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Volumn 501, Issue 2, 2012, Pages 198-205

Cloning and expression of porcine Dicer and the impact of developmental stage and culture conditions on MicroRNA expression in porcine embryos

Author keywords

Blastocyst; CDNA; Dicer1; MiRNA; Ovary; Pigs

Indexed keywords

COMPLEMENTARY DNA; DICER; MICRORNA; MICRORNA 18A; MICRORNA 21; MICRORNA 24; UNCLASSIFIED DRUG;

EID: 84860710882     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.03.058     Document Type: Article
Times cited : (33)

References (50)
  • 1
    • 0030954826 scopus 로고    scopus 로고
    • Fertilization and subsequent development IVF of pig oocytes inseminated in a modified tris-buffered medium with frozen-thawed ejaculated spermatozoa
    • Abeydeera L.R., Day B.N. Fertilization and subsequent development IVF of pig oocytes inseminated in a modified tris-buffered medium with frozen-thawed ejaculated spermatozoa. Biol. Reprod. 1997, 57(4):729-734.
    • (1997) Biol. Reprod. , vol.57 , Issue.4 , pp. 729-734
    • Abeydeera, L.R.1    Day, B.N.2
  • 2
    • 0031418912 scopus 로고    scopus 로고
    • IVF penetration of pig oocytes in a modified Tris-buffered medium: effect of BSA, caffeine and calcium
    • Abeydeera L.R., Day B.N. IVF penetration of pig oocytes in a modified Tris-buffered medium: effect of BSA, caffeine and calcium. Theriogenology 1997, 48(4):537-544.
    • (1997) Theriogenology , vol.48 , Issue.4 , pp. 537-544
    • Abeydeera, L.R.1    Day, B.N.2
  • 3
    • 0031977940 scopus 로고    scopus 로고
    • Maturation IVF of pig oocytes in protein-free culture media: fertilization and subsequent embryo development IVF
    • Abeydeera L.R., Wang W.H., Prather R.S., Day B.N. Maturation IVF of pig oocytes in protein-free culture media: fertilization and subsequent embryo development IVF. Biol. Reprod. 1998, 58(5):1316-1320.
    • (1998) Biol. Reprod. , vol.58 , Issue.5 , pp. 1316-1320
    • Abeydeera, L.R.1    Wang, W.H.2    Prather, R.S.3    Day, B.N.4
  • 4
    • 0034664881 scopus 로고    scopus 로고
    • Development and viability of pig oocytes matured in a protein-free medium containing epidermal growth factor
    • Abeydeera L.R., et al. Development and viability of pig oocytes matured in a protein-free medium containing epidermal growth factor. Theriogenology 2000, 54(5):787-797.
    • (2000) Theriogenology , vol.54 , Issue.5 , pp. 787-797
    • Abeydeera, L.R.1
  • 5
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., Orntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64(15):5245-5250.
    • (2004) Cancer Res. , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 6
    • 23944514849 scopus 로고    scopus 로고
    • Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
    • Bagga S., et al. Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 2005, 122(4):553-563.
    • (2005) Cell , vol.122 , Issue.4 , pp. 553-563
    • Bagga, S.1
  • 7
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein E., Caudy A.A., Hammond S.M., Hannon G.J. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 2001, 409(6818):363-366.
    • (2001) Nature , vol.409 , Issue.6818 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 8
    • 0242266620 scopus 로고    scopus 로고
    • Dicer is essential for mouse development
    • Bernstein E., et al. Dicer is essential for mouse development. Nat. Genet. 2003, 35(3):215-217.
    • (2003) Nat. Genet. , vol.35 , Issue.3 , pp. 215-217
    • Bernstein, E.1
  • 9
    • 0037398368 scopus 로고    scopus 로고
    • LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
    • Brudno M., et al. LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res. 2003, 13(4):721-731.
    • (2003) Genome Res. , vol.13 , Issue.4 , pp. 721-731
    • Brudno, M.1
  • 10
    • 36749013633 scopus 로고    scopus 로고
    • RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    • Calabrese J.M., Seila A.C., Yeo G.W., Sharp P.A. RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. Proc. Natl. Acad. Sci. U.S.A. 2007, 104(46):18097-18102.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , Issue.46 , pp. 18097-18102
    • Calabrese, J.M.1    Seila, A.C.2    Yeo, G.W.3    Sharp, P.A.4
  • 11
    • 34250682267 scopus 로고    scopus 로고
    • Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes
    • Chen K., Rajewsky N. Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes. Cold Spring Harb. Symp. Quant. Biol. 2006, 71:149-156.
    • (2006) Cold Spring Harb. Symp. Quant. Biol. , vol.71 , pp. 149-156
    • Chen, K.1    Rajewsky, N.2
  • 12
    • 70349671437 scopus 로고    scopus 로고
    • Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis
    • Chen Y., Gelfond J.A., McManus L.M., Shireman P.K. Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis. BMC Genomics 2009, 10:407.
    • (2009) BMC Genomics , vol.10 , pp. 407
    • Chen, Y.1    Gelfond, J.A.2    McManus, L.M.3    Shireman, P.K.4
  • 13
    • 29644432901 scopus 로고    scopus 로고
    • MicroRNAs and endocrine biology
    • Cuellar T.L., McManus M.T. MicroRNAs and endocrine biology. J. Endocrinol. 2005, 187(3):327-332.
    • (2005) J. Endocrinol. , vol.187 , Issue.3 , pp. 327-332
    • Cuellar, T.L.1    McManus, M.T.2
  • 14
    • 61449134042 scopus 로고    scopus 로고
    • Detection of porcine sperm microRNAs using a heterologous microRNA microarray and reverse transcriptase polymerase chain reaction
    • Curry E., Ellis S.E., Pratt S.L. Detection of porcine sperm microRNAs using a heterologous microRNA microarray and reverse transcriptase polymerase chain reaction. Mol. Reprod. Dev. 2009, 76(3):218-219.
    • (2009) Mol. Reprod. Dev. , vol.76 , Issue.3 , pp. 218-219
    • Curry, E.1    Ellis, S.E.2    Pratt, S.L.3
  • 15
    • 80053576391 scopus 로고    scopus 로고
    • Differential expression of porcine sperm microRNAs and their association with sperm morphology and motility
    • Curry E., Safranski T.J., Pratt S.L. Differential expression of porcine sperm microRNAs and their association with sperm morphology and motility. Theriogenology 2011, 76(8):1532-1539.
    • (2011) Theriogenology , vol.76 , Issue.8 , pp. 1532-1539
    • Curry, E.1    Safranski, T.J.2    Pratt, S.L.3
  • 16
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for Annotation, Visualization, and Integrated Discovery
    • Dennis G., et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 2003, 4(5):P3.
    • (2003) Genome Biol. , vol.4 , Issue.5
    • Dennis, G.1
  • 18
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman R.C., Farh K.K., Burge C.B., Bartel D.P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 2009, 19(1):92-105.
    • (2009) Genome Res. , vol.19 , Issue.1 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 19
    • 0033972429 scopus 로고    scopus 로고
    • A single medium supports development of bovine embryos throughout maturation, fertilization and culture
    • Gandhi A.P., Lane M., Gardner D.K., Krisher R.L. A single medium supports development of bovine embryos throughout maturation, fertilization and culture. Hum. Reprod. 2000, 15(2):395-401.
    • (2000) Hum. Reprod. , vol.15 , Issue.2 , pp. 395-401
    • Gandhi, A.P.1    Lane, M.2    Gardner, D.K.3    Krisher, R.L.4
  • 20
    • 33645124258 scopus 로고    scopus 로고
    • Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
    • Giraldez A.J., et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 2006, 312(5770):75-79.
    • (2006) Science , vol.312 , Issue.5770 , pp. 75-79
    • Giraldez, A.J.1
  • 21
    • 45549087643 scopus 로고    scopus 로고
    • Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    • He X.F., Fang Y.Y., Feng L., Guo H.S. Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica. FEBS Lett. 2008, 582(16):2445-2452.
