메뉴 건너뛰기




Volumn , Issue , 2010, Pages 245-256

Proteomic Analysis of Human Pluripotent Cells

Author keywords

Embryonic stem (ES) cells, pluripotent cells from inner cell mass of blastocyst stage embryos; Proteomic analysis of human pluripotent cells; Proteomics techniques two dimensional polyacrylamide gel electrophoresis (2D PAGE)

Indexed keywords


EID: 84860603864     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470889909.ch21     Document Type: Chapter
Times cited : (1)

References (53)
  • 1
    • 18844396119 scopus 로고    scopus 로고
    • Embryonic stem cell differentiation: emergence of a new era in biology and medicine
    • Keller G. Embryonic stem cell differentiation: emergence of a new era in biology and medicine. Genes Dev. 2005;19:1129-1155.
    • (2005) Genes Dev. , vol.19 , pp. 1129-1155
    • Keller, G.1
  • 2
    • 39349106325 scopus 로고    scopus 로고
    • Differentiation of embryonic stem cells to clinically relevant populations: lessons from embryonic development
    • Murry CE, Keller G. Differentiation of embryonic stem cells to clinically relevant populations: lessons from embryonic development. Cell. 2008;132:661-680.
    • (2008) Cell. , vol.132 , pp. 661-680
    • Murry, C.E.1    Keller, G.2
  • 3
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell. 2006;126:663-676.
    • (2006) Cell. , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 4
    • 36248966518 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from adult human fibroblasts by defined factors
    • Takahashi K, Tanabe K, Ohnuki M, et al. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell. 2007;131:861-872.
    • (2007) Cell. , vol.131 , pp. 861-872
    • Takahashi, K.1    Tanabe, K.2    Ohnuki, M.3
  • 5
    • 65549116765 scopus 로고    scopus 로고
    • Pluripotency: toward a gold standard for human ES and iPS cells
    • Smith KP, Luong MX, Stein GS. Pluripotency: toward a gold standard for human ES and iPS cells. J Cell Physiol. 2009;220:21-29.
    • (2009) J Cell Physiol. , vol.220 , pp. 21-29
    • Smith, K.P.1    Luong, M.X.2    Stein, G.S.3
  • 6
    • 34147217397 scopus 로고    scopus 로고
    • Molecularmechanisms involved in self-renewal and pluripotency of embryonic stem cells
    • Liu N, LuM, Tian X, et al. Molecularmechanisms involved in self-renewal and pluripotency of embryonic stem cells. J Cell Physiol. 2007;211:279-286.
    • (2007) J Cell Physiol. , vol.211 , pp. 279-286
    • Liu, N.1    Lu, M.2    Tian, X.3
  • 7
    • 55749095513 scopus 로고    scopus 로고
    • Cell surface biomarkers of embryonic stem cells
    • Nagano K, Yoshida Y, Isobe T. Cell surface biomarkers of embryonic stem cells. Proteomics. 2008;8:4025- 4035.
    • (2008) Proteomics. , vol.8 , pp. 4025-4035
    • Nagano, K.1    Yoshida, Y.2    Isobe, T.3
  • 8
    • 33845212541 scopus 로고    scopus 로고
    • Cross-species transcriptional profiles establish a functional portrait of embryonic stem cells
    • Sun Y, Li H, Liu Y, et al. Cross-species transcriptional profiles establish a functional portrait of embryonic stem cells. Genomics. 2007;89:22-35.
    • (2007) Genomics. , vol.89 , pp. 22-35
    • Sun, Y.1    Li, H.2    Liu, Y.3
  • 9
    • 38449119984 scopus 로고    scopus 로고
    • Genomic studies to explore self-renewal and differentiation properties of embryonic stem cells
    • Zhan M. Genomic studies to explore self-renewal and differentiation properties of embryonic stem cells. Front Biosci. 2008;13:276-283.
