메뉴 건너뛰기




Volumn 11, Issue 5, 2012, Pages 3046-3052

Performance of isobaric and isotopic labeling in quantitative plant proteomics

Author keywords

high resolution mass spectrometry; ICPL; iTRAQ; plant proteomics; quantitative proteomics

Indexed keywords

TRYPSIN; VEGETABLE PROTEIN;

EID: 84860641713     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr300192f     Document Type: Article
Times cited : (42)

References (25)
  • 1
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • Ong, S. E.; Mann, M. Mass spectrometry-based proteomics turns quantitative Nat. Chem. Biol. 2005, 1 (5) 252-62
    • (2005) Nat. Chem. Biol. , vol.1 , Issue.5 , pp. 252-262
    • Ong, S.E.1    Mann, M.2
  • 2
    • 79551499482 scopus 로고    scopus 로고
    • Quantitative plant proteomics
    • Bindschedler, L. V.; Cramer, R. Quantitative plant proteomics Proteomics 2011, 11 (4) 756-75
    • (2011) Proteomics , vol.11 , Issue.4 , pp. 756-775
    • Bindschedler, L.V.1    Cramer, R.2
  • 3
    • 37849025862 scopus 로고    scopus 로고
    • Quantitative proteomics in plants: Choices in abundance
    • Thelen, J. J.; Peck, S. C. Quantitative proteomics in plants: choices in abundance Plant Cell 2007, 19 (11) 3339-46
    • (2007) Plant Cell , vol.19 , Issue.11 , pp. 3339-3346
    • Thelen, J.J.1    Peck, S.C.2
  • 4
    • 63349084973 scopus 로고    scopus 로고
    • Advancements in plant proteomics using quantitative mass spectrometry
    • Oeljeklaus, S.; Meyer, H. E.; Warscheid, B. Advancements in plant proteomics using quantitative mass spectrometry J. Proteomics 2009, 72 (3) 545-54
    • (2009) J. Proteomics , vol.72 , Issue.3 , pp. 545-554
    • Oeljeklaus, S.1    Meyer, H.E.2    Warscheid, B.3
  • 5
    • 10744233766 scopus 로고    scopus 로고
    • Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
    • Wang, W.; Zhou, H.; Lin, H.; Roy, S.; Shaler, T. A.; Hill, L. R.; Norton, S.; Kumar, P.; Anderle, M.; Becker, C. H. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards Anal. Chem. 2003, 75 (18) 4818-26
    • (2003) Anal. Chem. , vol.75 , Issue.18 , pp. 4818-4826
    • Wang, W.1    Zhou, H.2    Lin, H.3    Roy, S.4    Shaler, T.A.5    Hill, L.R.6    Norton, S.7    Kumar, P.8    Anderle, M.9    Becker, C.H.10
  • 7
    • 0012351964 scopus 로고    scopus 로고
    • Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC)
    • Ong, S. E.; Kratchmarova, I.; Mann, M. Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC) J. Proteome Res. 2003, 2 (2) 173-81
    • (2003) J. Proteome Res. , vol.2 , Issue.2 , pp. 173-181
    • Ong, S.E.1    Kratchmarova, I.2    Mann, M.3
  • 8
    • 13244260803 scopus 로고    scopus 로고
    • A novel strategy for quantitative proteomics using isotope-coded protein labels
    • Schmidt, A.; Kellermann, J.; Lottspeich, F. A novel strategy for quantitative proteomics using isotope-coded protein labels Proteomics 2005, 5 (1) 4-15
    • (2005) Proteomics , vol.5 , Issue.1 , pp. 4-15
    • Schmidt, A.1    Kellermann, J.2    Lottspeich, F.3
  • 10
    • 77953846853 scopus 로고    scopus 로고
    • Differential proteomic analysis using isotope-coded protein-labeling strategies: Comparison, improvements and application to simulated microgravity effect on Cupriavidus metallidurans CH34
