-
1
-
-
0037393246
-
An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG II
-
APG II .
-
APG II (2003) An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG II. Botanical Journal of the Linnean Society, 141, 399-436.
-
(2003)
Botanical Journal of the Linnean Society
, vol.141
, pp. 399-436
-
-
-
2
-
-
54149092976
-
Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years
-
Barker MS, Kane NC, Matvienko M et al. (2008) Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Molecular Biology and Evolution, 25, 2445-2455.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 2445-2455
-
-
Barker, M.S.1
Kane, N.C.2
Matvienko, M.3
-
3
-
-
35148832098
-
Molecular phylogeny of the genus Guizotia (Asteraceae) using DNA sequences derived from ITS
-
Bekele E, Geleta M, Dagne K et al. (2007) Molecular phylogeny of the genus Guizotia (Asteraceae) using DNA sequences derived from ITS. Genetic Resources and Crop Evolution, 54, 1419-1427.
-
(2007)
Genetic Resources and Crop Evolution
, vol.54
, pp. 1419-1427
-
-
Bekele, E.1
Geleta, M.2
Dagne, K.3
-
4
-
-
33847051947
-
The molecular ecologist's guide to expressed sequence tags
-
Bouck A, Vision T (2007) The molecular ecologist's guide to expressed sequence tags. Molecular Ecology, 16, 907-924.
-
(2007)
Molecular Ecology
, vol.16
, pp. 907-924
-
-
Bouck, A.1
Vision, T.2
-
6
-
-
0030918808
-
The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families
-
Cosner ME, Jansen RK, Palmer JD, Downie SR (1997) The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families. Current Genetics, 31, 419-429.
-
(1997)
Current Genetics
, vol.31
, pp. 419-429
-
-
Cosner, M.E.1
Jansen, R.K.2
Palmer, J.D.3
Downie, S.R.4
-
7
-
-
56149096455
-
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
-
Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T (2008) Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Research, 36, e122.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Cronn, R.1
Liston, A.2
Parks, M.3
Gernandt, D.S.4
Shen, R.5
Mockler, T.6
-
8
-
-
33744822985
-
Widespread genome duplications throughout the history of flowering plants
-
Cui L, Wall PK, Leebens-Mack JH et al. (2006) Widespread genome duplications throughout the history of flowering plants. Genome Research, 16, 738-749.
-
(2006)
Genome Research
, vol.16
, pp. 738-749
-
-
Cui, L.1
Wall, P.K.2
Leebens-Mack, J.H.3
-
10
-
-
85007110786
-
Arlequin (version 3.0): an integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
-
(2005)
Evolutionary Bioinformatics Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
11
-
-
34147132184
-
Genetic diversity of Guizotia abyssinica (L.f.) Cass. (Asteraceae) from Ethiopia as revealed by random amplified polymorphic DNA (RAPD)
-
Geleta M, Bryngelsson T, Bekele E, Dagne K (2007) Genetic diversity of Guizotia abyssinica (L.f.) Cass. (Asteraceae) from Ethiopia as revealed by random amplified polymorphic DNA (RAPD). Genetic Resources and Crop Evolution, 54, 601-614.
-
(2007)
Genetic Resources and Crop Evolution
, vol.54
, pp. 601-614
-
-
Geleta, M.1
Bryngelsson, T.2
Bekele, E.3
Dagne, K.4
-
12
-
-
49149122071
-
Assessment of genetic diversity of Guizotia abyssinica (L.f.) Cass. (Asteraceae) from Ethiopia using amplified fragment length polymorphism
-
Geleta M, Bryngelsson T, Bekele E, Dagne K (2008) Assessment of genetic diversity of Guizotia abyssinica (L.f.) Cass. (Asteraceae) from Ethiopia using amplified fragment length polymorphism. Plant Genetic Resources, 6, 41-51.
-
(2008)
Plant Genetic Resources
, vol.6
, pp. 41-51
-
-
Geleta, M.1
Bryngelsson, T.2
Bekele, E.3
Dagne, K.4
-
13
-
-
0006188387
-
Promoting the Conservation and Use of Underutilized and Neglected Crops (IPGRI)
-
IPGRI, Rome, Italy.