    • (2008) FEBS Lett. , vol.582 , Issue.16 , pp. 2445-2452
    • He, X.F.1    Fang, Y.Y.2    Feng, L.3    Guo, H.S.4
  • 22
    • 0042442335 scopus 로고    scopus 로고
    • Embryonic stem cell-specific MicroRNAs
    • Houbaviy H.B., Murray M.F., Sharp P.A. Embryonic stem cell-specific MicroRNAs. Dev. Cell 2003, 5(2):351-358.
    • (2003) Dev. Cell , vol.5 , Issue.2 , pp. 351-358
    • Houbaviy, H.B.1    Murray, M.F.2    Sharp, P.A.3
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4(1):44-57.
    • (2009) Nat. Protoc. , vol.4 , Issue.1 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 25
    • 0035887005 scopus 로고    scopus 로고
    • Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
    • Ketting R.F., Fischer S.E., Bernstein E., Sijen T., Hannon G.J., Plasterk R.H. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev. 2001, 15(20):2654-2659.
    • (2001) Genes Dev. , vol.15 , Issue.20 , pp. 2654-2659
    • Ketting, R.F.1    Fischer, S.E.2    Bernstein, E.3    Sijen, T.4    Hannon, G.J.5    Plasterk, R.H.6
  • 26
    • 34250899284 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos
    • Kuijk E.W., du Puy L., van Tol H.T., Haagsman H.P., Colenbrander B., Roelen B.A. Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos. BMC Dev. Biol. 2007, 7:58.
    • (2007) BMC Dev. Biol. , vol.7 , pp. 58
    • Kuijk, E.W.1    du Puy, L.2    van Tol, H.T.3    Haagsman, H.P.4    Colenbrander, B.5    Roelen, B.A.6
  • 28
    • 27744590896 scopus 로고    scopus 로고
    • Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes
    • Matranga C., Tomari Y., Shin C., Bartel D.P., Zamore P.D. Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell 2005, 123(4):607-620.
    • (2005) Cell , vol.123 , Issue.4 , pp. 607-620
    • Matranga, C.1    Tomari, Y.2    Shin, C.3    Bartel, D.P.4    Zamore, P.D.5
  • 29
    • 68149166716 scopus 로고    scopus 로고
    • Application of genetically modified and cloned pigs in translational research
    • Matsunari H., Nagashima H. Application of genetically modified and cloned pigs in translational research. J. Reprod. Dev. 2009, 55(3):225-230.
    • (2009) J. Reprod. Dev. , vol.55 , Issue.3 , pp. 225-230
    • Matsunari, H.1    Nagashima, H.2
  • 30
    • 0034518158 scopus 로고    scopus 로고
    • VISTA : visualizing global DNA sequence alignments of arbitrary length
    • Mayor C., et al. VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 2000, 16(11):1046-1047.
    • (2000) Bioinformatics , vol.16 , Issue.11 , pp. 1046-1047
    • Mayor, C.1
  • 31
    • 77951720098 scopus 로고    scopus 로고
    • Multiplex preamplification of specific cDNA targets prior to gene expression analysis by TaqMan Arrays
    • Mengual L., Burset M., Marin-Aguilera M., Ribal M.J., Alcaraz A. Multiplex preamplification of specific cDNA targets prior to gene expression analysis by TaqMan Arrays. BMC Res. Notes 2008, 1:21.
    • (2008) BMC Res. Notes , vol.1 , pp. 21
    • Mengual, L.1    Burset, M.2    Marin-Aguilera, M.3    Ribal, M.J.4    Alcaraz, A.5
  • 32
    • 57149110022 scopus 로고    scopus 로고
    • High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA
    • Mestdagh P., et al. High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA. Nucleic Acids Res. 2008, 36(21):e143.
    • (2008) Nucleic Acids Res. , vol.36 , Issue.21
    • Mestdagh, P.1
  • 33
    • 67649729608 scopus 로고    scopus 로고
    • A novel and universal method for microRNA RT-qPCR data normalization
    • Mestdagh P., et al. A novel and universal method for microRNA RT-qPCR data normalization. Genome Biol. 2009, 10(6):R64.
    • (2009) Genome Biol. , vol.10 , Issue.6
    • Mestdagh, P.1
  • 34
    • 33645808233 scopus 로고    scopus 로고
    • The expression profile of microRNAs in mouse embryos
