Expression, purification, and reconstitution of a diatom silicon transporter

Biochemistry

Volumn 51, Issue 18, 2012, Pages 3776-3785

  Curnow, Paul ^a   Senior, Laura ^a   Knight, Michael J ^a   Thamatrakoln, Kimberlee ^b   Hildebrand, Mark ^c   Booth, Paula J ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

^b RUTGERS UNIVERSITY   (United States)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BEST FIT; CELL WALLS; CIRCULAR DICHROISM MEASUREMENTS; COOPERATIVITY; DIFFERENT SUBSTRATES; HELICAL MEMBRANE; HILL EQUATION; HOMOTETRAMERS; IN-VITRO; INTEGRAL MEMBRANE PROTEINS; NANO SCALE; NANOTECHNOLOGY RESEARCH; NATURAL WORLD; PARTICLE SIZING; PROTEIN CONCENTRATIONS; PROTEOLIPOSOMES; PURIFICATION PROTOCOL; RECOMBINANT EXPRESSION; SILICA STRUCTURES; SILICIC ACIDS; SILICON BIOMINERALIZATION; SILICON MATERIALS; SODIUM BINDING; THALASSIOSIRA PSEUDONANA; TRANSPORT DATA; TRANSPORT PROTEINS; UNICELLULAR ALGA;

AFFINITY CHROMATOGRAPHY; BIOMINERALIZATION; CELL MEMBRANES; CYTOLOGY; NANOTECHNOLOGY; OLIGOMERIZATION; OLIGOMERS; PHYTOPLANKTON; PURIFICATION; SILICA; SIZE EXCLUSION CHROMATOGRAPHY; SODIUM; STOICHIOMETRY; YEAST;

PROTEINS;

GALACTOSE; GREEN FLUORESCENT PROTEIN; MEMBRANE PROTEIN; PHOSPHOLIPID; PROTEIN FOS; PROTEOLIPOSOME; SILICIC ACID; SILICON;

AFFINITY CHROMATOGRAPHY; ARTICLE; BINDING SITE; BIOMINERALIZATION; CELL TRANSPORT; CELL WALL; CIRCULAR DICHROISM; CROSS REACTION; DIATOM; GENE EXPRESSION; IN VITRO STUDY; NONHUMAN; PARTICLE SIZE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN INTERACTION; PROTEIN PURIFICATION; SACCHAROMYCES CEREVISIAE; SOLUBILIZATION;

BIOLOGICAL TRANSPORT; CELL WALL; DETERGENTS; DIATOMS; MEMBRANE TRANSPORT PROTEINS; NANOTECHNOLOGY; PROTEOLIPIDS; RECOMBINANT PROTEINS; SILICIC ACID; SILICON; SOLUBILITY;

ALGAE; BACILLARIOPHYTA; SACCHAROMYCES CEREVISIAE; THALASSIOSIRA PSEUDONANA;

EID: 84860783748     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi3000484     Document Type: Article

References (48)