    • (2008) Front Biosci. , vol.13 , pp. 276-283
    • Zhan, M.1
  • 10
    • 46249103973 scopus 로고    scopus 로고
    • Stem cell transcriptome profiling via massive-scale mRNA sequencing
    • CloonanN, Forrest AR, Kolle G, et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods. 2008;5:613-619.
    • (2008) Nat Methods. , vol.5 , pp. 613-619
    • Cloonan, N.1    Forrest, A.R.2    Kolle, G.3
  • 12
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T. Chromatin modifications and their function. Cell. 2007;128:693-705.
    • (2007) Cell. , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 13
    • 0029033175 scopus 로고
    • Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium
    • Wasinger VC, Cordwell SJ, Cerpa-Poljak A, et al. Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium. Electrophoresis. 1995;16:1090-1094.
    • (1995) Electrophoresis. , vol.16 , pp. 1090-1094
    • Wasinger, V.C.1    Cordwell, S.J.2    Cerpa-Poljak, A.3
  • 14
    • 0029867292 scopus 로고    scopus 로고
    • Twenty years of twodimensional electrophoresis: past, present and future
    • Anderson NG, Anderson NL. Twenty years of twodimensional electrophoresis: past, present and future. Electrophoresis. 1996;17:443-453.
    • (1996) Electrophoresis. , vol.17 , pp. 443-453
    • Anderson, N.G.1    Anderson, N.L.2
  • 15
    • 0030333694 scopus 로고    scopus 로고
    • Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it
    • Wilkins MR, Sanchez JC, Gooley AA, et al. Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. Biotechnol Genet Eng Rev. 1996;13:19-50.
    • (1996) Biotechnol Genet Eng Rev. , vol.13 , pp. 19-50
    • Wilkins, M.R.1    Sanchez, J.C.2    Gooley, A.A.3
  • 17
    • 0032784646 scopus 로고    scopus 로고
    • Proteomics: quantitative and physical mapping of cellular proteins
    • Blackstock WP, Weir MP. Proteomics: quantitative and physical mapping of cellular proteins. Trends Biotechnol. 1999;17:121-127.
    • (1999) Trends Biotechnol. , vol.17 , pp. 121-127
    • Blackstock, W.P.1    Weir, M.P.2
  • 18
    • 70449729515 scopus 로고    scopus 로고
    • Biomarkers of lung-related diseases: current knowledge by proteomic approaches
    • Lau AT, Chiu JF. Biomarkers of lung-related diseases: current knowledge by proteomic approaches. J Cell Physiol. 2009;221:535-543.
    • (2009) J Cell Physiol. , vol.221 , pp. 535-543
    • Lau, A.T.1    Chiu, J.F.2
  • 19
    • 4644301795 scopus 로고    scopus 로고
    • A proteome analysis of the arsenite response in cultured lung cells: evidence for in vitro oxidative stress-induced apoptosis
    • Lau AT, He QY, Chiu JF. A proteome analysis of the arsenite response in cultured lung cells: evidence for in vitro oxidative stress-induced apoptosis. Biochem J. 2004;382:641-650.
    • (2004) Biochem J. , vol.382 , pp. 641-650
    • Lau, A.T.1    He, Q.Y.2    Chiu, J.F.3
  • 20
    • 49849096759 scopus 로고    scopus 로고
    • Proteomic analysis of neonatal mouse brain: evidence for hypoxia- and ischemia-induced dephosphorylation of collapsin response mediator proteins
    • Zhou Y, Bhatia I, Cai Z, et al. Proteomic analysis of neonatal mouse brain: evidence for hypoxia- and ischemia-induced dephosphorylation of collapsin response mediator proteins. J Proteome Res. 2008;7:2507-2515.
    • (2008) J Proteome Res. , vol.7 , pp. 2507-2515
    • Zhou, Y.1    Bhatia, I.2    Cai, Z.3
  • 21
    • 0343376097 scopus 로고    scopus 로고
    • Difference gel electrophoresis: a single gel method for detecting changes in protein extracts
    • Unlu M, Morgan ME,Minden JS. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis. 1997;18:2071-2077.