    • Mineno J., et al. The expression profile of microRNAs in mouse embryos. Nucleic Acids Res. 2006, 34(6):1765-1771.
    • (2006) Nucleic Acids Res. , vol.34 , Issue.6 , pp. 1765-1771
    • Mineno, J.1
  • 35
    • 33947306584 scopus 로고    scopus 로고
    • Critical roles for Dicer in the female germline
    • Murchison E.P., et al. Critical roles for Dicer in the female germline. Genes Dev. 2007, 21(6):682-693.
    • (2007) Genes Dev. , vol.21 , Issue.6 , pp. 682-693
    • Murchison, E.P.1
  • 39
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations
    • Pfaffl M.W., Tichopad A., Prgomet C., Neuvians T.P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol. Lett. 2004, 26(6):509-515.
    • (2004) Biotechnol. Lett. , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 42
    • 53049106916 scopus 로고    scopus 로고
    • PCR primer design and reaction optimisation
    • Innis, V.E. Coyne, M.D. James, S.J. Reid, E.P. Rybicki (Eds.)
    • Rybicki E.P. PCR primer design and reaction optimisation. Molecular Biology Techniques Manual 2001, 39-45. Innis. V.E. Coyne, M.D. James, S.J. Reid, E.P. Rybicki (Eds.).
    • (2001) Molecular Biology Techniques Manual , pp. 39-45
    • Rybicki, E.P.1
  • 43
    • 2342558556 scopus 로고    scopus 로고
    • Fertilization and blastocyst development in oocytes obtained from prepubertal and adult pigs
    • Sherrer E.S., Rathbun T.J., Davis D.L. Fertilization and blastocyst development in oocytes obtained from prepubertal and adult pigs. J. Anim. Sci. 2004, 82(1):102-108.
    • (2004) J. Anim. Sci. , vol.82 , Issue.1 , pp. 102-108
    • Sherrer, E.S.1    Rathbun, T.J.2    Davis, D.L.3
  • 44
    • 33947327049 scopus 로고    scopus 로고
    • Maternal microRNAs are essential for mouse zygotic development
    • Tang F., et al. Maternal microRNAs are essential for mouse zygotic development. Genes Dev. 2007, 21(6):644-648.
    • (2007) Genes Dev. , vol.21 , Issue.6 , pp. 644-648
    • Tang, F.1
  • 45
    • 36249010340 scopus 로고    scopus 로고
    • MiRRim: a novel system to find conserved miRNAs with high sensitivity and specificity
    • Terai G., Komori T., Asai K., Kin T. miRRim: a novel system to find conserved miRNAs with high sensitivity and specificity. RNA 2007, 13(12):2081-2090.
    • (2007) RNA , vol.13 , Issue.12 , pp. 2081-2090
    • Terai, G.1    Komori, T.2    Asai, K.3    Kin, T.4
  • 47
    • 67449100822 scopus 로고    scopus 로고
    • Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    • Tesfaye D., et al. Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach. Mol. Reprod. Dev. 2009, 76(7):665-677.
    • (2009) Mol. Reprod. Dev. , vol.76 , Issue.7 , pp. 665-677
    • Tesfaye, D.1
  • 48
    • 77954861312 scopus 로고    scopus 로고
    • Cloning and analysis of fetal ovary microRNAs in cattle
    • Tripurani S.K., Xiao C., Salem M., Yao J. Cloning and analysis of fetal ovary microRNAs in cattle. Anim. Reprod. Sci. 2010, 120(1-4):16-22.
    • (2010) Anim. Reprod. Sci. , vol.120 , Issue.1-4 , pp. 16-22
    • Tripurani, S.K.1    Xiao, C.2    Salem, M.3    Yao, J.4
  • 49
    • 11844283981 scopus 로고    scopus 로고
    • Stage-specific expression of microRNAs during Xenopus development
    • Watanabe T., et al. Stage-specific expression of microRNAs during Xenopus development. FEBS Lett. 2005, 579(2):318-324.
    • (2005) FEBS Lett. , vol.579 , Issue.2 , pp. 318-324
    • Watanabe, T.1
  • 50
    • 80054732035 scopus 로고    scopus 로고
    • Genetic modifications of pigs for medicine and agriculture
    • Whyte J.J., Prather R.S. Genetic modifications of pigs for medicine and agriculture. Mol. Reprod. Dev. 2011, 78(10-11):879-891.
    • (2011) Mol. Reprod. Dev. , vol.78 , Issue.10-11 , pp. 879-891
    • Whyte, J.J.1    Prather, R.S.2


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