메뉴 건너뛰기




Volumn 6, Issue , 2012, Pages

A network perspective on metabolic inconsistency

Author keywords

[No Author keywords available]

Indexed keywords

2 OXOADIPIC ACID; ADIPIC ACID DERIVATIVE; ALDOSTERONE; ALPHA-KETOADIPIC ACID; DELTA 1 PYRROLINE 5 CARBOXYLATE; DELTA-1-PYRROLINE-5-CARBOXYLATE; PROLINE; PYRROLE DERIVATIVE; TRANSCRIPTOME;

EID: 84860806071     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-6-41     Document Type: Article
Times cited : (24)

References (28)
  • 1
    • 58549108388 scopus 로고    scopus 로고
    • Reconstruction of biochemical networks in microorganisms
    • 3119670, 19116616
    • Feist AM, Thiele I, Reed JL, Palsson B, Herrgård MJ. Reconstruction of biochemical networks in microorganisms. Nat Rev Microbiol 2009, 7(2):129-43. 3119670, 19116616.
    • (2009) Nat Rev Microbiol , vol.7 , Issue.2 , pp. 129-143
    • Feist, A.M.1    Thiele, I.2    Reed, J.L.3    Palsson, B.4    Herrgård, M.J.5
  • 2
    • 33644527950 scopus 로고    scopus 로고
    • The model organism as a system: integrating 'omics' data sets
    • 10.1038/nrm1857, 16496022
    • Joyce AR, Palsson B. The model organism as a system: integrating 'omics' data sets. Nat Rev Mol Cell Biol 2006, 7(3):198-210. 10.1038/nrm1857, 16496022.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , Issue.3 , pp. 198-210
    • Joyce, A.R.1    Palsson, B.2
  • 3
    • 9544253891 scopus 로고    scopus 로고
    • Genome-scale models of microbial cells: evaluating the consequences of constraints
    • 10.1038/nrmicro1023, 15494745
    • Price ND, Reed JL, Palsson B. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat Rev Microbiol 2004, 2(11):886-897. 10.1038/nrmicro1023, 15494745.
    • (2004) Nat Rev Microbiol , vol.2 , Issue.11 , pp. 886-897
    • Price, N.D.1    Reed, J.L.2    Palsson, B.3
  • 4
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
    • 201879, 7986045
    • Varma A, Palsson B. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl Environ Microbiol 1994, 60(10):3724-3731. 201879, 7986045.
    • (1994) Appl Environ Microbiol , vol.60 , Issue.10 , pp. 3724-3731
    • Varma, A.1    Palsson, B.2
  • 5
    • 0034625143 scopus 로고    scopus 로고
    • The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities
    • 10.1073/pnas.97.10.5528, 25862, 10805808
    • Edwards JS, Palsson B. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc Natl Acad Sci USA 2000, 97(10):5528-5533. 10.1073/pnas.97.10.5528, 25862, 10805808.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.10 , pp. 5528-5533
    • Edwards, J.S.1    Palsson, B.2
  • 6
    • 3843128481 scopus 로고    scopus 로고
    • Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
    • 10.1101/gr.2250904, 442145, 15197165
    • Duarte N, Herrgard MJ, Palsson B. Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res 2004, 14(7):1298-1309. 10.1101/gr.2250904, 442145, 15197165.
    • (2004) Genome Res , vol.14 , Issue.7 , pp. 1298-1309
    • Duarte, N.1    Herrgard, M.J.2    Palsson, B.3
  • 7
    • 33846910173 scopus 로고    scopus 로고
    • Global reconstruction of the human metabolic network based on genomic and bibliomic data
    • 10.1073/pnas.0610772104, 1794290, 17267599
    • Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson B. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc Natl Acad Sci USA 2007, 104(6):1777-82. 10.1073/pnas.0610772104, 1794290, 17267599.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.6 , pp. 1777-1782
    • Duarte, N.C.1    Becker, S.A.2    Jamshidi, N.3    Thiele, I.4    Mo, M.L.5    Vo, T.D.6    Srivas, R.7    Palsson, B.8
  • 10
    • 6044265058 scopus 로고    scopus 로고
    • Integration of gene expression data into genome-scale metabolic models
    • 10.1016/j.ymben.2003.12.002, 15491858