1. Schröder, H. C., Wang, X., Tremel, W., Ushijima, H., and Müller, W. E. G. (2008) Biofabrication of biosilica-glass by living organisms Nat. Prod. Rep. 25, 455-474 (Pubitemid 351725316)
2. Field, C. B., Behrenfeld, M. J., Randerson, J. T., and Falkowski, P. (1998) Primary production of the biosphere: Integrating terrestrial and oceanic components Science 281, 237-240 (Pubitemid 28334501)
3. Treguer, P., Nelson, D. M., van Bennekom, A. J., DeMaster, D. J., Leynaert, A., and Queguiner, B. (1995) The silica balance in the world ocean: A reestimate Science 268, 375-379
4. Bradbury, J. (2004) Nature's nanotechnologists: Unveiling the secrets of diatoms PLoS Biol. 2, 1512-1515
5. Gordon, R., Losic, D., Tiffany, M. A., Nagy, S. S., and Sterrenburg, F. A. S. (2009) The glass menagerie: Diatoms for novel applications in nanotechnology Trends Biotechnol. 27, 116-127
6. Kroger, N. (2007) Prescribing diatom morphology: Toward genetic engineering of biological nanomaterials Curr. Opin. Chem. Biol. 11, 662-669 (Pubitemid 350180579)
7. Lopez, P. J., Descles, J., Allen, A. E., and Bowler, C. (2005) Prospects in diatom research Curr. Opin. Biotechnol. 16, 180-186
8. Kroger, N. and Poulsen, N. (2008) Diatoms: From cell wall biogenesis to nanotechnology Annu. Rev. Genet. 42, 83-107
9. Brunner, E., Gröger, C., Lutz, K., Richthammer, P., Spinde, K., and Sumper, M. (2009) Analytical studies of silica biomineralization: Towards an understanding of silica processing by diatoms Appl. Microbiol. Biotechnol. 84, 607-616
10. Kroger, N., Deutzmann, R., and Sumper, M. (1999) Polycationic peptides from diatom biosilica that direct silica nanosphere formation Science 286, 1129-1132
11. Kroger, N., Deutzmann, R., Bergsdorf, C., and Sumper, M. (2000) Species-specific polyamines from diatoms control silica morphology Proc. Natl. Acad. Sci. U.S.A. 97, 14133-14138 (Pubitemid 32016542)
12. Tesson, B. and Hildebrand, M. (2010) Extensive and intimate association of the cytoskeleton with forming silica in diatoms: Control over patterning on the meso- and micro-scale PloS One 5, e14300
13. Hildebrand, M. (2008) Diatoms, biomineralization processes, and genomics Chem. Rev. 108, 4855-4874
14. Thamatrakoln, K. and Kustka, A. B. (2009) When to say when: Can excessive drinking explain silicon uptake in diatoms? BioEssays 31, 322-327
15. Vrieling, E. G., Sun, Q., Tian, M., Kooyman, P. J., Gieskes, W. W. C., van Santen, R. A., and Sommerdijk, N. A. J. M. (2007) Salinity-dependent diatom biosilicification implies an important role of external ionic strength Proc. Natl. Acad. Sci. U.S.A. 104, 10441-10446 (Pubitemid 47185684)
16. Hildebrand, M., Volcani, B. E., Gassmann, W., and Schroeder, J. I. (1997) A gene family of silicon transporters Nature 385, 688-689
17. Mock, T., Samanta, M. P., Iverson, V., Berthiaume, C., Robison, M., Holtermann, K., Durkin, C., BonDurant, S. S., Richmond, K., Rodesch, M., Kallas, T., Huttlin, E. L., Cerrina, F., Sussman, M. R., and Armbrust, E. V. (2008) Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon biogenesis Proc. Natl. Acad. Sci. U.S.A. 105, 1579-1584 (Pubitemid 351346557)
18. Sapriel, G., Quinet, M., Heijde, M., Jourdren, L., Tanty, V., Luo, G., le Crom, S., and Jean Lopez, P. (2009) Genome-wide transcriptome analyses of silicon metabolsim in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters PloS One 4, e7458
19. Bhattacharya, P. and Volcani, B. E. (1980) Sodium-dependent silicate transport in the apochlorotic marine diatom Nitzschia alba Proc. Natl. Acad. Sci. U.S.A. 77, 6386-6390
20. Thamatrakoln, K. and Hildebrand, M. (2008) Silicon uptake in diatoms revisited: A model for saturable and non-saturable uptake kinetics and the role of silicon transporters Plant Physiol. 146, 1397-1407 (Pubitemid 352844143)
21. Martin-Jezequel, V., Hildebrand, M., and Brzezinski, M. A. (2000) Silicon metabolism in diatoms: Implications for growth J. Phycol. 36, 821-840
22. Del Amo, Y. and Brzezinski, M. A. (1999) The chemical form of dissolved Si taken up by marine diatoms J. Phycol. 35, 1162-1170 (Pubitemid 30059322)
23. Thamatrakoln, K., Alverson, A. J., and Hildebrand, M. (2006) Comparative sequence analysis of diatom silicon transporters: Towards a mechanistic model of silicon transport J. Phycol. 42, 822-834 (Pubitemid 44126591)
