Isolation and characterization of a high-efficiency soil atrazine-degrading Arthrobacter sp. strain

International Biodeterioration and Biodegradation

Volumn 71, Issue , 2012, Pages 61-66

  Wang, Qingfeng ^a   Xie, Shuguang ^a  

^a PEKING UNIVERSITY   (China)

Author keywords

Arthrobacter; Atrazine; Biodegradation; Bioremediation; Plasmid

Indexed keywords

AGRICULTURAL SOILS; ARTHROBACTER; ARTHROBACTER SP; ATRAZINE BIODEGRADATION; BACTERIAL STRAINS; CARBON AND NITROGEN; CONTAMINATED SOILS; CORN FIELDS; ENVIRONMENTAL CONCERNS; HEBEI PROVINCE; HIGH POTENTIAL; ISOLATION AND CHARACTERIZATION; NITROGEN SOURCES; NORTH CHINA; OPTIMUM PH; PLASMID; PLASMID DNA; PRACTICAL IMPORTANCE; SOIL AND WATER; TEMPERATURE RANGE;

BIODEGRADATION; BIOREMEDIATION; BIOTECHNOLOGY; DEGRADATION; EFFICIENCY; GENES; MICROBIOLOGY; SOIL POLLUTION; SOILS;

HERBICIDES;

AGRICULTURAL SOIL; ATRAZINE; BACTERIUM; BIODEGRADATION; BIOREMEDIATION; FERTILIZER APPLICATION; INHIBITION; MAIZE; MITOCHONDRIAL DNA; PH; PLASMID; SOIL POLLUTION; SOIL REMEDIATION;

CHINA; HEBEI;

ARTHROBACTER; ARTHROBACTER SP.; BACTERIA (MICROORGANISMS); ZEA MAYS;

EID: 84860827715     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2012.04.005     Document Type: Article

References (40)

