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Volumn 45, Issue 6, 2012, Pages 530-541

Ecology of the microbiome of the infected root canal system: A comparison between apical and coronal root segments

Author keywords

Apical; Apical periodontitis; Coronal; Cryo pulverization; Microbiome; Pyrosequencing

Indexed keywords

BACTERIAL RNA; RIBOSOME DNA; RNA 16S;

EID: 84860662929     PISSN: 01432885     EISSN: 13652591     Source Type: Journal    
DOI: 10.1111/j.1365-2591.2011.02006.x     Document Type: Article
Times cited : (92)

References (46)
  • 1
    • 4043052860 scopus 로고    scopus 로고
    • Cultivable microbial flora associated with persistent periapical disease and coronal leakage after root canal treatment: a preliminary study
    • Adib V, Spratt D, Ng Y-l, Gulabivala K (2004) Cultivable microbial flora associated with persistent periapical disease and coronal leakage after root canal treatment: a preliminary study. International Endodontic Journal 37, 542-51.
    • (2004) International Endodontic Journal , vol.37 , pp. 542-551
    • Adib, V.1    Spratt, D.2    Ng, Y.-l.3    Gulabivala, K.4
  • 2
    • 0017223927 scopus 로고
    • Effect of endodontic procedures on the population of viable microorganisms in the infected root canal
    • Akpata E (1976) Effect of endodontic procedures on the population of viable microorganisms in the infected root canal. Journal of Endodontics 2, 369-73.
    • (1976) Journal of Endodontics , vol.2 , pp. 369-373
    • Akpata, E.1
  • 3
    • 63449131699 scopus 로고    scopus 로고
    • Bacterial community profiling of cryogenically ground samples from the apical and coronal root segments of teeth with apical periodontitis
    • Alves FR, Siqueira JFJ, Carmo FL et al. (2009) Bacterial community profiling of cryogenically ground samples from the apical and coronal root segments of teeth with apical periodontitis. Journal of Endodontics 35, 486-92.
    • (2009) Journal of Endodontics , vol.35 , pp. 486-492
    • Alves, F.R.1    Siqueira, J.F.J.2    Carmo, F.L.3
  • 4
    • 0034570487 scopus 로고    scopus 로고
    • Occurrence of Candida albicans in infections of endodontic origin
    • Baumgartner JC, Watts CM, Xia T (2000) Occurrence of Candida albicans in infections of endodontic origin. Journal of Endodontics 26, 695-8.
    • (2000) Journal of Endodontics , vol.26 , pp. 695-698
    • Baumgartner, J.C.1    Watts, C.M.2    Xia, T.3
  • 6
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7, 335-6.
    • (2010) Nature Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 7
    • 13444304367 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
    • Cole J, Chai B, Farris R et al. (2005) The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Research 33, D294-6.
    • (2005) Nucleic Acids Research , vol.33
    • Cole, J.1    Chai, B.2    Farris, R.3
  • 8
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-1.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 9
    • 0026099805 scopus 로고
    • Susceptibility of Pseudomonas aeruginosa and Escherichia coli biofilms towards ciprofloxacin: effect of specific growth rate
    • Evans DJ, Allison DG, Brown MR, Gilbert P (1991) Susceptibility of Pseudomonas aeruginosa and Escherichia coli biofilms towards ciprofloxacin: effect of specific growth rate. Journal of Antimicrobial Chemotherapy 27, 177-84.
    • (1991) Journal of Antimicrobial Chemotherapy , vol.27 , pp. 177-184
    • Evans, D.J.1    Allison, D.G.2    Brown, M.R.3    Gilbert, P.4
  • 10
    • 77649230349 scopus 로고    scopus 로고
    • Characterization of the oral fungal microbiome (mycobiome) in healthy individuals
    • Ghannoum MA, Jurevic RJ, Mukherjee PK et al. (2010) Characterization of the oral fungal microbiome (mycobiome) in healthy individuals. PLoS Pathogens 6, e1000713.
    • (2010) PLoS Pathogens , vol.6
    • Ghannoum, M.A.1    Jurevic, R.J.2    Mukherjee, P.K.3
  • 11
    • 34748886657 scopus 로고    scopus 로고
    • PAST: paleontological statistics software package for education and data analysis
    • Hammer O, Harper D, Ryan P (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4, 1-9.
    • (2001) Palaeontologia Electronica , vol.4 , pp. 1-9
    • Hammer, O.1    Harper, D.2    Ryan, P.3
  • 12
    • 77957689489 scopus 로고    scopus 로고
    • Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
    • He S, Wurtzel O, Singh K et al. (2010) Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nature Methods 7, 807-12.
    • (2010) Nature Methods , vol.7 , pp. 807-812
    • He, S.1    Wurtzel, O.2    Singh, K.3
  • 16
    • 0034601511 scopus 로고    scopus 로고
    • Diversity peaks at intermediate productivity in a laboratory microcosm
    • Kassen R, Buckling A, Bell G, Rainey PB (2000) Diversity peaks at intermediate productivity in a laboratory microcosm. Nature 406, 508-12.
    • (2000) Nature , vol.406 , pp. 508-512
    • Kassen, R.1    Buckling, A.2    Bell, G.3    Rainey, P.B.4
  • 17
    • 34247644455 scopus 로고    scopus 로고
    • Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth
    • Keijser B, ter Beek A, Rauwerda H et al. (2007) Analysis of temporal gene expression during Bacillus subtilis spore germination and outgrowth. Journal of Bacteriology 189, 3624-34.
    • (2007) Journal of Bacteriology , vol.189 , pp. 3624-3634
    • Keijser, B.1    ter Beek, A.2    Rauwerda, H.3
  • 18
    • 58149218590 scopus 로고    scopus 로고
    • Pyrosequencing analysis of the oral microflora of healthy adults
    • Keijser BJ, Zaura E, Huse SM et al. (2008) Pyrosequencing analysis of the oral microflora of healthy adults. Journal of Dental Research 87, 1016-20.
    • (2008) Journal of Dental Research , vol.87 , pp. 1016-1020
    • Keijser, B.J.1    Zaura, E.2    Huse, S.M.3
  • 19
    • 4444233112 scopus 로고    scopus 로고
    • Biofilms promote altruism
    • Kreft JU (2004) Biofilms promote altruism. Microbiology 150, 2751-60.
    • (2004) Microbiology , vol.150 , pp. 2751-2760
    • Kreft, J.U.1
  • 20
    • 77956046535 scopus 로고    scopus 로고
    • Analyzing endodontic infections by deep coverage pyrosequencing
    • Li L, Hsiao W, Nandakumar R et al. (2010) Analyzing endodontic infections by deep coverage pyrosequencing. Journal of Dental Research 89, 980-4.
    • (2010) Journal of Dental Research , vol.89 , pp. 980-984
    • Li, L.1    Hsiao, W.2    Nandakumar, R.3
  • 21
    • 79960080971 scopus 로고    scopus 로고
    • Live/dead real-time polymerase chain reaction to assess new therapies against dental plaque-related pathologies
    • Loozen G, Boon N, Pauwels M, Quirynen M, Teughels W (2011) Live/dead real-time polymerase chain reaction to assess new therapies against dental plaque-related pathologies. Molecular Oral Microbiology 26, 253-61.
    • (2011) Molecular Oral Microbiology , vol.26 , pp. 253-261
    • Loozen, G.1    Boon, N.2    Pauwels, M.3    Quirynen, M.4    Teughels, W.5
  • 22
    • 33947269742 scopus 로고    scopus 로고
    • Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
    • Lozupone CA, Hamady M, Kelley ST, Knight R (2007) Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Applied and Environmental Microbiology 73, 1576-85.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 1576-1585
    • Lozupone, C.A.1    Hamady, M.2    Kelley, S.T.3    Knight, R.4
  • 23
    • 0035014383 scopus 로고    scopus 로고
    • Mechanisms of biofilm resistance to antimicrobial agents
    • Mah TF, O'Toole GA (2001) Mechanisms of biofilm resistance to antimicrobial agents. Trends in Microbiology 9, 34-9.
    • (2001) Trends in Microbiology , vol.9 , pp. 34-39
    • Mah, T.F.1    O'Toole, G.A.2
  • 25
    • 0036828242 scopus 로고    scopus 로고
    • Molecular and cultural analysis of the microflora associated with endodontic infections
    • Munson M, Pitt-Ford T, Chong B, Weightman A, Wade W (2002) Molecular and cultural analysis of the microflora associated with endodontic infections. Journal of Dental Research 81, 761-6.
    • (2002) Journal of Dental Research , vol.81 , pp. 761-766
    • Munson, M.1    Pitt-Ford, T.2    Chong, B.3    Weightman, A.4    Wade, W.5
  • 26
    • 0030036446 scopus 로고    scopus 로고
    • Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Murray AE, Hollibaugh JT, Orrego C (1996) Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Applied and Environmental Microbiology 62, 2676-80.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 2676-2680
    • Murray, A.E.1    Hollibaugh, J.T.2    Orrego, C.3
  • 27
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59, 695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 28