    • Akesson M, Förster J, Nielsen J. Integration of gene expression data into genome-scale metabolic models. Metab Eng 2004, 6(4):285-93. 10.1016/j.ymben.2003.12.002, 15491858.
    • (2004) Metab Eng , vol.6 , Issue.4 , pp. 285-293
    • Akesson, M.1    Förster, J.2    Nielsen, J.3
  • 11
    • 77956417789 scopus 로고    scopus 로고
    • Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism
    • 2964116, 20823844
    • Jerby L, Shlomi T, Ruppin E. Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism. Mol Syst Biol 2010, 6:401. 2964116, 20823844.
    • (2010) Mol Syst Biol , vol.6 , pp. 401
    • Jerby, L.1    Shlomi, T.2    Ruppin, E.3
  • 12
    • 70049110173 scopus 로고    scopus 로고
    • Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production
    • 10.1371/journal.pcbi.1000489, 2726785, 19714220
    • Colijn C, Brandes A, Zucker J, Lun DS, Weiner B, Farhat MR, Cheng TY, Moody DB, Murray M, Galagan JE. Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. PLoS Comput Biol 2009, 5(8):e1000489. 10.1371/journal.pcbi.1000489, 2726785, 19714220.
    • (2009) PLoS Comput Biol , vol.5 , Issue.8
    • Colijn, C.1    Brandes, A.2    Zucker, J.3    Lun, D.S.4    Weiner, B.5    Farhat, M.R.6    Cheng, T.Y.7    Moody, D.B.8    Murray, M.9    Galagan, J.E.10
  • 13
    • 79951536020 scopus 로고    scopus 로고
    • Functional integration of a metabolic network model and expression data without arbitrary thresholding
    • 10.1093/bioinformatics/btq702, 21172910
    • Jensen PA, Papin JA. Functional integration of a metabolic network model and expression data without arbitrary thresholding. Bioinformatics 2011, 27(4):541-547. 10.1093/bioinformatics/btq702, 21172910.
    • (2011) Bioinformatics , vol.27 , Issue.4 , pp. 541-547
    • Jensen, P.A.1    Papin, J.A.2
  • 14
    • 44949225040 scopus 로고    scopus 로고
    • Context-specific metabolic networks are consistent with experiments
    • 10.1371/journal.pcbi.1000082, 2366062, 18483554
    • Becker SA, Palsson B. Context-specific metabolic networks are consistent with experiments. PLoS Comput Biol 2008, 4(5):e1000082. 10.1371/journal.pcbi.1000082, 2366062, 18483554.
    • (2008) PLoS Comput Biol , vol.4 , Issue.5
    • Becker, S.A.1    Palsson, B.2
  • 15
    • 79952569227 scopus 로고    scopus 로고
    • Analog regulation of metabolic demand
    • 10.1186/1752-0509-5-40, 3068955, 21406074
    • Sonnenschein N, Geertz M, Muskhelishvili G, Hütt MT. Analog regulation of metabolic demand. BMC Syst Biol 2011, 5:40. 10.1186/1752-0509-5-40, 3068955, 21406074.
    • (2011) BMC Syst Biol , vol.5 , pp. 40
    • Sonnenschein, N.1    Geertz, M.2    Muskhelishvili, G.3    Hütt, M.T.4
  • 16
    • 77949360667 scopus 로고    scopus 로고
    • EBER2 RNA-induced transcriptome changes identify cellular processes likely targeted during Epstein Barr Virus infection
    • 10.1186/1756-0500-1-100, 2588618, 18957101
    • Eilebrecht S, Pellay FX, Odenwälder P, Brysbaert G, Benecke BJ, Benecke A. EBER2 RNA-induced transcriptome changes identify cellular processes likely targeted during Epstein Barr Virus infection. BMC Res Notes 2008, 1:100. 10.1186/1756-0500-1-100, 2588618, 18957101.
    • (2008) BMC Res Notes , vol.1 , pp. 100
    • Eilebrecht, S.1    Pellay, F.X.2    Odenwälder, P.3    Brysbaert, G.4    Benecke, B.J.5    Benecke, A.6
  • 17
    • 77951612556 scopus 로고    scopus 로고
    • BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
    • Schellenberger J, Park JO, Conrad TM, Palsson B. BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinf 2010, 11:213.
    • (2010) BMC Bioinf , vol.11 , pp. 213
    • Schellenberger, J.1    Park, J.O.2    Conrad, T.M.3    Palsson, B.4
  • 18
    • 53849096017 scopus 로고    scopus 로고