-
Getinet A, Sharma SM (1996) Niger, Guizotia abyssinica (L.f.) Cass. In: Promoting the Conservation and Use of Underutilized and Neglected Crops (IPGRI) Vol. no. 5, 59 p, IPGRI, Rome, Italy.
-
(1996)
Niger, Guizotia abyssinica (L.f.) Cass
, Issue.1
, pp. 59
-
-
Getinet, A.1
Sharma, S.M.2
-
14
-
-
21344474571
-
Chloroplast genetic engineering: recent advances and future perspectives
-
Grevich JJ, Daniell H (2005) Chloroplast genetic engineering: recent advances and future perspectives. Critical Reviews in Plant Sciences, 24, 83-107.
-
(2005)
Critical Reviews in Plant Sciences
, vol.24
, pp. 83-107
-
-
Grevich, J.J.1
Daniell, H.2
-
15
-
-
0026689178
-
Performing the exact test of Hardy-Weinberg proportion for multiple alleles
-
Guo S, Thompson E (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
-
(1992)
Biometrics
, vol.48
, pp. 361-372
-
-
Guo, S.1
Thompson, E.2
-
16
-
-
0029933276
-
An improved sequence assembly program
-
Huang X (1996) An improved sequence assembly program. Genomics, 33, 21-31.
-
(1996)
Genomics
, vol.33
, pp. 21-31
-
-
Huang, X.1
-
17
-
-
19944424442
-
Methods for obtaining and analyzing whole chloroplast genome sequences
-
Jansen RK, Raubeson LA, Boore JL et al. (2005) Methods for obtaining and analyzing whole chloroplast genome sequences. Methods in Enzymology, 395, 348-384.
-
(2005)
Methods in Enzymology
, vol.395
, pp. 348-384
-
-
Jansen, R.K.1
Raubeson, L.A.2
Boore, J.L.3
-
18
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen RK, Cai Z, Raubeson LA et al. (2007) Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proceedings of the National Academy of Sciences of the United States of America, 104, 19369-19374.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 19369-19374
-
-
Jansen, R.K.1
Cai, Z.2
Raubeson, L.A.3
-
19
-
-
36448948250
-
Extending assembly of short DNA sequences to handle error
-
Jeck WR, Reinhardt JA, Baltrus DA et al. (2007) Extending assembly of short DNA sequences to handle error. Bioinformatics, 23, 2942-2944.
-
(2007)
Bioinformatics
, vol.23
, pp. 2942-2944
-
-
Jeck, W.R.1
Reinhardt, J.A.2
Baltrus, D.A.3
-
20
-
-
42949114454
-
DNA barcoding the floras of biodiversity hotspots
-
Lahaye R, Van Der Bank M, Bogarin D et al. (2008) DNA barcoding the floras of biodiversity hotspots. PNAS, 105, 2923-2928.
-
(2008)
PNAS
, vol.105
, pp. 2923-2928
-
-
Lahaye, R.1
Van Der Bank, M.2
Bogarin, D.3
-
21
-
-
17844368328
-
Analysis of the floral transcriptome uncovers new regulators of organ determination and gene families related to flower organ differentiation in Gerbera hybrida (Asteraceae)
-
Laitinen RA, Immanen J, Auvinen P et al. (2005) Analysis of the floral transcriptome uncovers new regulators of organ determination and gene families related to flower organ differentiation in Gerbera hybrida (Asteraceae). Genome Research, 15, 475-486.
-
(2005)
Genome Research
, vol.15
, pp. 475-486
-
-
Laitinen, R.A.1
Immanen, J.2
Auvinen, P.3
-
22
-
-
36048989002
-
OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
-
Lohse M, Drechsel O, Bock R (2007) OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Current Genetics, 52, 267-274.
-
(2007)
Current Genetics
, vol.52
, pp. 267-274
-
-
Lohse, M.1
Drechsel, O.2
Bock, R.3
-
23
-
-
33748700612
-
RBR: library-less repeat detection for ESTs
-
Malde K, Schneeberger K, Coward E, Jonassen I (2006) RBR: library-less repeat detection for ESTs. Bioinformatics (Oxford, England), 22, 2232-2236.