    • (1997) Electrophoresis. , vol.18 , pp. 2071-2077
    • Unlu, M.1    Morgan, M.E.2    Minden, J.S.3
  • 22
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, et al. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis. 1999;20:3551-3567.
    • (1999) Electrophoresis. , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3
  • 23
    • 0034213595 scopus 로고    scopus 로고
    • ProFound: an expert system for protein identification using mass spectrometric peptide mapping information
    • Zhang W, Chait BT. ProFound: an expert system for protein identification using mass spectrometric peptide mapping information. Anal Chem. 2000;72:2482-2489.
    • (2000) Anal Chem. , vol.72 , pp. 2482-2489
    • Zhang, W.1    Chait, B.T.2
  • 24
    • 0033565832 scopus 로고    scopus 로고
    • Role of accurate mass measurement (± 10 ppm) in protein identification strategies employing MS or MS/MS and database searching
    • Clauser KR, Baker P, Burlingame AL. Role of accurate mass measurement (± 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal Chem. 1999;71:2871-2882.
    • (1999) Anal Chem. , vol.71 , pp. 2871-2882
    • Clauser, K.R.1    Baker, P.2    Burlingame, A.L.3
  • 26
    • 0027608882 scopus 로고
    • Use of mass spectrometric molecular weight information to identify proteins in sequence databases
    • Mann M, Hojrup P, Roepstorff P. Use of mass spectrometric molecular weight information to identify proteins in sequence databases. Biol Mass Spectrom. 1993;22:338-345.
    • (1993) Biol Mass Spectrom. , vol.22 , pp. 338-345
    • Mann, M.1    Hojrup, P.2    Roepstorff, P.3
  • 27
    • 12944269065 scopus 로고
    • Rapid identification of proteins by peptide-mass fingerprinting
    • Pappin DJ, Hojrup P, Bleasby AJ. Rapid identification of proteins by peptide-mass fingerprinting. Curr Biol. 1993;3:327-332.
    • (1993) Curr Biol. , vol.3 , pp. 327-332
    • Pappin, D.J.1    Hojrup, P.2    Bleasby, A.J.3
  • 28
    • 0027375364 scopus 로고
    • Peptide mass maps: a highly informative approach to protein identification
    • Yates JR 3rd, Speicher S, Griffin PR, et al. Peptide mass maps: a highly informative approach to protein identification. Anal Biochem. 1993;214:397-408.
    • (1993) Anal Biochem. , vol.214 , pp. 397-408
    • Yates III, J.R.1    Speicher, S.2    Griffin, P.R.3
  • 29
    • 0031298696 scopus 로고    scopus 로고
    • Identification of the components of simple protein mixtures by high-accuracy peptide mass mapping and database searching
    • Jensen ON, Podtelejnikov AV, Mann M. Identification of the components of simple protein mixtures by high-accuracy peptide mass mapping and database searching. Anal Chem. 1997;69:4741-4750.
    • (1997) Anal Chem. , vol.69 , pp. 4741-4750
    • Jensen, O.N.1    Podtelejnikov, A.V.2    Mann, M.3
  • 31
    • 0034679625 scopus 로고    scopus 로고
    • Phosphoacetylation of histone H3 on c-fos- and c-jun-associated nucleosomes upon gene activation
    • Clayton AL, Rose S, Barratt MJ, et al. Phosphoacetylation of histone H3 on c-fos- and c-jun-associated nucleosomes upon gene activation. EMBO J. 2000;19:3714-3726.
    • (2000) EMBO J. , vol.19 , pp. 3714-3726
    • Clayton, A.L.1    Rose, S.2    Barratt, M.J.3
  • 32
    • 25444442032 scopus 로고    scopus 로고
    • Modifications of human histone H3 variants during mitosis
    • Garcia BA, Barber CM, Hake SB, et al. Modifications of human histone H3 variants during mitosis. Biochemistry. 2005;44:13202-13213.
    • (2005) Biochemistry. , vol.44 , pp. 13202-13213
    • Garcia, B.A.1    Barber, C.M.2    Hake, S.B.3
  • 34
    • 0031568420 scopus 로고    scopus 로고
    • Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level
    • McCormack AL, Schieltz DM, Goode B, et al. Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level. Anal Chem. 1997;69:767-776.