1. Aislabie J., Bej A.K., Ryburn J., Lloyd N., Wilkins A. Characterization of Arthrobacter nicotinovorans HIM, an atrazine-degrading bacterium, from agricultural soil New Zealand. FEMS Microbiology Ecology 2005, 52:279-286.
2. Alvey S., Crowley D.E. Influence of organic amendments on biodegradation of atrazine as a nitrogen-source. Journal of Environmental Quality 1995, 24:1156-1162.
3. Assaf N.A., Turco R.F. Influence of carbon and nitrogen application on the mineralization of atrazine and its metabolites in soil. Pesticide Science 1994, 41:41-47.
4. Behki R.M., Khan S.U. Degradation of atrazine, propazine, and simazine by Rhodococcus strain B-30. Journal of Agricultural and Food Chemistry 1994, 42:1237-1241.
5. Cai B., Han Y., Liu B., Ren Y., Jiang S. Isolation and characterization of an atrazine-degrading bacterium from industrial wastewater in China. Letters in Applied Microbiology 2003, 36:272-276.
6. Entry J.A. Influence of nitrogen on atrazine and 2, 4 dichlorophenoxyacetic acid mineralization in blackwater and redwater forested wetland soils. Biology and Fertility of Soils 1999, 29:348-353.
7. Fazlurrahman, Batra M., Pandey J., Suri C.R., Jain R.K. Isolation and characterization of an atrazine-degrading Rhodococcus sp. strain MB-P1 from contaminated soil. Letters in Applied Microbiology 2009, 49:721-729.
8. Garces R.A., Hansen A.M., van Afferden M. Mineralization of atrazine in agricultural soil: inhibition by nitrogen. Environmental Toxicology and Chemistry 2007, 26:844-850.
9. Gebendinger N., Radosevich M. Inhibition of atrazine degradation by cyanazine and exogenous nitrogen in bacterial isolate M91-3. Applied Microbiology and Biotechnology 1999, 51:375-381.
10. Getenga Z., Dörfler U., Iwobi A., Schmid M., Schroll R. Atrazine and terbuthylazine mineralization by an Arthrobacter sp. isolated from a sugarcane-cultivated soil in Kenya. Chemosphere 2009, 77:534-539.
11. Houot S., Topp E., Yassir A., Soulas G. Dependence of accelerated degradation of atrazine on soil pH in French and Canadian soils. Soil Biology & Biochemistry 2000, 32:615-625.
12. Khasaeva F., Vasilyuk N., Terentyev P., Troshina M., Lebedev A.T. A novel soil bacterial strain degrading pyridines. Environmental Chemistry Letters 2011, 9:439-445.
13. Kolić N.U., HrŠak D., Kolar A.B., Petrić I., Stipicevic S., Soulas G., Martin-Laurent F. Combined metabolic activity within an atrazine-mineralizing community enriched from agrochemical factory soil. International Biodeterioration & Biodegradation 2007, 60:299-307.
14. Li R., Guo X.Q., Chen K., Zhu J.C., Li S.P., Jiang J.D. Isolation of an isocarbophos-degrading strain of Arthrobacter sp scl-2 and identification of the degradation pathway. Journal of Microbiology and Biotechnology 2009, 19:1439-1446.
15. Li Q.Y., Li Y., Zhu X.K., Cai B.L. Isolation and characterization of atrazine-degrading Arthrobacter sp. AD26 and use of this strain in bioremediation of contaminated soil. Journal of Environmental Sciences 2008, 20:1226-1230.
16. Mongodin E.F., Shapir N., Daugherty S.C., DeBoy R.T., Emerson J.B., Shvartzbeyn A., Radune D., Vamathevan J., Riggs F., Grinberg V., Khouri H., Wackett L.P., Nelson K.E., Sadowsky M.J. Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1. PLoS Genetics 2006, 2:2094-2106.
17. Mueller T.C., Steckel L.E., Radosevich M. Effect of soil pH and previous atrazine use history on atrazine degradation in a Tennessee field soil. Weed Science 2010, 58:478-483.
18. Rousseaux S., Hartmann A., Soulas G. Isolation and characterisation of new gram-negative and gram-positive atrazine degrading bacteria from different French soils. FEMS Microbiology Ecology 2001, 36:211-222.
19. Sahoo N.K., Pakshirajan K., Ghosh P.K. Enhancing the biodegradation of 4-chlorophenol by Arthrobacter chlorophenolicus A6 via medium development. International Biodeterioration & Biodegradation 2010, 64:474-480.
20. Sajjaphan K., Shapir N., Wackett L.P., Palmer M., Blackmon B., Tomkins J., Sadowsky M.J. Arthrobacter aurescens TC1atrazine catabolism genes trzN, atzB, and atzC are linked on a 160-kilobase region and are functional in Escherichia coli. Applied and Environmental Microbiology 2004, 707:4402-4407.
21. 14C ring-labeled compounds under outdoor conditions. Ecotoxicology and Environmental Safety 1988, 15:46-54.
22. Sebaï T.E., Devers-Lamrani M., Changey F., Rouard N., Martin-Laurent F. Evidence of atrazine mineralization in a soil from the Nile Delta: isolation of Arthrobacter sp. TES6, an atrazine-degrading strain. International Biodeterioration & Biodegradation 2011, 65:1249-1255.
23. Sene L., Converti A., Secchi G.A.R., Simão R.D.G. New aspects on atrazine biodegradation. Brazilian Archives of Biology and Technology 2010, 53:487-496.
24. Siddique T., Okeke B.C., Arshad M., Frankenberger W.T. Temperature and pH effects on biodegradation of hexachlorocyclohexane isomers in water and a soil slurry. Journal of Agricultural and Food Chemistry 2002, 50:5070-5076.
25. Strong L.C., McTavish H., Sadowsky M.J., Wackett L.P. Field-scale remediation of atrazine-contaminated soil using recombinant Escherichia coli expressing atrazine chlorohydrolase. Environmental Microbiology 2000, 2:91-98.
26. Strong L.C., Rosendahl C., Johnson G., Sadowsky M.J., Wackett L.P. Arthrobacter aurescens TC1 metabolizes diverse s-triazine ring compounds. Applied and Environmental Microbiology 2002, 68:5973-5980.
27. Tamura K., Dudley J., Nei M., Kumar S. MEGA4, molecular evolutionary genetics analysis, MEGA software version 4.0. Molecular Biology and Evolution 2007, 24:1596-1599.
28. Turnbull G.A., Cullington J.E., Walker A., Morgan J.A.W. Identification and characterisation of a diuron-degrading bacterium. Biology and Fertility of Soils 2001, 33:472-476.
29. Vaishampayan P.A., Kanekar P.P., Dhakephalkar P.K. Isolation and characterization of Arthrobacter sp. strain MCM B-436, an atrazine-degrading bacterium, from rhizospheric soil. International Biodeterioration & Biodegradation 2007, 60:273-278.
30. Vela N., Navarro G., Gimenez M.J., Navarro S. Gradual fall of s-triazine herbicides in drinking and wastewater samples as influenced by light and temperature. Water, Air and Soil Pollution 2004, 158:3-19.
31. Vibber L.L., Pressler M.J., Colores G.M. Isolation and characterization of novel atrazine-degrading microorganisms from an agricultural soil. Applied Microbiology and Biotechnology 2007, 75:921-928.
32. Wackett L.P., Sadowsky M.J., Martinez B., Shapir N. Biodegradation of atrazine and related s-triazine compounds: from enzymes to field studies. Applied Microbiology and Biotechnology 2002, 58:39-45.
33. Wang J.H., Zhu L.S., Liu A.J., Ma T.T., Wang Q., Xie H., Wang J., Jiang T., Zhao R.S. Isolation and characterization of an Arthrobacter sp. strain HB-5 that transforms atrazine. Environmental Geochemistry and Health 2011, 33:259-266.
34. Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 2007, 73:5261-5267.
35. Wang X.D., Liu X.J., Wang H.L., Dong Q.X. Utilization and degradation of imazaquin by a naturally occurring isolate of Arthrobacter crystallopoietes. Chemosphere 2007, 67:2156-2162.
36. Yang C.Y., Li Y., Zhang K., Wang X., Ma C.Q., Tang H.Z., Xu P. Atrazine degradation by a simple consortium of Klebsiella sp. A1 and Comamonas sp. A2 in nitrogen enriched medium. Biodegradation 2010, 21:97-105.
37. Zablotowicz R.M., Krutz L.J., Weaver M.A., Accinelli C., Reddy K.N. Glufosinate and ammonium sulfate inhibit atrazine degradation in adapted soils. Biology and Fertility of Soils 2008, 45:19-26.
38. Zhang Y., Jiang Z., Cao B., Hu M., Wang Z.G., Dong X.N. Metabolic ability and gene characteristics of Arthrobacter sp strain DNS10, the sole atrazine-degrading strain in a consortium isolated from black soil. International Biodeterioration & Biodegradation 2011, 65:1140-1144.
39. Zhang S.Y., Wan R., Wang Q.F., Xie S.G. Identification of anthracene degraders in leachate-contaminated aquifer using stable isotope probing. International Biodeterioration & Biodegradation 2011, 65:1224-1228.
40. Zhang S.Y., Wang Q.F., Xie S.G. Microbial community changes in contaminated soils in response to phenanthrene amendment. International Journal of Environmental Science and Technology 2011, 8:321-330.