSN: 1537744X     Source Type: Journal    
DOI: 10.1100/2012/125654     Document Type: Article

References (42)

1. Crous P. W., Gams W., Stalpers J. A., Robert V., Stegehuis G., MycoBank: an online initiative to launch mycology into the 21st century Studies in Mycology 2005 50 1 19 22 (Pubitemid 40451505)
2. Rodrigues K. F., Sieber T. N., Grnig C. R., Holdenrieder O., Characterization of Guignardia mangiferae isolated from tropical plants based on morphology, ISSR-PCR amplifications and ITS1-5.8S-ITS2 sequences Mycological Research 2004 108 1 45 52 (Pubitemid 38319230)
3. Baayen R. P., Bonants P. J. M., Verkley G., Carroll G. C., Van der Aa H. A., De Weerdt M., Van Brouwershaven I. R., Schutte G. C., Maccheroni W., Glienke de Blanco C., Azevedo J. L., Nonpathogenic isolates of the citrus black spot fungus, Guignardia citricarpa, identified as a cosmopolitan endophyte of woody plants, G. mangiferae (Phyllosticta capitalensis) Phytopathology 2002 92 5 464 477 (Pubitemid 34439748)
4. Bonants P. J. M., Carroll G. C., De Weerdt M., Van Brouwershaven I. R., Baayen R. P., Development and validation of a fast PCR-based detection method for pathogenic isolates of the citrus black spot fungus, Guignardia citricarpa European Journal of Plant Pathology 2003 109 5 503 513 (Pubitemid 36872439)
5. Wickert E., de Goes A., de Macedo Lemos G., de Souza A., da Silveira.. L., Pereira F. D., Rinaldo D., Phylogenetic relationships and diversity of Guignardia spp isolated from different hosts on ITS1-5,8S-ITS2 region Revista Brasileira de Fruticultura 2009 31 2 360 380
6. Xu J., Fundamentals of fungal molecular population genetic analyses Current Issues in Molecular Biology 2006 8 2 75 90 (Pubitemid 44121989)
7. Gargas A., Depriest P. T., A nomenclature for fungus PCR primers with examples from intron-containing SsurDNA Mycologia 2006 88 5 745 748
8. Ristaino J. B., Madritch M., Trout C. L., Parra G., PCR amplification of ribosomal DNA for species identification in the plant pathogen genus Phytophthora Applied and Environmental Microbiology 1998 64 3 948 954 (Pubitemid 28108469)
9. Dresler-Nurmi A., Kaijalainem S., Lindstrom K., Hatakka A., Grouping of lignin degrading corticiod fungi based on RFLP analysis od 18S rDNA and ITS regions Mycological Research 1999 103 990 996 (Pubitemid 30322648)
10. Baciarelli-Falini L., Rubini A., Riccioni C., Paolocci F., Morphological and molecular analyses of ectomycorrhizal diversity in a man-made T. melanosporum plantation: description of novel truffle-like morphotypes Mycorrhiza 2006 16 7 475 484 (Pubitemid 44379345)
11. Kreitman M., Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster Nature 1983 304 5925 412 417 (Pubitemid 13077938)
12. Rozas J., Snchez-DelBarrio J. C., Messeguer X., Rozas R., DnaSP, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 2003 19 18 2496 2497 (Pubitemid 38016658)
13. Baldassari R. B., Wickert E., de Goes A., Pathogenicity, colony morphology and diversity of isolates of Guignardia citricarpa and G. mangiferae isolated from Citrus spp European Journal of Plant Pathology 2008 120 2 103 110
14. Kuramae-Izioka E. E., A rapid, easy and high yield protocol for total genomic DNA isolation of Colletotrichum gloesporioides and Fusarium oxysporum Revista Unimar 1997 19 683 689
15. White T. J., Bruns T., Lee S., Taylor J., Innis M. A., Gelfand D. H., Sninsky J. J., White T. J., Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics PCR Protocols: A Guide to Methods and Applications 1990 New York, NY, USA Academic Press 315 322
16. Gordon D., Abajian C., Green P., Consed: a graphical tool for sequence finishing Genome Research 1998 8 3 195 202 (Pubitemid 28177231)
17. Altschul S. F., Madden T. L., Schffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Research 1997 25 17 3389 3402 (Pubitemid 27359211)
18. Nei M., Genetic distance between populations American Naturalist 1972 106 283 292
19. Nei M., Kumar S., Molecular Evolution and Phylogenetics 2000 Oxford, UK Oxford University Press