    • Leroy, B.; Rosier, C.; Erculisse, V.; Leys, N.; Mergeay, M.; Wattiez, R. Differential proteomic analysis using isotope-coded protein-labeling strategies: comparison, improvements and application to simulated microgravity effect on Cupriavidus metallidurans CH34 Proteomics 2010, 10 (12) 2281-91
    • (2010) Proteomics , vol.10 , Issue.12 , pp. 2281-2291
    • Leroy, B.1    Rosier, C.2    Erculisse, V.3    Leys, N.4    Mergeay, M.5    Wattiez, R.6
  • 12
    • 35648942133 scopus 로고    scopus 로고
    • 8-Plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimers disease
    • Choe, L.; DAscenzo, M.; Relkin, N. R.; Pappin, D.; Ross, P.; Williamson, B.; Guertin, S.; Pribil, P.; Lee, K. H. 8-Plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimers disease Proteomics 2007, 7 (20) 3651-60
    • (2007) Proteomics , vol.7 , Issue.20 , pp. 3651-3660
    • Choe, L.1    Dascenzo, M.2    Relkin, N.R.3    Pappin, D.4    Ross, P.5    Williamson, B.6    Guertin, S.7    Pribil, P.8    Lee, K.H.9
  • 13
    • 0001169424 scopus 로고
    • Seed development in Ricinus communis (castor bean). I. Descriptive morphology
    • Greenwood, J. S.; Bewley, J. D. Seed development in Ricinus communis (castor bean). I. Descriptive morphology Can. J. Bot. 1982, 60 (9) 1751-60
    • (1982) Can. J. Bot. , vol.60 , Issue.9 , pp. 1751-1760
    • Greenwood, J.S.1    Bewley, J.D.2
  • 15
    • 0033057707 scopus 로고    scopus 로고
    • Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry
    • Gobom, J.; Nordhoff, E.; Mirgorodskaya, E.; Ekman, R.; Roepstorff, P. Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry J. Mass Spectrom. 1999, 34 (2) 105-16
    • (1999) J. Mass Spectrom. , vol.34 , Issue.2 , pp. 105-116
    • Gobom, J.1    Nordhoff, E.2    Mirgorodskaya, E.3    Ekman, R.4    Roepstorff, P.5
  • 16
    • 0036745551 scopus 로고    scopus 로고
    • Graphite powder as an alternative or supplement to reversed-phase material for desalting and concentration of peptide mixtures prior to matrix-assisted laser desorption/ionization-mass spectrometry
    • Larsen, M. R.; Cordwell, S. J.; Roepstorff, P. Graphite powder as an alternative or supplement to reversed-phase material for desalting and concentration of peptide mixtures prior to matrix-assisted laser desorption/ionization-mass spectrometry Proteomics 2002, 2 (9) 1277-87
    • (2002) Proteomics , vol.2 , Issue.9 , pp. 1277-1287
    • Larsen, M.R.1    Cordwell, S.J.2    Roepstorff, P.3
  • 17
    • 78649961364 scopus 로고    scopus 로고
    • Selective enrichment of sialic acid-containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry
    • Palmisano, G.; Lendal, S. E.; Engholm-Keller, K.; Leth-Larsen, R.; Parker, B. L.; Larsen, M. R. Selective enrichment of sialic acid-containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry Nat. Protoc. 2010, 5 (12) 1974-82
    • (2010) Nat. Protoc. , vol.5 , Issue.12 , pp. 1974-1982
    • Palmisano, G.1    Lendal, S.E.2    Engholm-Keller, K.3    Leth-Larsen, R.4    Parker, B.L.5    Larsen, M.R.6
  • 19
    • 77953595441 scopus 로고    scopus 로고
    • Undesirable charge-enhancement of isobaric tagged phosphopeptides leads to reduced identification efficiency