-
(2006)
Bioinformatics (Oxford, England)
, vol.22
, pp. 2232-2236
-
-
Malde, K.1
Schneeberger, K.2
Coward, E.3
Jonassen, I.4
-
24
-
-
0001883037
-
The EMMIX software for the fitting of mixtures of normal and t-components
-
McLachlan GJ, Peel D, Basford KE, Adams P (1999) The EMMIX software for the fitting of mixtures of normal and t-components. Journal of Statistical Software, 4, 1-14.
-
(1999)
Journal of Statistical Software
, vol.4
, pp. 1-14
-
-
McLachlan, G.J.1
Peel, D.2
Basford, K.E.3
Adams, P.4
-
25
-
-
1542347045
-
zPicture: dynamic alignment and visualization tool for analyzing conservation profiles
-
Ovcharenko I, Loots GG, Hardison RC, Miller W, Stubbs L (2004) zPicture: dynamic alignment and visualization tool for analyzing conservation profiles. Genome Research, 14, 472-477.
-
(2004)
Genome Research
, vol.14
, pp. 472-477
-
-
Ovcharenko, I.1
Loots, G.G.2
Hardison, R.C.3
Miller, W.4
Stubbs, L.5
-
26
-
-
0033965855
-
The TIGR gene indices: reconstruction and representation of expressed gene sequences
-
Quackenbush J, Liang F, Holt I, Pertea G, Upton J (2000) The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research, 28, 141-145.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 141-145
-
-
Quackenbush, J.1
Liang, F.2
Holt, I.3
Pertea, G.4
Upton, J.5
-
27
-
-
70149113077
-
R: A Language and Environment for Statistical Computing
-
R Development Core Team Vienna, Austria.
-
R Development Core Team (2009) R: A Language and Environment for Statistical Computing. Vienna, Austria.
-
(2009)
-
-
-
28
-
-
0037249498
-
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
-
Rhee SY, Beavis W, Berardini TZ et al. (2003) The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Research, 31, 224-228.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 224-228
-
-
Rhee, S.Y.1
Beavis, W.2
Berardini, T.Z.3
-
29
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology (Clifton, NJ), 132, 365-386.
-
(2000)
Methods in Molecular Biology (Clifton, NJ)
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
30
-
-
19944430021
-
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
-
Shaw J, Lickey EB, Beck JT et al. (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany, 92, 142-166.
-
(2005)
American Journal of Botany
, vol.92
, pp. 142-166
-
-
Shaw, J.1
Lickey, E.B.2
Beck, J.T.3
-
31
-
-
0030131165
-
Testing for linkage disequilibrium in genotypic data using the EM algorithm
-
Slatkin M, Excoffier L (1996) Testing for linkage disequilibrium in genotypic data using the EM algorithm. Heredity, 76, 377-383.
-
(1996)
Heredity
, vol.76
, pp. 377-383
-
-
Slatkin, M.1
Excoffier, L.2
-
32
-
-
0034882994
-
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential
-
Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Research, 11, 1441-1452.
-
(2001)
Genome Research
, vol.11
, pp. 1441-1452
-
-
Temnykh, S.1
DeClerck, G.2
Lukashova, A.3
Lipovich, L.4
Cartinhour, S.5
McCouch, S.6
-
33
-
-
33847225091
-
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats
-
Timme RE, Kuehl JV, Boore JL, Jansen RK (2007) A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. American Journal of Botany, 94, 302-312.
-
(2007)
American Journal of Botany
, vol.94
, pp. 302-312
-
-
Timme, R.E.1
Kuehl, J.V.2
Boore, J.L.3
Jansen, R.K.4
-
34
-
-
10244240599
-
Automatic annotation of organellar genomes with DOGMA
-
Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics (Oxford, England), 20, 3252-3255.
-
(2004)
Bioinformatics (Oxford, England)
, vol.20
, pp. 3252-3255
-
-
Wyman, S.K.1
Jansen, R.K.2
Boore, J.L.3
-
35
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18, 821-829.
-
(2008)
Genome Research
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
|