24. Grachev, M. A., Annenkov, V. V., and Likhoshway, Y. V. (2008) Silicon nanotechnologies of pigmented heterokonts BioEssays 30, 328-337 (Pubitemid 351482330)
25. Ma, J. F., Tamai, K., Yamaji, N., Mitani, N., Konishi, S., Katsuhara, M., Ishiguro, M., Murata, Y., and Yano, M. (2006) A silicon transporter in rice Nature 440, 688-691
26. Ma, J. F., Yamaji, N., Mitani, N., Tamai, K., Konishi, S., Fujiwara, T., Katsuhara, M., and Yano, M. (2007) An efflux transporter of silicon in rice Nature 448, 209-212 (Pubitemid 47067377)
27. Mitani, N., Chiba, Y., Yamaji, N., and Ma, J. F. (2009) Identification and characterization of maize and barley Lsi2-like silicon efflux transporters reveals a distinct silicon uptake system from that in rice Plant Cell 21, 2133-2142
28. Chiba, Y., Mitani, N., Yamaji, N., and Ma, J. F. (2009) HvLsi1 is a silicon influx transporter in barley Plant J. 57, 810-818
29. Mitani, N., Yamaji, N., and Ma, J. F. (2009) Identification of maize silicon influx transporters Plant Cell Physiol. 50, 5-12
30. Thamatrakoln, K. and Hildebrand, M. (2007) Analysis of Thalassiosira pseudonana silicon transporters indicates distinct regulatory levels and transport activity through the cell cycle Eukaryotic Cell 6, 271-279
31. Bessette, P. H. and Daugherty, P. S. (2004) Flow cytometric screening of cDNA expression libraries for fluorescent proteins Biotechnol. Prog. 20, 963-967 (Pubitemid 38784038)
32. Kota, J., Gilstring, C. F., and Ljungdahl, P. O. (2007) Membrane chaperone Shr3 assists in folding amino acid permeases preventing precocious ERAD J. Cell Biol. 176, 617-628 (Pubitemid 46333977)
33. Li, M., Hays, F. A., Roe-Zurz, Z., Vuong, L., Kelly, L., Ho, C. M., Robbins, R. M., Pieper, U., O'Connell, J. D., III, Miercke, L. J. W., Giacomini, K. M., Sali, A., and Stroud, R. M. (2009) Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening J. Mol. Biol. 385, 820-830
34. Newstead, S., Kim, H., von Heijne, G., Iwata, S., and Drew, D. (2007) High-throughput fluorescent-based optimization of eukaryotic membrane protein overexpression in Saccharomyces cerevisiae Proc. Natl. Acad. Sci. U.S.A. 104, 13936-13941 (Pubitemid 350003316)
35. MacRaild, C. A., Hatters, D. M., Howlett, G. J., and Gooley, P. R. (2001) NMR structure of human apolipoprotein C-II in the presence of sodium dodecyl sulfate Biochemistry 40, 5414-5421 (Pubitemid 32458242)
36. Morrow, J. A., Segall, M. L., Lund-Katz, S., Phillips, M. C., Knapp, M., Rupp, B., and Weisgraber, K. H. (2000) Differences in stability among the human apolipoprotein E isoforms determined by the amino-terminal domain Biochemistry 39, 11657-11666
37. Rubenstein, J. L. (2007) Structural analysis of membrane protein complexes by single particle electron microscopy Methods 41, 409-416
38. Strickland, J. D. H. and Parsons, T. R. (1965) A manual of seawater analysis Bull.-Fish. Res. Board Can. 125, 203
39. Kawate, T. and Gouaux, E. (2006) Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins Structure 14, 673-681
40. Rigaud, J. L. and Levy, D. (2003) Reconstitution of membrane proteins into liposomes Methods Enzymol. 372, 65-86 (Pubitemid 37337801)
41. Abramoff, M. D., Magalhaes, P. J., and Ram, S. J. (2004) Image processing with ImageJ Biophotonics Int. 11, 36-42
42. Nelson, D. M., Treguer, P., Brzezinski, M. A., Leynaert, A., and Quéguiner, B. (1995) Production and dissolution of biogenic silica in the ocean: Revised global estimates, comparison with regional data and relationship to biogenic sedimentation Global Biogeochem. Cycles 9, 359-372 (Pubitemid 26439874)
43. 2-. A precision study at 25 °C in a simplified seawater medium Mar. Chem. 10, 521-532
44. Ma, J. F. and Yamaji, N. (2006) Silicon uptake and accumulation in higher plants Trends Plant Sci. 11, 1360-1385
45. Jugdaohsingh, R. (2007) Silicon and bone health J. Nutr., Health Aging 11, 99-110 (Pubitemid 46725286)
46. Ma, J. F. and Yamaji, N. (2008) Functions and transport of silicon in plants Cell. Mol. Life Sci. 65, 3049-3057
47. Grinius, L. L. and Goldberg, E. B. (1994) Bacterial multidrug resistance is due to a single membrane protein which functions as a drug pump J. Biol. Chem. 269, 29998-30004 (Pubitemid 24365171)
48. Levy, S., Kafri, M., Carmi, M., and Barkai, N. (2011) The competetive advantage of a dual-transporter system Science 334, 1408-1412