    • Thingholm, T. E.; Palmisano, G.; Kjeldsen, F.; Larsen, M. R. Undesirable charge-enhancement of isobaric tagged phosphopeptides leads to reduced identification efficiency J. Proteome Res. 2010, 9 (8) 4045-52
    • (2010) J. Proteome Res. , vol.9 , Issue.8 , pp. 4045-4052
    • Thingholm, T.E.1    Palmisano, G.2    Kjeldsen, F.3    Larsen, M.R.4
  • 20
    • 77953916879 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y.; Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing J. R. Stat. Soc. 1995, 57 (1) 12
    • (1995) J. R. Stat. Soc. , vol.57 , Issue.1 , pp. 12
    • Benjamini, Y.1    Hochberg, Y.2
  • 21
    • 70349974261 scopus 로고    scopus 로고
    • High precision quantitative proteomics using iTRAQ on an LTQ Orbitrap: A new mass spectrometric method combining the benefits of all
    • Kocher, T.; Pichler, P.; Schutzbier, M.; Stingl, C.; Kaul, A.; Teucher, N.; Hasenfuss, G.; Penninger, J. M.; Mechtler, K. High precision quantitative proteomics using iTRAQ on an LTQ Orbitrap: a new mass spectrometric method combining the benefits of all J. Proteome Res. 2009, 8 (10) 4743-4752
    • (2009) J. Proteome Res. , vol.8 , Issue.10 , pp. 4743-4752
    • Kocher, T.1    Pichler, P.2    Schutzbier, M.3    Stingl, C.4    Kaul, A.5    Teucher, N.6    Hasenfuss, G.7    Penninger, J.M.8    Mechtler, K.9
  • 22
    • 79952288667 scopus 로고    scopus 로고
    • ITRAQ protein quantification: A quality-controlled workflow
    • Burkhart, J. M.; Vaudel, M.; Zahedi, R. P.; Martens, L.; Sickmann, A. iTRAQ protein quantification: a quality-controlled workflow Proteomics 2011, 11 (6) 1125-34
    • (2011) Proteomics , vol.11 , Issue.6 , pp. 1125-1134
    • Burkhart, J.M.1    Vaudel, M.2    Zahedi, R.P.3    Martens, L.4    Sickmann, A.5
  • 23
    • 76749106675 scopus 로고    scopus 로고
    • ICPLQuant - A software for non-isobaric isotopic labeling proteomics
    • Brunner, A.; Keidel, E. M.; Dosch, D.; Kellermann, J.; Lottspeich, F. ICPLQuant - a software for non-isobaric isotopic labeling proteomics Proteomics 2010, 10 (2) 315-26
    • (2010) Proteomics , vol.10 , Issue.2 , pp. 315-326
    • Brunner, A.1    Keidel, E.M.2    Dosch, D.3    Kellermann, J.4    Lottspeich, F.5
  • 24
    • 70449412362 scopus 로고    scopus 로고
    • ITRAQ underestimation in simple and complex mixtures: "The good, the bad and the ugly"
    • Ow, S. Y.; Salim, M.; Noirel, J.; Evans, C.; Rehman, I.; Wright, P. C. iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly" J. Proteome Res. 2009, 8 (11) 5347-55
    • (2009) J. Proteome Res. , vol.8 , Issue.11 , pp. 5347-5355
    • Ow, S.Y.1    Salim, M.2    Noirel, J.3    Evans, C.4    Rehman, I.5    Wright, P.C.6
  • 25
    • 67649184776 scopus 로고    scopus 로고
    • A rapid and simple procedure for the depletion of abundant storage proteins from legume seeds to advance proteome analysis: A case study using Glycine max
    • Krishnan, H. B.; Oehrle, N. W.; Natarajan, S. S. A rapid and simple procedure for the depletion of abundant storage proteins from legume seeds to advance proteome analysis: a case study using Glycine max Proteomics 2009, 9 (11) 3174-88
    • (2009) Proteomics , vol.9 , Issue.11 , pp. 3174-3188
    • Krishnan, H.B.1    Oehrle, N.W.2    Natarajan, S.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.