메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Selective enrichment and sequencing of whole mitochondrial genomes in the presence of nuclear encoded mitochondrial pseudogenes (Numts)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; INSECT PROTEIN;

EID: 84860992787     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037142     Document Type: Article
Times cited : (34)

References (40)
  • 1
    • 0034906558 scopus 로고    scopus 로고
    • Rickettsiaceae, rickettsia-like endosymbionts, and the origin of mitochondria
    • Emelyanov VV, (2001) Rickettsiaceae, rickettsia-like endosymbionts, and the origin of mitochondria. Bioscience Reports 21: 1-17.
    • (2001) Bioscience Reports , vol.21 , pp. 1-17
    • Emelyanov, V.V.1
  • 2
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore JL, (1999) Animal mitochondrial genomes. Nucleic Acids Research 27: 1767-1780.
    • (1999) Nucleic Acids Research , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 3
    • 0036928484 scopus 로고    scopus 로고
    • Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
    • Kaneko T, Nakamura Y, Sato S, Minamisawa K, Uchiumi T, et al. (2002) Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Research 9: 189-197.
    • (2002) DNA Research , vol.9 , pp. 189-197
    • Kaneko, T.1    Nakamura, Y.2    Sato, S.3    Minamisawa, K.4    Uchiumi, T.5
  • 5
    • 42549083356 scopus 로고    scopus 로고
    • Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria
    • Zhang J, Li X, Mueller M, Wang Y, Zong C, et al. (2008) Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria. Proteomics 8: 1564-1575.
    • (2008) Proteomics , vol.8 , pp. 1564-1575
    • Zhang, J.1    Li, X.2    Mueller, M.3    Wang, Y.4    Zong, C.5
  • 6
    • 0028363062 scopus 로고
    • Numt: a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat
    • Lopez JV, Yuhki N, Masuda R, Modi W, O'Brien SJ, (1994) Numt: a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. Journal of Molecular Evolution 39: 174-190.
    • (1994) Journal of Molecular Evolution , vol.39 , pp. 174-190
    • Lopez, J.V.1    Yuhki, N.2    Masuda, R.3    Modi, W.4    O'Brien, S.J.5
  • 7
    • 0034882969 scopus 로고    scopus 로고
    • The human genome project reveals a continuous transfer of large mitochondrial fragments to the nucleus
    • Mourier T, Hansen AJ, Willerslev E, Arctander P, (2001) The human genome project reveals a continuous transfer of large mitochondrial fragments to the nucleus. Molecular Biology and Evolution 18: 1833-1837.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1833-1837
    • Mourier, T.1    Hansen, A.J.2    Willerslev, E.3    Arctander, P.4
  • 9
    • 77649210966 scopus 로고    scopus 로고
    • Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes
    • Hazkani-Covo E, Zeller RM, Martin W, (2010) Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genetics 6: e1000834.
    • (2010) PLoS Genetics , vol.6
    • Hazkani-Covo, E.1    Zeller, R.M.2    Martin, W.3
  • 11
    • 0028837682 scopus 로고
    • Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoids
    • Collura RV, Stewart CB, (1995) Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoids. Nature 378: 485-489.
    • (1995) Nature , vol.378 , pp. 485-489
    • Collura, R.V.1    Stewart, C.B.2
  • 12
    • 59449099093 scopus 로고    scopus 로고
    • Primate numts and reticulate evolution of capped and golden leaf monkeys (Primates: Colobinae)
    • Karanth KP, (2008) Primate numts and reticulate evolution of capped and golden leaf monkeys (Primates: Colobinae). Journal of Biosciences 33: 761-770.
    • (2008) Journal of Biosciences , vol.33 , pp. 761-770
    • Karanth, K.P.1
  • 13
    • 0031955142 scopus 로고    scopus 로고
    • A hominoid-specific nuclear insertion of the mitochondrial D-loop: implications for reconstructing ancestral mitochondrial sequences
    • Zischler H, Geisert H, Castresana J, (1998) A hominoid-specific nuclear insertion of the mitochondrial D-loop: implications for reconstructing ancestral mitochondrial sequences. Molecular Biology and Evolution 15: 463-469.
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 463-469
    • Zischler, H.1    Geisert, H.2    Castresana, J.3
  • 17
    • 0034907535 scopus 로고    scopus 로고
    • Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus
    • Williams ST, Knowlton N, (2001) Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus. Molecular Biology and Evolution 18: 1484-1493.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1484-1493
    • Williams, S.T.1    Knowlton, N.2
  • 18
    • 0023358010 scopus 로고
    • Rapid isolation of animal mitochondrial DNA in a small fixed-angle rotor at ultrahigh speed
    • Carr SM, Griffith OM, (1987) Rapid isolation of animal mitochondrial DNA in a small fixed-angle rotor at ultrahigh speed. Biochemical Genetics 25: 385-390.