20. Kimura M., A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution 1980 16 2 111 120 (Pubitemid 11166431)
21. Kumar S., Tamura K., Nei M., MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Briefings in Bioinformatics 2004 5 2 150 163
22. Excoffier L., Smouse P. E., Quattro J. M., Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data Genetics 1992 131 2 479 491
23. Martin A. P., Phylogenetic approaches for describing and comparing the diversity of microbial communities Applied and Environmental Microbiology 2002 68 8 3673 3682 (Pubitemid 34836673)
24. Excoffier L., Laval G., Schneider S., Arlequin ver. 3.0: an integrated software package for population genetics data analysis Evolutionary Bioinformatics Online 2005 1 47 50
25. Hudson R. R., Slatkin M., Maddison W. P., Estimation of levels of gene flow from DNA sequence data Genetics 1992 132 2 583 589
26. Saitou N., Nei M., The neighbor-joining method: a new method for reconstructing phylogenetic trees Molecular Biology and Evolution 1987 4 4 406 425
27. Felsentein J., Phylip- phylogeny inference package (version 3.2) Cladistics 1989 5 164 166
28. Pandey A. K., Reddy M. S., Suryanarayanan T. S., ITS-RFLP and ITS sequence analysis of a foliar endophytic Phyllosticta from different tropical trees Mycological Research 2003 107 4 439 444 (Pubitemid 36658834)
29. Arnold A. E., Understanding the diversity of foliar endophytic fungi: progress, challenges, and frontiers Fungal Biology Reviews 2007 21 2-3 51 66 (Pubitemid 47411686)
30. Kotzé J. M., Whiteside J. O., Garnsey S. M., Timmer L. W., Black spot Compendium of Citrus Disease 1988 Delray Beach, Fla, USA APS Press 10 12
31. Timmer L. W., Timmer L. W., Duncan L. W., Diseases of fruit and foliage Citrus Health Management 1999 Delray Beach, Fla, USA APS Press 107 123
32. Okane I., Nakagiri A., Ito T., Identity of Guignardia sp. inhabiting ericaceous plants Canadian Journal of Botany 2001 79 1 101 109 (Pubitemid 32235204)
33. Schulz B., Boyle C., The endophytic continuum Mycological Research 2005 109 6 661 686 (Pubitemid 40968651)
34. Saikkonen K., Wli P., Helander M., Faeth S. H., Evolution of endophyte-plant symbioses Trends in Plant Science 2004 9 6 275 280 (Pubitemid 38708848)
35. Clarke B. B., White J. F., Hurley R. H., Torres M. S., Sun S., Huff D. R., Endophyte-mediated suppression of dollar spot disease in fine fescues Plant Disease 2006 90 8 994 998 (Pubitemid 44141347)
36. Kelemu S., White J. F., Muoz F., Takayama Y., An endophyte of the tropical forage grass Brachiaria brizantha: isolating, identifying, and characterizing the fungus, and determining its antimycotic properties Canadian Journal of Microbiology 2001 47 1 55 62 (Pubitemid 32155986)
37. Hallman J., Sikora R., Influence of Fusariumoxysporum, a mutualistic fungal endophyte, on Meloidogyne incognita infection of tomato Journal of Plant Disease and Protection 1995 101 475 481
38. Sikora R. A., Pocasangre L., Felde A. Z., Niere B., Vu T. T., Dababat A. A., Mutualistic endophytic fungi and in-planta suppressiveness to plant parasitic nematodes Biological Control 2008 46 1 15 23
39. Meja L. C., Rojas E. I., Maynard Z., Bael S. V., Arnold A. E., Hebbar P., Samuels G. J., Robbins N., Herre E. A., Endophytic fungi as biocontrol agents of Theobroma cacao pathogens Biological Control 2008 46 1 4 14
40. Slippers B., Wingfield M. J., Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact Fungal Biology Reviews 2007 21 2-3 90 106 (Pubitemid 47405319)
41. Arnold A. E., Meja L. C., Kyllo D., Rojas E. I., Maynard Z., Robbins N., Herre E. A., Fungal endophytes limit pathogen damage in a tropical tree Proceedings of the National Academy of Sciences of the United States of America 2003 100 26 15649 15654 (Pubitemid 38021044)
42. Higgins K. L., Arnold A. E., Miadlikowska J., Sarvate S. D., Lutzoni F., Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages Molecular Phylogenetics and Evolution 2007 42 2 543 555 (Pubitemid 44751515)