    • (1997) Anal Chem. , vol.69 , pp. 767-776
    • McCormack, A.L.1    Schieltz, D.M.2    Goode, B.3
  • 35
    • 0034757770 scopus 로고    scopus 로고
    • Proteomics: the move to mixtures
    • Peng J, Gygi SP. Proteomics: the move to mixtures. J Mass Spectrom. 2001;36:1083-1091.
    • (2001) J Mass Spectrom. , vol.36 , pp. 1083-1091
    • Peng, J.1    Gygi, S.P.2
  • 36
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi SP, Rist B, Gerber SA, et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol. 1999;17:994-999.
    • (1999) Nat Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3
  • 37
    • 2142856295 scopus 로고    scopus 로고
    • Proteome profiling-pitfalls and progress
    • Haynes PA, Yates JR 3rd. Proteome profiling-pitfalls and progress. Yeast. 2000;17:81-87.
    • (2000) Yeast. , vol.17 , pp. 81-87
    • Haynes, P.A.1    Yates III, J.R.2
  • 38
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong SE, Blagoev B, Kratchmarova I, et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics. 2002;1:376-386.
    • (2002) Mol Cell Proteomics. , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3
  • 39
    • 19944432197 scopus 로고    scopus 로고
    • Multiplexed protein quantitation in Saccharomyces cerevisiae using aminereactive isobaric tagging reagents
    • Ross PL, Huang YN, Marchese JN, et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using aminereactive isobaric tagging reagents. Mol Cell Proteomics. 2004;3:1154-1169.
    • (2004) Mol Cell Proteomics. , vol.3 , pp. 1154-1169
    • Ross, P.L.1    Huang, Y.N.2    Marchese, J.N.3
  • 40
    • 62149108987 scopus 로고    scopus 로고
    • Hypoxia or in situ normoxia: the stem cell paradigm
    • Ivanovic Z. Hypoxia or in situ normoxia: the stem cell paradigm. J Cell Physiol. 2009;219:271-275.
    • (2009) J Cell Physiol. , vol.219 , pp. 271-275
    • Ivanovic, Z.1
  • 41
    • 69249210977 scopus 로고    scopus 로고
    • Hypoxia enhances the generation of induced pluripotent stem cells
    • Yoshida Y, Takahashi K, Okita K, et al. Hypoxia enhances the generation of induced pluripotent stem cells. Cell Stem Cell. 2009;5:237-241.
    • (2009) Cell Stem Cell. , vol.5 , pp. 237-241
    • Yoshida, Y.1    Takahashi, K.2    Okita, K.3
  • 42
    • 33745725870 scopus 로고    scopus 로고
    • Proteomic signature of human embryonic stem cells
    • Baharvand H, Hajheidari M, Ashtiani SK, et al. Proteomic signature of human embryonic stem cells. Proteomics. 2006;6:3544-3549.
    • (2006) Proteomics. , vol.6 , pp. 3544-3549
    • Baharvand, H.1    Hajheidari, M.2    Ashtiani, S.K.3
  • 43
    • 38349183249 scopus 로고    scopus 로고
    • A large-scale proteomic analysis of human embryonic stem cells
    • Schulz TC, Swistowska AM, Liu Y, et al. A large-scale proteomic analysis of human embryonic stem cells. BMC Genomics. 2007;8:478.
    • (2007) BMC Genomics. , vol.8 , pp. 478
    • Schulz, T.C.1    Swistowska, A.M.2    Liu, Y.3
  • 44
    • 42649116166 scopus 로고    scopus 로고
    • Coupled global and targeted proteomics of human embryonic stemcells during induced differentiation
    • Yocum AK, Gratsch TE, Leff N, et al. Coupled global and targeted proteomics of human embryonic stemcells during induced differentiation. Mol Cell Proteomics. 2008;7:750-767.