    • (1987) Biochemical Genetics , vol.25 , pp. 385-390
    • Carr, S.M.1    Griffith, O.M.2
  • 19
    • 50249154155 scopus 로고    scopus 로고
    • Isolation of mitochondria from rat brain using Percoll density gradient centrifugation
    • Sims NR, Anderson MF, (2008) Isolation of mitochondria from rat brain using Percoll density gradient centrifugation. Nature Protocols 3: 1228-1239.
    • (2008) Nature Protocols , vol.3 , pp. 1228-1239
    • Sims, N.R.1    Anderson, M.F.2
  • 22
    • 84861007421 scopus 로고    scopus 로고
    • Evidence of recent population expansion in the field cricket Teleogryllus commodus
    • Sydney, University of New South Wales
    • Cairns KC, (2009) Evidence of recent population expansion in the field cricket Teleogryllus commodus. Sydney University of New South Wales.
    • (2009)
    • Cairns, K.C.1
  • 24
    • 0033999959 scopus 로고    scopus 로고
    • Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes
    • Bensasson D, Zhang D-X, Hewitt GM, (2000) Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes. Molecular Biology and Evolution 17: 406-415.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 406-415
    • Bensasson, D.1    Zhang, D.-X.2    Hewitt, G.M.3
  • 25
    • 33845385936 scopus 로고    scopus 로고
    • Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA
    • Simon C, Buckley TR, Frati F, Stewart JB, Beckenbach AT, (2006) Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. The Annual Review of Ecology, Evolution, and Systematics 37: 545-579.
    • (2006) The Annual Review of Ecology, Evolution, and Systematics , vol.37 , pp. 545-579
    • Simon, C.1    Buckley, T.R.2    Frati, F.3    Stewart, J.B.4    Beckenbach, A.T.5
  • 29
    • 23144460836 scopus 로고    scopus 로고
    • The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    • Schattner P, Brooks AN, Lowe TM, (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Research 33: W686-W689.
    • (2005) Nucleic Acids Research , vol.33
    • Schattner, P.1    Brooks, A.N.2    Lowe, T.M.3
  • 30
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 33
    • 62149151949 scopus 로고    scopus 로고
    • Molecular and evolutionary history of melanism in North American gray wolves
    • Anderson TM, vonHoldt BM, Candille SI, Musiani M, Greco C, et al. (2009) Molecular and evolutionary history of melanism in North American gray wolves. Science 323: 1339-1343.
    • (2009) Science , vol.323 , pp. 1339-1343
    • Anderson, T.M.1    vonHoldt, B.M.2    Candille, S.I.3    Musiani, M.4    Greco, C.5
  • 34
    • 77957369032 scopus 로고    scopus 로고
    • Nuclear copies of mitochondrial genes: another problem for ancient DNA
    • den Tex R-J, Maldonado J, Thorington R, Leonard J, (2010) Nuclear copies of mitochondrial genes: another problem for ancient DNA. Genetica 138: 979-984.
    • (2010) Genetica , vol.138 , pp. 979-984
    • den Tex, R.-J.1    Maldonado, J.2    Thorington, R.3    Leonard, J.4
  • 35
    • 0028165399 scopus 로고
    • DNA sequence from Cretaceous period bone fragments
    • Woodward, Weyand N, Bunnell M, (1994) DNA sequence from Cretaceous period bone fragments. Science 266: 1229-1232.
    • (1994) Science , vol.266 , pp. 1229-1232
    • Woodward1    Weyand, N.2    Bunnell, M.3
  • 37
    • 0034830935 scopus 로고    scopus 로고
    • Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification
    • Dean FB, Nelson JR, Giesler TL, Lasken RS, (2001) Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification. Genome Research 11: 1095-1099.
    • (2001) Genome Research , vol.11 , pp. 1095-1099
    • Dean, F.B.1    Nelson, J.R.2    Giesler, T.L.3    Lasken, R.S.4
  • 38
    • 54349128351 scopus 로고    scopus 로고
    • Lost in the zygote: the dilution of paternal mtDNA upon fertilization
    • Wolff JN, Gemmell NJ, (2008) Lost in the zygote: the dilution of paternal mtDNA upon fertilization. Heredity 101: 429-434.
    • (2008) Heredity , vol.101 , pp. 429-434
    • Wolff, J.N.1    Gemmell, N.J.2
  • 39
    • 0024282746 scopus 로고
    • Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase
    • Tindall KR, Kunkel TA, (1988) Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase. Biochemistry 27: 6008-6013.
    • (1988) Biochemistry , vol.27 , pp. 6008-6013
    • Tindall, K.R.1    Kunkel, T.A.2
  • 40
    • 2442646694 scopus 로고    scopus 로고
    • Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification
    • Paez JG, Lin M, Beroukhim R, Lee JC, Zhao X, et al. (2004) Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification. Nucleic Acids Research 32: e71.
    • (2004) Nucleic Acids Research , vol.32
    • Paez, J.G.1    Lin, M.2    Beroukhim, R.3    Lee, J.C.4    Zhao, X.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.