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Nadkarni MA, Martin FE, Jacques NA, Hunter N (2002) Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 148, 257-66.
    • (2002) Microbiology , vol.148 , pp. 257-266
    • Nadkarni, M.A.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 29
    • 67149125596 scopus 로고    scopus 로고
    • Methods for optimizing DNA extraction before quantifying oral bacterial numbers by real-time PCR
    • Nadkarni M, Martin F, Hunter N, Jacques N (2009) Methods for optimizing DNA extraction before quantifying oral bacterial numbers by real-time PCR. FEMS Microbiology Letters 296, 45-51.
    • (2009) FEMS Microbiology Letters , vol.296 , pp. 45-51
    • Nadkarni, M.1    Martin, F.2    Hunter, N.3    Jacques, N.4
  • 30
    • 33644965765 scopus 로고    scopus 로고
    • Selective removal of DNA from dead cells of mixed bacterial communities by use of ethidium monoazide
    • Nocker A, Camper AK (2006) Selective removal of DNA from dead cells of mixed bacterial communities by use of ethidium monoazide. Applied and Environmental Microbiology 72, 1997-2004.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 1997-2004
    • Nocker, A.1    Camper, A.K.2
  • 32
    • 57549102106 scopus 로고    scopus 로고
    • Effects of probiotic Lactobacillus salivarius W24 on the compositional stability of oral microbial communities
    • Pham LC, van Spanning RJ, Roling WF et al. (2009) Effects of probiotic Lactobacillus salivarius W24 on the compositional stability of oral microbial communities. Archives of Oral Biology 54, 132-7.
    • (2009) Archives of Oral Biology , vol.54 , pp. 132-137
    • Pham, L.C.1    van Spanning, R.J.2    Roling, W.F.3
  • 33
    • 78651482834 scopus 로고    scopus 로고
    • Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
    • Pride DT, Sun CL, Salzman J et al. (2011) Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Research 21, 126-36.
    • (2011) Genome Research , vol.21 , pp. 126-136
    • Pride, D.T.1    Sun, C.L.2    Salzman, J.3
  • 34
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K et al. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 35, 7188-96.
    • (2007) Nucleic Acids Research , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3
  • 36
    • 77956965375 scopus 로고    scopus 로고
    • Apical root canal microbiota as determined by reversecapture checkerboard analysis of cryogenically ground root samples from teeth with apical periodontitis
    • Rôças IN, Alves FR, Santos AL, Rosado AS, Siqueira JFJ (2010) Apical root canal microbiota as determined by reversecapture checkerboard analysis of cryogenically ground root samples from teeth with apical periodontitis. Journal of Endodontics 36, 1617-21.
    • (2010) Journal of Endodontics , vol.36 , pp. 1617-1621
    • Rôças, I.N.1    Alves, F.R.2    Santos, A.L.3    Rosado, A.S.4    Siqueira, J.F.J.5
  • 40
    • 33847045608 scopus 로고    scopus 로고
    • How useful is root canal culturing in predicting treatment outcome?
    • Sathorn C, Parashos P, Messer HH (2007) How useful is root canal culturing in predicting treatment outcome? Journal of Endodontics 33, 220-5.
    • (2007) Journal of Endodontics , vol.33 , pp. 220-225
    • Sathorn, C.1    Parashos, P.2    Messer, H.H.3
  • 41
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology 71, 1501-6.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 44
    • 34548237732 scopus 로고    scopus 로고
    • Photoactivated ethidium monoazide directly cleaves bacterial DNA and is applied to PCR for discrimination of live and dead bacteria
    • Soejima T, Iida K, Qin T et al. (2007) Photoactivated ethidium monoazide directly cleaves bacterial DNA and is applied to PCR for discrimination of live and dead bacteria. Microbiology and Immunology 51, 763-75.
    • (2007) Microbiology and Immunology , vol.51 , pp. 763-775
    • Soejima, T.1    Iida, K.2    Qin, T.3
  • 46
    • 64149123778 scopus 로고    scopus 로고
    • Next-generation sequencing: from basic research to diagnostics
    • Voelkerding KV, Dames SA, Durtschl JD (2009) Next-generation sequencing: from basic research to diagnostics. Clinical Chemistry 55, 641-58.
    • (2009) Clinical Chemistry , vol.55 , pp. 641-658
    • Voelkerding, K.V.1    Dames, S.A.2    Durtschl, J.D.3


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