    • (2008) Mol Cell Proteomics. , vol.7 , pp. 750-767
    • Yocum, A.K.1    Gratsch, T.E.2    Leff, N.3
  • 45
    • 51649083519 scopus 로고    scopus 로고
    • Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells
    • Dormeyer W, vanHoof D, Braam SR, et al. Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells. J Proteome Res. 2008;7:2936-2951.
    • (2008) J Proteome Res. , vol.7 , pp. 2936-2951
    • Dormeyer, W.1    vanHoof, D.2    Braam, S.R.3
  • 46
    • 67449107495 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells
    • ProkhorovaTA, RigboltKT, JohansenPT, et al. Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells. Mol Cell Proteomics. 2009;8:959-970.
    • (2009) Mol Cell Proteomics. , vol.8 , pp. 959-970
    • Prokhorova, T.A.1    Rigbolt, K.T.2    Johansen, P.T.3
  • 47
    • 0036744406 scopus 로고    scopus 로고
    • Proteome analysis of conditionedmedium from mouse embryonic fibroblast feeder layers which support the growth of human embryonic stem cells
    • Lim JW, Bodnar A. Proteome analysis of conditionedmedium from mouse embryonic fibroblast feeder layers which support the growth of human embryonic stem cells. Proteomics. 2002;2:1187-1203.
    • (2002) Proteomics. , vol.2 , pp. 1187-1203
    • Lim, J.W.1    Bodnar, A.2
  • 48
    • 34250347656 scopus 로고    scopus 로고
    • Identification of proteins from feeder conditioned medium that support human embryonic stem cells
    • Chin AC, Fong WJ, Goh LT, et al. Identification of proteins from feeder conditioned medium that support human embryonic stem cells. J Biotechnol. 2007;130:320-328.
    • (2007) J Biotechnol. , vol.130 , pp. 320-328
    • Chin, A.C.1    Fong, W.J.2    Goh, L.T.3
  • 49
    • 34948895016 scopus 로고    scopus 로고
    • Identification of potential pluripotency determinants for human embryonic stem cells following proteomic analysis of human and mouse fibroblast conditioned media
    • Prowse AB, McQuade LR, Bryant KJ, et al. Identification of potential pluripotency determinants for human embryonic stem cells following proteomic analysis of human and mouse fibroblast conditioned media. J Proteome Res. 2007;6:3796-3807.
    • (2007) J Proteome Res. , vol.6 , pp. 3796-3807
    • Prowse, A.B.1    McQuade, L.R.2    Bryant, K.J.3
  • 50
    • 58049220094 scopus 로고    scopus 로고
    • Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation
    • Levenstein ME, Berggren WT, Lee JE, et al. Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation. Stem Cells. 2008;26:3099-3107.
    • (2008) Stem Cells. , vol.26 , pp. 3099-3107
    • Levenstein, M.E.1    Berggren, W.T.2    Lee, J.E.3
  • 51
    • 59049086847 scopus 로고    scopus 로고
    • Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
    • Swaney DL,Wenger CD, Thomson JA, et al. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proc Natl Acad Sci USA. 2009;106:995-1000.
    • (2009) Proc Natl Acad Sci USA. , vol.106 , pp. 995-1000
    • Swaney, D.L.1    Wenger, C.D.2    Thomson, J.A.3
  • 52
    • 67849121794 scopus 로고    scopus 로고
    • Phosphoproteomic analysis of human embryonic stem cells
    • Brill LM, Xiong W, Lee KB, et al. Phosphoproteomic analysis of human embryonic stem cells. Cell Stem Cell. 2009;5:204-213.
    • (2009) Cell Stem Cell. , vol.5 , pp. 204-213
    • Brill, L.M.1    Xiong, W.2    Lee, K.B.3
  • 53
    • 67849106825 scopus 로고    scopus 로고
    • Phosphorylation dynamics during early differentiation of human embryonic stem cells
    • Van Hoof D, Munoz J, Braam SR, et al. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell. 2009;5:214-226.
    • (2009) Cell Stem Cell , vol.5 , pp. 214-226
    • Van Hoof, D.1    Munoz, J.2    Braam, S.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.