    • The metabolism of proline, a stress substrate, modulates carcinogenic pathways
    • 10.1007/s00726-008-0063-4, 18401543
    • Phang JM, Donald SP, Pandhare J, Liu Y. The metabolism of proline, a stress substrate, modulates carcinogenic pathways. Amino acids 2008, 35(4):681-690. 10.1007/s00726-008-0063-4, 18401543.
    • (2008) Amino acids , vol.35 , Issue.4 , pp. 681-690
    • Phang, J.M.1    Donald, S.P.2    Pandhare, J.3    Liu, Y.4
  • 19
    • 67649872627 scopus 로고    scopus 로고
    • Toolbox model of evolution of prokaryotic metabolic networks and their regulation
    • 10.1073/pnas.0903206106, 2701025, 19482938
    • Maslov S, Krishna S, Pang TY, Sneppen K. Toolbox model of evolution of prokaryotic metabolic networks and their regulation. Proc Natl Acad Sci USA 2009, 106(24):9743-8. 10.1073/pnas.0903206106, 2701025, 19482938.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.24 , pp. 9743-9748
    • Maslov, S.1    Krishna, S.2    Pang, T.Y.3    Sneppen, K.4
  • 22
    • 58149250491 scopus 로고    scopus 로고
    • Blood pressure outcome of adrenalectomy in patients with primary hyperaldosteronism with or without unilateral adenoma
    • 10.1097/HJH.0b013e3283060f0c, 18698217
    • Letavernier E, Peyrard S, Amar L, Zinzindohoue F, Fiquet B, Plouin PF. Blood pressure outcome of adrenalectomy in patients with primary hyperaldosteronism with or without unilateral adenoma. J Hypertens 2008, 26:1816-23. 10.1097/HJH.0b013e3283060f0c, 18698217.
    • (2008) J Hypertens , vol.26 , pp. 1816-1823
    • Letavernier, E.1    Peyrard, S.2    Amar, L.3    Zinzindohoue, F.4    Fiquet, B.5    Plouin, P.F.6
  • 25
    • 33646200155 scopus 로고    scopus 로고
    • Expression dynamics of a cellular metabolic network
    • 1681454, 16729051
    • Kharchenko P, Church GM, Vitkup D. Expression dynamics of a cellular metabolic network. Mol Syst Biol 2005, 1:2005.0016. 1681454, 16729051.
    • (2005) Mol Syst Biol , vol.1
    • Kharchenko, P.1    Church, G.M.2    Vitkup, D.3
  • 26
    • 77955714194 scopus 로고    scopus 로고
    • Glucocorticoid receptors in dopaminoceptive neurons, key for cocaine, are dispensable for molecular and behavioral morphine responses
    • 10.1016/j.biopsych.2010.03.037, 20554270
    • Barik J, Parnaudeau S, Lampin-Saint-Amaux A, Guiard BP, Golib-Dzib JF, Bocquet O, Bailly A, Benecke A, Tronche F. Glucocorticoid receptors in dopaminoceptive neurons, key for cocaine, are dispensable for molecular and behavioral morphine responses. Biol Psychiatry 2010, 68:231-9. 10.1016/j.biopsych.2010.03.037, 20554270.
    • (2010) Biol Psychiatry , vol.68 , pp. 231-239
    • Barik, J.1    Parnaudeau, S.2    Lampin-Saint-Amaux, A.3    Guiard, B.P.4    Golib-Dzib, J.F.5    Bocquet, O.6    Bailly, A.7    Benecke, A.8    Tronche, F.9
  • 27
    • 77951679654 scopus 로고    scopus 로고
    • Quality assessment of transcriptome data using intrinsic statistical properties
    • Brysbaert G, Pellay FX, Noth S, Benecke A. Quality assessment of transcriptome data using intrinsic statistical properties. Genomics Proteomics Bioinf January 2010, 8(1):57-71.
    • (2010) Genomics Proteomics Bioinf , vol.8 , Issue.1 , pp. 57-71
    • Brysbaert, G.1    Pellay, F.X.2    Noth, S.3    Benecke, A.4
  • 28
    • 34248664998 scopus 로고    scopus 로고
    • High-sensitivity transcriptome data structure and implications for analysis and biologic interpretation
    • Noth S, Brysbaert G, Pellay F-X, Benecke A. High-sensitivity transcriptome data structure and implications for analysis and biologic interpretation. Genomics Proteomics Bioinf 2006, 4:212-29.
    • (2006) Genomics Proteomics Bioinf , vol.4 , pp. 212-229
    • Noth, S.1    Brysbaert, G.2    Pellay, F.-X.3    Benecke, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.